HEADER HYDROLASE 25-MAY-15 5BN8 TITLE CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE HUMAN HSP70 NBD. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK 70 KDA PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEAT SHOCK 70 KDA PROTEIN 1,HSP70.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSPA1A, HSPA1, HSX70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B+ KEYWDS HYDROLASE, ATP HYDROLYSIS ACTIVITY EXPDTA X-RAY DIFFRACTION AUTHOR D.NARAYANAN,R.A.ENGH REVDAT 2 10-JAN-24 5BN8 1 LINK REVDAT 1 14-SEP-16 5BN8 0 JRNL AUTH D.NARAYANAN,A.PFLUG,T.CHRISTOPEIT,P.KYOMUHENDO,R.A.ENGH JRNL TITL NUCLEOTIDE BINDING TO VARIANTS OF THE HSP70-NBD. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 91861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 577 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3194 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4347 ; 1.998 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 5.682 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;34.951 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;12.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.730 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 485 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2451 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1601 ; 2.205 ; 1.649 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2028 ; 2.583 ; 2.498 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1593 ; 4.398 ; 2.083 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5636 ; 7.394 ;17.296 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3194 ; 6.679 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 126 ;55.963 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3586 ;28.344 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5BN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000206204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 38.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03823 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47520 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0 REMARK 200 STARTING MODEL: 3ATV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG-3350 W/V, 0.1 M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.06450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.05900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.05900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.06450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 383 REMARK 465 LYS A 384 REMARK 465 SER A 385 REMARK 465 GLU A 386 REMARK 465 ASN A 387 REMARK 465 VAL A 388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 190 CD CE NZ REMARK 470 ARG A 247 CD NE CZ NH1 NH2 REMARK 470 GLY A 382 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 509 O HOH A 939 1.95 REMARK 500 OG1 THR A 14 O3 PO4 A 407 2.04 REMARK 500 O HOH A 504 O HOH A 825 2.05 REMARK 500 O HOH A 1007 O HOH A 1046 2.12 REMARK 500 O HOH A 543 O HOH A 1024 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 315 O HOH A 561 1655 1.93 REMARK 500 O HOH A 881 O HOH A 998 3545 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 110 CD GLU A 110 OE2 0.078 REMARK 500 PRO A 344 CD PRO A 344 N -0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 171 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 187 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 187 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 292 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1077 DISTANCE = 6.13 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PO4 A 405 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 409 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 149 OH REMARK 620 2 TYR A 149 OH 36.4 REMARK 620 3 THR A 204 OG1 127.8 124.5 REMARK 620 4 ASP A 206 OD2 119.3 82.9 79.4 REMARK 620 5 PO4 A 404 O2 131.4 146.3 88.0 96.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 404 O4 REMARK 620 2 PO4 A 407 O4 108.4 REMARK 620 3 PO4 A 407 O4 99.5 60.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 404 O1 REMARK 620 2 PO4 A 407 O1 91.5 REMARK 620 3 HOH A 528 O 90.7 177.2 REMARK 620 4 HOH A 563 O 91.2 86.0 95.6 REMARK 620 5 HOH A 569 O 89.5 90.5 87.9 176.4 REMARK 620 6 HOH A 589 O 177.8 90.1 87.7 87.6 91.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 409 DBREF 5BN8 A 1 388 UNP P0DMV8 HS71A_HUMAN 1 388 SEQRES 1 A 388 MET ALA LYS ALA ALA ALA ILE GLY ILE ASP LEU GLY THR SEQRES 2 A 388 THR TYR SER CYS VAL GLY VAL PHE GLN HIS GLY LYS VAL SEQRES 3 A 388 GLU ILE ILE ALA ASN ASP GLN GLY ASN ARG THR THR PRO SEQRES 4 A 388 SER TYR VAL ALA PHE THR ASP THR GLU ARG LEU ILE GLY SEQRES 5 A 388 ASP ALA ALA LYS ASN GLN VAL ALA LEU ASN PRO GLN ASN SEQRES 6 A 388 THR VAL PHE ASP ALA LYS ARG LEU ILE GLY ARG LYS PHE SEQRES 7 A 388 GLY ASP PRO VAL VAL GLN SER ASP MET LYS HIS TRP PRO SEQRES 8 A 388 PHE GLN VAL ILE ASN ASP GLY ASP LYS PRO LYS VAL GLN SEQRES 9 A 388 VAL SER TYR LYS GLY GLU THR LYS ALA PHE TYR PRO GLU SEQRES 10 A 388 GLU ILE SER SER MET VAL LEU THR LYS MET LYS GLU ILE SEQRES 11 A 388 ALA GLU ALA TYR LEU GLY TYR PRO VAL THR ASN ALA VAL SEQRES 12 A 388 ILE THR VAL PRO ALA TYR PHE ASN ASP SER GLN ARG GLN SEQRES 13 A 388 ALA THR LYS ASP ALA GLY VAL ILE ALA GLY LEU ASN VAL SEQRES 14 A 388 LEU ARG ILE ILE ASN GLU PRO THR ALA ALA ALA ILE ALA SEQRES 15 A 388 TYR GLY LEU ASP ARG THR GLY LYS GLY GLU ARG ASN VAL SEQRES 16 A 388 LEU ILE PHE ASP LEU GLY GLY GLY THR PHE ASP VAL SER SEQRES 17 A 388 ILE LEU THR ILE ASP ASP GLY ILE PHE GLU VAL LYS ALA SEQRES 18 A 388 THR ALA GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP SEQRES 19 A 388 ASN ARG LEU VAL ASN HIS PHE VAL GLU GLU PHE LYS ARG SEQRES 20 A 388 LYS HIS LYS LYS ASP ILE SER GLN ASN LYS ARG ALA VAL SEQRES 21 A 388 ARG ARG LEU ARG THR ALA CYS GLU ARG ALA LYS ARG THR SEQRES 22 A 388 LEU SER SER SER THR GLN ALA SER LEU GLU ILE ASP SER SEQRES 23 A 388 LEU PHE GLU GLY ILE ASP PHE TYR THR SER ILE THR ARG SEQRES 24 A 388 ALA ARG PHE GLU GLU LEU CYS SER ASP LEU PHE ARG SER SEQRES 25 A 388 THR LEU GLU PRO VAL GLU LYS ALA LEU ARG ASP ALA LYS SEQRES 26 A 388 LEU ASP LYS ALA GLN ILE HIS ASP LEU VAL LEU VAL GLY SEQRES 27 A 388 GLY SER THR ARG ILE PRO LYS VAL GLN LYS LEU LEU GLN SEQRES 28 A 388 ASP PHE PHE ASN GLY ARG ASP LEU ASN LYS SER ILE ASN SEQRES 29 A 388 PRO ASP GLU ALA VAL ALA TYR GLY ALA ALA VAL GLN ALA SEQRES 30 A 388 ALA ILE LEU MET GLY ASP LYS SER GLU ASN VAL HET EPE A 401 15 HET MG A 402 1 HET MG A 403 1 HET PO4 A 404 5 HET PO4 A 405 4 HET PO4 A 406 5 HET PO4 A 407 10 HET CL A 408 1 HET NA A 409 1 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN EPE HEPES FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 MG 2(MG 2+) FORMUL 5 PO4 4(O4 P 3-) FORMUL 9 CL CL 1- FORMUL 10 NA NA 1+ FORMUL 11 HOH *577(H2 O) HELIX 1 AA1 GLY A 52 ASN A 57 1 6 HELIX 2 AA2 ASN A 62 GLN A 64 5 3 HELIX 3 AA3 ASP A 69 LEU A 73 5 5 HELIX 4 AA4 ASP A 80 MET A 87 1 8 HELIX 5 AA5 LYS A 88 TRP A 90 5 3 HELIX 6 AA6 TYR A 115 GLY A 136 1 22 HELIX 7 AA7 ASN A 151 ALA A 165 1 15 HELIX 8 AA8 GLU A 175 TYR A 183 1 9 HELIX 9 AA9 GLY A 184 THR A 188 5 5 HELIX 10 AB1 GLY A 229 LYS A 250 1 22 HELIX 11 AB2 ASN A 256 SER A 275 1 20 HELIX 12 AB3 ARG A 299 CYS A 306 1 8 HELIX 13 AB4 CYS A 306 THR A 313 1 8 HELIX 14 AB5 THR A 313 LYS A 325 1 13 HELIX 15 AB6 ASP A 327 ILE A 331 5 5 HELIX 16 AB7 GLY A 338 ARG A 342 5 5 HELIX 17 AB8 ILE A 343 PHE A 354 1 12 HELIX 18 AB9 GLU A 367 GLY A 382 1 16 SHEET 1 AA1 3 LYS A 25 ILE A 28 0 SHEET 2 AA1 3 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27 SHEET 3 AA1 3 THR A 38 PRO A 39 -1 O THR A 38 N SER A 16 SHEET 1 AA2 5 LYS A 25 ILE A 28 0 SHEET 2 AA2 5 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27 SHEET 3 AA2 5 ILE A 7 ASP A 10 -1 N GLY A 8 O GLY A 19 SHEET 4 AA2 5 ASN A 141 VAL A 146 1 O VAL A 143 N ILE A 9 SHEET 5 AA2 5 ASN A 168 ASN A 174 1 O LEU A 170 N ALA A 142 SHEET 1 AA3 3 ARG A 49 ILE A 51 0 SHEET 2 AA3 3 VAL A 42 PHE A 44 -1 N ALA A 43 O LEU A 50 SHEET 3 AA3 3 THR A 66 VAL A 67 -1 O VAL A 67 N VAL A 42 SHEET 1 AA4 3 GLN A 93 ASP A 97 0 SHEET 2 AA4 3 LYS A 100 TYR A 107 -1 O LYS A 100 N ASP A 97 SHEET 3 AA4 3 GLU A 110 PHE A 114 -1 O PHE A 114 N VAL A 103 SHEET 1 AA5 4 ILE A 216 ASP A 225 0 SHEET 2 AA5 4 PHE A 205 ASP A 213 -1 N VAL A 207 O ALA A 223 SHEET 3 AA5 4 ARG A 193 LEU A 200 -1 N ILE A 197 O SER A 208 SHEET 4 AA5 4 ASP A 333 VAL A 337 1 O VAL A 335 N PHE A 198 SHEET 1 AA6 2 GLN A 279 PHE A 288 0 SHEET 2 AA6 2 ILE A 291 THR A 298 -1 O PHE A 293 N ILE A 284 LINK OH ATYR A 149 NA NA A 409 1555 1555 2.88 LINK OH BTYR A 149 NA NA A 409 1555 1555 2.42 LINK OG1 THR A 204 NA NA A 409 1555 1555 2.94 LINK OD2 ASP A 206 NA NA A 409 1555 1555 2.70 LINK MG MG A 402 O4 PO4 A 404 1555 1555 2.65 LINK MG MG A 402 O4 APO4 A 407 1555 1555 1.87 LINK MG MG A 402 O4 BPO4 A 407 1555 1555 2.52 LINK MG MG A 403 O1 PO4 A 404 1555 1555 2.06 LINK MG MG A 403 O1 BPO4 A 407 1555 1555 2.13 LINK MG MG A 403 O HOH A 528 1555 1555 2.08 LINK MG MG A 403 O HOH A 563 1555 1555 2.08 LINK MG MG A 403 O HOH A 569 1555 1555 2.03 LINK MG MG A 403 O HOH A 589 1555 1555 2.18 LINK O2 PO4 A 404 NA NA A 409 1555 1555 2.64 SITE 1 AC1 13 ASN A 57 GLN A 58 ALA A 60 LEU A 61 SITE 2 AC1 13 LYS A 100 TYR A 115 GLU A 117 ARG A 258 SITE 3 AC1 13 HOH A 583 HOH A 810 HOH A 844 HOH A 861 SITE 4 AC1 13 HOH A 954 SITE 1 AC2 5 GLY A 202 GLY A 203 THR A 204 PO4 A 404 SITE 2 AC2 5 PO4 A 407 SITE 1 AC3 6 PO4 A 404 PO4 A 407 HOH A 528 HOH A 563 SITE 2 AC3 6 HOH A 569 HOH A 589 SITE 1 AC4 13 GLY A 12 THR A 13 LYS A 71 GLU A 175 SITE 2 AC4 13 THR A 204 MG A 402 MG A 403 PO4 A 407 SITE 3 AC4 13 NA A 409 HOH A 528 HOH A 563 HOH A 569 SITE 4 AC4 13 HOH A 706 SITE 1 AC5 4 GLN A 33 ASN A 35 ASP A 53 ASN A 57 SITE 1 AC6 7 LEU A 50 ILE A 51 ALA A 54 LYS A 126 SITE 2 AC6 7 HOH A 501 HOH A 737 HOH A 761 SITE 1 AC7 16 GLY A 12 THR A 13 THR A 14 TYR A 15 SITE 2 AC7 16 GLY A 201 GLY A 202 GLY A 203 MG A 402 SITE 3 AC7 16 MG A 403 PO4 A 404 HOH A 504 HOH A 549 SITE 4 AC7 16 HOH A 563 HOH A 569 HOH A 589 HOH A 825 SITE 1 AC8 4 ASN A 31 ASP A 32 GLN A 33 LYS A 126 SITE 1 AC9 4 TYR A 149 THR A 204 ASP A 206 PO4 A 404 CRYST1 46.129 63.700 144.118 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006939 0.00000