HEADER HYDROLASE 25-MAY-15 5BN9 TITLE CRYSTAL STRUCTURE OF ADP BOUND HUMAN HSP70 NBD MUTANT R272K. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK 70 KDA PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEAT SHOCK 70 KDA PROTEIN 1,HSP70.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSPA1A, HSPA1, HSX70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B+ KEYWDS HYDROLASE, ATP HYDROLYSIS ACTIVITY EXPDTA X-RAY DIFFRACTION AUTHOR D.NARAYANAN,R.A.ENGH REVDAT 2 10-JAN-24 5BN9 1 REMARK REVDAT 1 14-SEP-16 5BN9 0 JRNL AUTH D.NARAYANAN,A.PFLUG,T.CHRISTOPEIT,P.KYOMUHENDO,R.A.ENGH JRNL TITL NUCLEOTIDE BINDING TO VARIANTS OF THE HSP70-NBD. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 46836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.460 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4800 - 4.0708 0.96 3380 150 0.1497 0.1549 REMARK 3 2 4.0708 - 3.2315 0.98 3280 147 0.1647 0.1770 REMARK 3 3 3.2315 - 2.8231 0.99 3267 146 0.1939 0.2037 REMARK 3 4 2.8231 - 2.5650 0.99 3228 144 0.1878 0.2349 REMARK 3 5 2.5650 - 2.3812 0.99 3231 144 0.1891 0.2084 REMARK 3 6 2.3812 - 2.2408 0.99 3229 144 0.1842 0.2155 REMARK 3 7 2.2408 - 2.1286 0.99 3227 144 0.1733 0.1977 REMARK 3 8 2.1286 - 2.0359 0.99 3214 143 0.1821 0.2278 REMARK 3 9 2.0359 - 1.9575 1.00 3225 144 0.1845 0.2351 REMARK 3 10 1.9575 - 1.8900 0.99 3205 143 0.1871 0.2023 REMARK 3 11 1.8900 - 1.8309 1.00 3209 144 0.1957 0.2651 REMARK 3 12 1.8309 - 1.7785 1.00 3209 143 0.2061 0.2434 REMARK 3 13 1.7785 - 1.7317 0.97 3143 139 0.2195 0.2236 REMARK 3 14 1.7317 - 1.6890 0.87 2788 125 0.2557 0.2751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3074 REMARK 3 ANGLE : 1.066 4165 REMARK 3 CHIRALITY : 0.041 467 REMARK 3 PLANARITY : 0.006 542 REMARK 3 DIHEDRAL : 14.474 1151 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9527 72.1675 16.2542 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.2071 REMARK 3 T33: 0.1563 T12: -0.0064 REMARK 3 T13: -0.0071 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.9143 L22: 1.9385 REMARK 3 L33: 1.5075 L12: 0.0551 REMARK 3 L13: 0.3370 L23: 0.0781 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.0158 S13: -0.0460 REMARK 3 S21: -0.0859 S22: 0.0805 S23: 0.2704 REMARK 3 S31: -0.0010 S32: -0.3662 S33: -0.0499 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9107 81.5076 29.8612 REMARK 3 T TENSOR REMARK 3 T11: 0.2392 T22: 0.1444 REMARK 3 T33: 0.1558 T12: 0.0240 REMARK 3 T13: 0.0530 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.6639 L22: 1.2218 REMARK 3 L33: 2.0923 L12: -0.3723 REMARK 3 L13: 0.7366 L23: 0.3151 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.0709 S13: 0.1124 REMARK 3 S21: 0.2427 S22: -0.0040 S23: 0.1530 REMARK 3 S31: -0.2904 S32: -0.2235 S33: -0.0134 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2949 71.6910 34.5313 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.1631 REMARK 3 T33: 0.1538 T12: -0.0059 REMARK 3 T13: -0.0414 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.6404 L22: 2.0933 REMARK 3 L33: 1.7335 L12: -0.2707 REMARK 3 L13: -0.1288 L23: -0.6255 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.1321 S13: 0.0252 REMARK 3 S21: 0.3181 S22: -0.0219 S23: -0.1948 REMARK 3 S31: -0.0656 S32: 0.2694 S33: 0.0084 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6526 69.2203 28.2012 REMARK 3 T TENSOR REMARK 3 T11: 0.1366 T22: 0.1474 REMARK 3 T33: 0.1337 T12: 0.0205 REMARK 3 T13: 0.0267 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.7096 L22: 1.5674 REMARK 3 L33: 1.7325 L12: 0.0430 REMARK 3 L13: -0.1003 L23: -0.1145 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: -0.0661 S13: 0.0098 REMARK 3 S21: 0.1963 S22: 0.0571 S23: 0.1096 REMARK 3 S31: -0.0621 S32: -0.1756 S33: -0.0043 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4109 61.6808 20.5545 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.1159 REMARK 3 T33: 0.1638 T12: -0.0161 REMARK 3 T13: 0.0199 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.3299 L22: 0.5187 REMARK 3 L33: 1.1916 L12: -0.1334 REMARK 3 L13: -0.0527 L23: -0.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: 0.0195 S13: -0.1252 REMARK 3 S21: -0.0855 S22: 0.0953 S23: 0.0446 REMARK 3 S31: 0.2934 S32: -0.0601 S33: -0.0174 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.9227 65.2571 5.3951 REMARK 3 T TENSOR REMARK 3 T11: 0.1681 T22: 0.1384 REMARK 3 T33: 0.1655 T12: -0.0194 REMARK 3 T13: -0.0057 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.6906 L22: 1.6144 REMARK 3 L33: 1.5176 L12: -0.1549 REMARK 3 L13: 0.3884 L23: 0.1200 REMARK 3 S TENSOR REMARK 3 S11: 0.1184 S12: 0.0108 S13: -0.2788 REMARK 3 S21: -0.0060 S22: -0.0177 S23: -0.0067 REMARK 3 S31: 0.2864 S32: -0.0627 S33: -0.0722 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.9592 95.2509 21.1961 REMARK 3 T TENSOR REMARK 3 T11: 0.2368 T22: 0.2138 REMARK 3 T33: 0.2049 T12: -0.0297 REMARK 3 T13: 0.0577 T23: -0.0685 REMARK 3 L TENSOR REMARK 3 L11: 1.6061 L22: 1.9270 REMARK 3 L33: 2.4105 L12: 0.3352 REMARK 3 L13: 0.8573 L23: 0.6434 REMARK 3 S TENSOR REMARK 3 S11: 0.1155 S12: -0.3034 S13: 0.2727 REMARK 3 S21: 0.0907 S22: -0.1067 S23: 0.0873 REMARK 3 S31: -0.4383 S32: -0.1349 S33: -0.0145 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 307 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2554 72.7208 3.4919 REMARK 3 T TENSOR REMARK 3 T11: 0.1337 T22: 0.1464 REMARK 3 T33: 0.1611 T12: 0.0093 REMARK 3 T13: 0.0108 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.3245 L22: 1.6992 REMARK 3 L33: 1.3659 L12: 0.7579 REMARK 3 L13: -0.0785 L23: 0.5825 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0039 S13: -0.1679 REMARK 3 S21: -0.0671 S22: 0.0265 S23: -0.2068 REMARK 3 S31: 0.0640 S32: 0.0846 S33: -0.0298 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4750 74.1383 4.7228 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.1517 REMARK 3 T33: 0.1243 T12: -0.0180 REMARK 3 T13: -0.0021 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.3314 L22: 0.3600 REMARK 3 L33: 1.0052 L12: 0.1698 REMARK 3 L13: -0.7188 L23: -0.5527 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: 0.2213 S13: -0.0033 REMARK 3 S21: -0.0727 S22: 0.1185 S23: -0.0014 REMARK 3 S31: 0.0956 S32: -0.1283 S33: -0.0463 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.689 REMARK 200 RESOLUTION RANGE LOW (A) : 47.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05569 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58990 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0 REMARK 200 STARTING MODEL: 3ATV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG-3350 W/V, 0.1 M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.96650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.93600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.93600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.96650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 383 REMARK 465 LYS A 384 REMARK 465 SER A 385 REMARK 465 GLU A 386 REMARK 465 ASN A 387 REMARK 465 VAL A 388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 190 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 269 O HOH A 501 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 361 19.23 -145.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 117 OE2 REMARK 620 2 HOH A 636 O 59.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BN8 RELATED DB: PDB REMARK 900 5BN8 CONTAINS THE APO HSP70 NBD PROTEIN. DBREF 5BN9 A 1 388 UNP P0DMV8 HS71A_HUMAN 1 388 SEQADV 5BN9 LYS A 272 UNP P0DMV8 ARG 272 ENGINEERED MUTATION SEQRES 1 A 388 MET ALA LYS ALA ALA ALA ILE GLY ILE ASP LEU GLY THR SEQRES 2 A 388 THR TYR SER CYS VAL GLY VAL PHE GLN HIS GLY LYS VAL SEQRES 3 A 388 GLU ILE ILE ALA ASN ASP GLN GLY ASN ARG THR THR PRO SEQRES 4 A 388 SER TYR VAL ALA PHE THR ASP THR GLU ARG LEU ILE GLY SEQRES 5 A 388 ASP ALA ALA LYS ASN GLN VAL ALA LEU ASN PRO GLN ASN SEQRES 6 A 388 THR VAL PHE ASP ALA LYS ARG LEU ILE GLY ARG LYS PHE SEQRES 7 A 388 GLY ASP PRO VAL VAL GLN SER ASP MET LYS HIS TRP PRO SEQRES 8 A 388 PHE GLN VAL ILE ASN ASP GLY ASP LYS PRO LYS VAL GLN SEQRES 9 A 388 VAL SER TYR LYS GLY GLU THR LYS ALA PHE TYR PRO GLU SEQRES 10 A 388 GLU ILE SER SER MET VAL LEU THR LYS MET LYS GLU ILE SEQRES 11 A 388 ALA GLU ALA TYR LEU GLY TYR PRO VAL THR ASN ALA VAL SEQRES 12 A 388 ILE THR VAL PRO ALA TYR PHE ASN ASP SER GLN ARG GLN SEQRES 13 A 388 ALA THR LYS ASP ALA GLY VAL ILE ALA GLY LEU ASN VAL SEQRES 14 A 388 LEU ARG ILE ILE ASN GLU PRO THR ALA ALA ALA ILE ALA SEQRES 15 A 388 TYR GLY LEU ASP ARG THR GLY LYS GLY GLU ARG ASN VAL SEQRES 16 A 388 LEU ILE PHE ASP LEU GLY GLY GLY THR PHE ASP VAL SER SEQRES 17 A 388 ILE LEU THR ILE ASP ASP GLY ILE PHE GLU VAL LYS ALA SEQRES 18 A 388 THR ALA GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP SEQRES 19 A 388 ASN ARG LEU VAL ASN HIS PHE VAL GLU GLU PHE LYS ARG SEQRES 20 A 388 LYS HIS LYS LYS ASP ILE SER GLN ASN LYS ARG ALA VAL SEQRES 21 A 388 ARG ARG LEU ARG THR ALA CYS GLU ARG ALA LYS LYS THR SEQRES 22 A 388 LEU SER SER SER THR GLN ALA SER LEU GLU ILE ASP SER SEQRES 23 A 388 LEU PHE GLU GLY ILE ASP PHE TYR THR SER ILE THR ARG SEQRES 24 A 388 ALA ARG PHE GLU GLU LEU CYS SER ASP LEU PHE ARG SER SEQRES 25 A 388 THR LEU GLU PRO VAL GLU LYS ALA LEU ARG ASP ALA LYS SEQRES 26 A 388 LEU ASP LYS ALA GLN ILE HIS ASP LEU VAL LEU VAL GLY SEQRES 27 A 388 GLY SER THR ARG ILE PRO LYS VAL GLN LYS LEU LEU GLN SEQRES 28 A 388 ASP PHE PHE ASN GLY ARG ASP LEU ASN LYS SER ILE ASN SEQRES 29 A 388 PRO ASP GLU ALA VAL ALA TYR GLY ALA ALA VAL GLN ALA SEQRES 30 A 388 ALA ILE LEU MET GLY ASP LYS SER GLU ASN VAL HET ADP A 401 39 HET EPE A 402 32 HET CL A 403 1 HET PO4 A 404 5 HET NA A 405 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETSYN EPE HEPES FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 CL CL 1- FORMUL 5 PO4 O4 P 3- FORMUL 6 NA NA 1+ FORMUL 7 HOH *245(H2 O) HELIX 1 AA1 GLY A 52 ASN A 57 1 6 HELIX 2 AA2 ASN A 62 GLN A 64 5 3 HELIX 3 AA3 ASP A 69 ILE A 74 1 6 HELIX 4 AA4 ASP A 80 LYS A 88 1 9 HELIX 5 AA5 TYR A 115 GLY A 136 1 22 HELIX 6 AA6 ASN A 151 ALA A 165 1 15 HELIX 7 AA7 GLU A 175 TYR A 183 1 9 HELIX 8 AA8 GLY A 184 THR A 188 5 5 HELIX 9 AA9 GLY A 229 LYS A 250 1 22 HELIX 10 AB1 ASN A 256 LEU A 274 1 19 HELIX 11 AB2 ARG A 299 CYS A 306 1 8 HELIX 12 AB3 CYS A 306 SER A 312 1 7 HELIX 13 AB4 THR A 313 LYS A 325 1 13 HELIX 14 AB5 ASP A 327 ILE A 331 5 5 HELIX 15 AB6 GLY A 338 ARG A 342 5 5 HELIX 16 AB7 ILE A 343 PHE A 354 1 12 HELIX 17 AB8 GLU A 367 GLY A 382 1 16 SHEET 1 AA1 3 LYS A 25 ILE A 28 0 SHEET 2 AA1 3 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27 SHEET 3 AA1 3 THR A 38 PRO A 39 -1 O THR A 38 N SER A 16 SHEET 1 AA2 5 LYS A 25 ILE A 28 0 SHEET 2 AA2 5 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27 SHEET 3 AA2 5 ILE A 7 ASP A 10 -1 N GLY A 8 O GLY A 19 SHEET 4 AA2 5 ASN A 141 VAL A 146 1 O VAL A 143 N ILE A 9 SHEET 5 AA2 5 ASN A 168 ASN A 174 1 O ASN A 168 N ALA A 142 SHEET 1 AA3 3 ARG A 49 ILE A 51 0 SHEET 2 AA3 3 VAL A 42 PHE A 44 -1 N ALA A 43 O LEU A 50 SHEET 3 AA3 3 THR A 66 VAL A 67 -1 O VAL A 67 N VAL A 42 SHEET 1 AA4 3 GLN A 93 ASP A 97 0 SHEET 2 AA4 3 LYS A 100 TYR A 107 -1 O LYS A 102 N ILE A 95 SHEET 3 AA4 3 GLU A 110 PHE A 114 -1 O GLU A 110 N TYR A 107 SHEET 1 AA5 4 ILE A 216 ASP A 225 0 SHEET 2 AA5 4 PHE A 205 ASP A 213 -1 N VAL A 207 O ALA A 223 SHEET 3 AA5 4 ARG A 193 LEU A 200 -1 N VAL A 195 O LEU A 210 SHEET 4 AA5 4 ASP A 333 VAL A 337 1 O VAL A 335 N LEU A 196 SHEET 1 AA6 2 GLN A 279 PHE A 288 0 SHEET 2 AA6 2 ILE A 291 THR A 298 -1 O THR A 295 N LEU A 282 LINK OE2 GLU A 117 NA NA A 405 1555 3745 2.85 LINK NA NA A 405 O HOH A 636 1555 3755 3.06 SITE 1 AC1 25 GLY A 12 THR A 13 THR A 14 TYR A 15 SITE 2 AC1 25 GLY A 201 GLY A 202 GLY A 230 GLU A 268 SITE 3 AC1 25 LYS A 271 LYS A 272 SER A 275 GLY A 338 SITE 4 AC1 25 GLY A 339 SER A 340 ARG A 342 ASP A 366 SITE 5 AC1 25 HOH A 502 HOH A 510 HOH A 547 HOH A 558 SITE 6 AC1 25 HOH A 559 HOH A 574 HOH A 606 HOH A 621 SITE 7 AC1 25 HOH A 642 SITE 1 AC2 10 ASN A 57 GLN A 58 ALA A 60 LEU A 61 SITE 2 AC2 10 LYS A 100 GLU A 117 ARG A 258 NA A 405 SITE 3 AC2 10 HOH A 638 HOH A 663 SITE 1 AC3 1 ILE A 172 SITE 1 AC4 4 LEU A 50 ILE A 51 ALA A 54 LYS A 126 SITE 1 AC5 3 GLU A 117 EPE A 402 HOH A 636 CRYST1 45.933 63.210 143.872 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006951 0.00000