HEADER CELL CYCLE 25-MAY-15 5BNB TITLE CRYSTAL STRUCTURE OF A UBE2S-UBIQUITIN CONJUGATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 S; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: E2-EPF,UBIQUITIN CARRIER PROTEIN S,UBIQUITIN-CONJUGATING COMPND 5 ENZYME E2-24 KDA,UBIQUITIN-CONJUGATING ENZYME E2-EPF5,UBIQUITIN- COMPND 6 PROTEIN LIGASE S; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: POLYUBIQUITIN-B; COMPND 12 CHAIN: E, F, G, I; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2S, E2EPF, OK/SW-CL.73; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSMT3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBB; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS UBIQUITIN-CONJUGATING ENZYME, E2 ENZYME, UBC DOMAIN, UBIQUITINATION, KEYWDS 2 CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.LORENZ,C.G.FEILER,J.KURIYAN REVDAT 3 10-JAN-24 5BNB 1 REMARK REVDAT 2 06-SEP-17 5BNB 1 REMARK REVDAT 1 17-FEB-16 5BNB 0 JRNL AUTH S.LORENZ,M.BHATTACHARYYA,C.FEILER,M.RAPE,J.KURIYAN JRNL TITL CRYSTAL STRUCTURE OF A UBE2S-UBIQUITIN CONJUGATE. JRNL REF PLOS ONE V. 11 47550 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 26828794 JRNL DOI 10.1371/JOURNAL.PONE.0147550 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 32915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3905 - 5.6978 0.93 2601 165 0.2340 0.2848 REMARK 3 2 5.6978 - 4.5236 0.96 2615 129 0.2222 0.2491 REMARK 3 3 4.5236 - 3.9521 0.97 2612 147 0.2118 0.2534 REMARK 3 4 3.9521 - 3.5909 0.96 2580 135 0.2367 0.3211 REMARK 3 5 3.5909 - 3.3336 0.97 2603 121 0.2435 0.2993 REMARK 3 6 3.3336 - 3.1371 0.99 2666 109 0.2570 0.3657 REMARK 3 7 3.1371 - 2.9800 0.99 2665 133 0.2569 0.3453 REMARK 3 8 2.9800 - 2.8503 0.99 2589 136 0.2690 0.3506 REMARK 3 9 2.8503 - 2.7406 0.99 2650 160 0.2728 0.3900 REMARK 3 10 2.7406 - 2.6460 0.99 2630 124 0.3013 0.3835 REMARK 3 11 2.6460 - 2.5633 0.99 2611 142 0.2987 0.3931 REMARK 3 12 2.5633 - 2.4900 0.92 2446 146 0.3001 0.3634 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6302 REMARK 3 ANGLE : 0.629 8625 REMARK 3 CHIRALITY : 0.026 1039 REMARK 3 PLANARITY : 0.003 1132 REMARK 3 DIHEDRAL : 11.230 2204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000208888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 47.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZDN REMARK 200 REMARK 200 REMARK: BAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 20% PEG 4000, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.92700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 VAL B 5 REMARK 465 GLU B 6 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 SER C 3 REMARK 465 ASN C 4 REMARK 465 VAL C 5 REMARK 465 GLU C 6 REMARK 465 ASN C 7 REMARK 465 LEU C 8 REMARK 465 LEU F 73 REMARK 465 ARG F 74 REMARK 465 GLY F 75 REMARK 465 CYS F 76 REMARK 465 LEU G 73 REMARK 465 ARG G 74 REMARK 465 GLY G 75 REMARK 465 CYS G 76 REMARK 465 MET I 1 REMARK 465 GLN I 2 REMARK 465 ALA I 46 REMARK 465 GLY I 47 REMARK 465 LYS I 48 REMARK 465 GLN I 49 REMARK 465 LEU I 50 REMARK 465 GLU I 51 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 SER D 3 REMARK 465 ASN D 4 REMARK 465 VAL D 5 REMARK 465 GLU D 6 REMARK 465 LEU D 80 REMARK 465 THR D 81 REMARK 465 LYS D 82 REMARK 465 ILE D 83 REMARK 465 PHE D 84 REMARK 465 HIS D 85 REMARK 465 PRO D 86 REMARK 465 ASN D 87 REMARK 465 VAL D 88 REMARK 465 GLY D 89 REMARK 465 ALA D 90 REMARK 465 ASN D 91 REMARK 465 GLY D 92 REMARK 465 GLU D 93 REMARK 465 ILE D 94 REMARK 465 CYS D 95 REMARK 465 VAL D 96 REMARK 465 ASN D 97 REMARK 465 VAL D 98 REMARK 465 LEU D 99 REMARK 465 LYS D 100 REMARK 465 ARG D 101 REMARK 465 ASP D 102 REMARK 465 TRP D 103 REMARK 465 THR D 104 REMARK 465 ALA D 105 REMARK 465 GLU D 106 REMARK 465 LEU D 107 REMARK 465 GLY D 108 REMARK 465 ILE D 121 REMARK 465 HIS D 122 REMARK 465 GLU D 126 REMARK 465 SER D 127 REMARK 465 GLY D 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 SER B 127 OG REMARK 470 LEU B 129 CG CD1 CD2 REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 ILE C 12 CG1 CG2 CD1 REMARK 470 ILE C 13 CG1 CG2 CD1 REMARK 470 LYS C 18 CG CD CE NZ REMARK 470 GLU C 19 CG CD OE1 OE2 REMARK 470 LYS C 32 CG CD CE NZ REMARK 470 ASP C 39 CG OD1 OD2 REMARK 470 THR C 41 OG1 CG2 REMARK 470 GLN C 44 CG CD OE1 NE2 REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 LYS C 68 CG CD CE NZ REMARK 470 ASP C 69 CG OD1 OD2 REMARK 470 SER C 73 OG REMARK 470 VAL C 96 CG1 CG2 REMARK 470 LYS C 100 CG CD CE NZ REMARK 470 ARG C 101 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 102 CG OD1 OD2 REMARK 470 MET C 118 CG SD CE REMARK 470 GLU C 126 CG CD OE1 OE2 REMARK 470 GLU C 143 CG CD OE1 OE2 REMARK 470 GLU C 153 CG CD OE1 OE2 REMARK 470 GLN E 62 CG CD OE1 NE2 REMARK 470 LYS E 63 CG CD CE NZ REMARK 470 ARG E 74 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 18 CG CD OE1 OE2 REMARK 470 GLU F 24 CG CD OE1 OE2 REMARK 470 LYS F 48 CG CD CE NZ REMARK 470 LYS F 63 CG CD CE NZ REMARK 470 GLU F 64 CG CD OE1 OE2 REMARK 470 ARG F 72 CG CD NE CZ NH1 NH2 REMARK 470 MET G 1 CG SD CE REMARK 470 GLN G 2 CG CD OE1 NE2 REMARK 470 ILE G 3 CG1 CG2 CD1 REMARK 470 PHE G 4 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS G 6 CG CD CE NZ REMARK 470 THR G 7 OG1 CG2 REMARK 470 LEU G 8 CG CD1 CD2 REMARK 470 THR G 9 OG1 CG2 REMARK 470 LYS G 11 CG CD CE NZ REMARK 470 THR G 14 OG1 CG2 REMARK 470 LEU G 15 CG CD1 CD2 REMARK 470 GLU G 16 CG CD OE1 OE2 REMARK 470 VAL G 17 CG1 CG2 REMARK 470 SER G 20 OG REMARK 470 THR G 22 OG1 CG2 REMARK 470 ASN G 25 CG OD1 ND2 REMARK 470 VAL G 26 CG1 CG2 REMARK 470 LYS G 27 CG CD CE NZ REMARK 470 LYS G 29 CG CD CE NZ REMARK 470 GLN G 31 CG CD OE1 NE2 REMARK 470 ASP G 32 CG OD1 OD2 REMARK 470 LYS G 33 CG CD CE NZ REMARK 470 GLU G 34 CG CD OE1 OE2 REMARK 470 ILE G 36 CG1 CG2 CD1 REMARK 470 LEU G 43 CG CD1 CD2 REMARK 470 LYS G 48 CG CD CE NZ REMARK 470 GLU G 51 CG CD OE1 OE2 REMARK 470 ARG G 54 CG CD NE CZ NH1 NH2 REMARK 470 THR G 55 OG1 CG2 REMARK 470 SER G 57 OG REMARK 470 ASN G 60 CG OD1 ND2 REMARK 470 ILE G 61 CG1 CG2 CD1 REMARK 470 GLN G 62 CG CD OE1 NE2 REMARK 470 LYS G 63 CG CD CE NZ REMARK 470 LEU G 67 CG CD1 CD2 REMARK 470 LEU G 71 CG CD1 CD2 REMARK 470 ARG G 72 CG CD NE CZ NH1 NH2 REMARK 470 ILE I 3 CG1 CG2 CD1 REMARK 470 LYS I 6 CG CD CE NZ REMARK 470 LYS I 11 CG CD CE NZ REMARK 470 GLU I 16 CG CD OE1 OE2 REMARK 470 GLU I 18 CG CD OE1 OE2 REMARK 470 SER I 20 OG REMARK 470 ASP I 21 CG OD1 OD2 REMARK 470 GLU I 24 CG CD OE1 OE2 REMARK 470 ASN I 25 CG OD1 ND2 REMARK 470 VAL I 26 CG1 CG2 REMARK 470 LYS I 27 CG CD CE NZ REMARK 470 LYS I 29 CG CD CE NZ REMARK 470 ILE I 30 CG1 CG2 CD1 REMARK 470 ASP I 32 CG OD1 OD2 REMARK 470 LYS I 33 CG CD CE NZ REMARK 470 ASP I 39 CG OD1 OD2 REMARK 470 ARG I 42 CG CD NE CZ NH1 NH2 REMARK 470 LEU I 43 CG CD1 CD2 REMARK 470 ILE I 44 CG1 CG2 CD1 REMARK 470 ASN I 60 CG OD1 ND2 REMARK 470 GLN I 62 CG CD OE1 NE2 REMARK 470 LYS I 63 CG CD CE NZ REMARK 470 GLU I 64 CG CD OE1 OE2 REMARK 470 LEU I 67 CG CD1 CD2 REMARK 470 LEU I 69 CG CD1 CD2 REMARK 470 VAL I 70 CG1 CG2 REMARK 470 LEU I 71 CG CD1 CD2 REMARK 470 ARG I 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG I 74 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 7 CG OD1 ND2 REMARK 470 ILE D 12 CG1 CG2 CD1 REMARK 470 ILE D 13 CG1 CG2 CD1 REMARK 470 LEU D 15 CG CD1 CD2 REMARK 470 VAL D 16 CG1 CG2 REMARK 470 LYS D 18 CG CD CE NZ REMARK 470 GLU D 19 CG CD OE1 OE2 REMARK 470 LEU D 23 CG CD1 CD2 REMARK 470 ASN D 36 CG OD1 ND2 REMARK 470 GLU D 38 CG CD OE1 OE2 REMARK 470 ASP D 39 CG OD1 OD2 REMARK 470 LEU D 40 CG CD1 CD2 REMARK 470 GLU D 48 CG CD OE1 OE2 REMARK 470 GLU D 51 CG CD OE1 OE2 REMARK 470 LEU D 59 CG CD1 CD2 REMARK 470 PHE D 60 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG D 61 CG CD NE CZ NH1 NH2 REMARK 470 MET D 62 CG SD CE REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 LEU D 64 CG CD1 CD2 REMARK 470 LEU D 65 CG CD1 CD2 REMARK 470 LEU D 66 CG CD1 CD2 REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 ASP D 69 CG OD1 OD2 REMARK 470 SER D 73 OG REMARK 470 LYS D 76 CG CD CE NZ REMARK 470 PHE D 79 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE D 109 CG1 CG2 CD1 REMARK 470 ARG D 110 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 113 CG CD1 CD2 REMARK 470 LEU D 114 CG CD1 CD2 REMARK 470 ILE D 116 CG1 CG2 CD1 REMARK 470 LYS D 117 CG CD CE NZ REMARK 470 LEU D 120 CG CD1 CD2 REMARK 470 ASN D 124 CG OD1 ND2 REMARK 470 GLU D 131 CG CD OE1 OE2 REMARK 470 ARG D 135 CG CD NE CZ NH1 NH2 REMARK 470 TYR D 141 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 142 CG CD OE1 OE2 REMARK 470 GLU D 143 CG CD OE1 OE2 REMARK 470 ARG D 147 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 149 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 150 CG CD1 CD2 REMARK 470 GLU D 153 CG CD OE1 OE2 REMARK 470 HIS D 155 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 71.14 -163.09 REMARK 500 ASP A 69 32.70 -97.04 REMARK 500 VAL A 96 74.30 -103.58 REMARK 500 ASP A 102 35.53 -98.07 REMARK 500 ASN A 140 84.37 -156.45 REMARK 500 ASP B 39 98.63 -170.32 REMARK 500 ASN B 140 78.54 -162.57 REMARK 500 LEU C 107 96.92 -69.57 REMARK 500 ASN C 140 89.45 -170.45 REMARK 500 PRO G 19 4.88 -67.20 REMARK 500 GLN I 62 -156.21 -123.41 REMARK 500 PRO D 54 0.78 -65.52 REMARK 500 LEU D 136 51.78 -98.79 REMARK 500 ASN D 140 72.12 -152.84 REMARK 500 ILE D 154 -81.30 -106.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 5BNB A 1 156 UNP Q16763 UBE2S_HUMAN 1 156 DBREF 5BNB B 1 156 UNP Q16763 UBE2S_HUMAN 1 156 DBREF 5BNB C 1 156 UNP Q16763 UBE2S_HUMAN 1 156 DBREF 5BNB E 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5BNB F 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5BNB G 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5BNB I 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5BNB D 1 156 UNP Q16763 UBE2S_HUMAN 1 156 SEQADV 5BNB MET A 118 UNP Q16763 CYS 118 ENGINEERED MUTATION SEQADV 5BNB MET B 118 UNP Q16763 CYS 118 ENGINEERED MUTATION SEQADV 5BNB MET C 118 UNP Q16763 CYS 118 ENGINEERED MUTATION SEQADV 5BNB CYS E 76 UNP P0CG47 GLY 76 ENGINEERED MUTATION SEQADV 5BNB CYS F 76 UNP P0CG47 GLY 76 ENGINEERED MUTATION SEQADV 5BNB CYS G 76 UNP P0CG47 GLY 76 ENGINEERED MUTATION SEQADV 5BNB CYS I 76 UNP P0CG47 GLY 76 ENGINEERED MUTATION SEQADV 5BNB MET D 118 UNP Q16763 CYS 118 ENGINEERED MUTATION SEQRES 1 A 156 MET ASN SER ASN VAL GLU ASN LEU PRO PRO HIS ILE ILE SEQRES 2 A 156 ARG LEU VAL TYR LYS GLU VAL THR THR LEU THR ALA ASP SEQRES 3 A 156 PRO PRO ASP GLY ILE LYS VAL PHE PRO ASN GLU GLU ASP SEQRES 4 A 156 LEU THR ASP LEU GLN VAL THR ILE GLU GLY PRO GLU GLY SEQRES 5 A 156 THR PRO TYR ALA GLY GLY LEU PHE ARG MET LYS LEU LEU SEQRES 6 A 156 LEU GLY LYS ASP PHE PRO ALA SER PRO PRO LYS GLY TYR SEQRES 7 A 156 PHE LEU THR LYS ILE PHE HIS PRO ASN VAL GLY ALA ASN SEQRES 8 A 156 GLY GLU ILE CYS VAL ASN VAL LEU LYS ARG ASP TRP THR SEQRES 9 A 156 ALA GLU LEU GLY ILE ARG HIS VAL LEU LEU THR ILE LYS SEQRES 10 A 156 MET LEU LEU ILE HIS PRO ASN PRO GLU SER ALA LEU ASN SEQRES 11 A 156 GLU GLU ALA GLY ARG LEU LEU LEU GLU ASN TYR GLU GLU SEQRES 12 A 156 TYR ALA ALA ARG ALA ARG LEU LEU THR GLU ILE HIS GLY SEQRES 1 B 156 MET ASN SER ASN VAL GLU ASN LEU PRO PRO HIS ILE ILE SEQRES 2 B 156 ARG LEU VAL TYR LYS GLU VAL THR THR LEU THR ALA ASP SEQRES 3 B 156 PRO PRO ASP GLY ILE LYS VAL PHE PRO ASN GLU GLU ASP SEQRES 4 B 156 LEU THR ASP LEU GLN VAL THR ILE GLU GLY PRO GLU GLY SEQRES 5 B 156 THR PRO TYR ALA GLY GLY LEU PHE ARG MET LYS LEU LEU SEQRES 6 B 156 LEU GLY LYS ASP PHE PRO ALA SER PRO PRO LYS GLY TYR SEQRES 7 B 156 PHE LEU THR LYS ILE PHE HIS PRO ASN VAL GLY ALA ASN SEQRES 8 B 156 GLY GLU ILE CYS VAL ASN VAL LEU LYS ARG ASP TRP THR SEQRES 9 B 156 ALA GLU LEU GLY ILE ARG HIS VAL LEU LEU THR ILE LYS SEQRES 10 B 156 MET LEU LEU ILE HIS PRO ASN PRO GLU SER ALA LEU ASN SEQRES 11 B 156 GLU GLU ALA GLY ARG LEU LEU LEU GLU ASN TYR GLU GLU SEQRES 12 B 156 TYR ALA ALA ARG ALA ARG LEU LEU THR GLU ILE HIS GLY SEQRES 1 C 156 MET ASN SER ASN VAL GLU ASN LEU PRO PRO HIS ILE ILE SEQRES 2 C 156 ARG LEU VAL TYR LYS GLU VAL THR THR LEU THR ALA ASP SEQRES 3 C 156 PRO PRO ASP GLY ILE LYS VAL PHE PRO ASN GLU GLU ASP SEQRES 4 C 156 LEU THR ASP LEU GLN VAL THR ILE GLU GLY PRO GLU GLY SEQRES 5 C 156 THR PRO TYR ALA GLY GLY LEU PHE ARG MET LYS LEU LEU SEQRES 6 C 156 LEU GLY LYS ASP PHE PRO ALA SER PRO PRO LYS GLY TYR SEQRES 7 C 156 PHE LEU THR LYS ILE PHE HIS PRO ASN VAL GLY ALA ASN SEQRES 8 C 156 GLY GLU ILE CYS VAL ASN VAL LEU LYS ARG ASP TRP THR SEQRES 9 C 156 ALA GLU LEU GLY ILE ARG HIS VAL LEU LEU THR ILE LYS SEQRES 10 C 156 MET LEU LEU ILE HIS PRO ASN PRO GLU SER ALA LEU ASN SEQRES 11 C 156 GLU GLU ALA GLY ARG LEU LEU LEU GLU ASN TYR GLU GLU SEQRES 12 C 156 TYR ALA ALA ARG ALA ARG LEU LEU THR GLU ILE HIS GLY SEQRES 1 E 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 E 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 E 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 E 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 E 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 E 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY CYS SEQRES 1 F 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 F 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 F 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 F 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 F 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 F 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY CYS SEQRES 1 G 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 G 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 G 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 G 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 G 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 G 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY CYS SEQRES 1 I 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 I 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 I 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 I 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 I 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 I 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY CYS SEQRES 1 D 156 MET ASN SER ASN VAL GLU ASN LEU PRO PRO HIS ILE ILE SEQRES 2 D 156 ARG LEU VAL TYR LYS GLU VAL THR THR LEU THR ALA ASP SEQRES 3 D 156 PRO PRO ASP GLY ILE LYS VAL PHE PRO ASN GLU GLU ASP SEQRES 4 D 156 LEU THR ASP LEU GLN VAL THR ILE GLU GLY PRO GLU GLY SEQRES 5 D 156 THR PRO TYR ALA GLY GLY LEU PHE ARG MET LYS LEU LEU SEQRES 6 D 156 LEU GLY LYS ASP PHE PRO ALA SER PRO PRO LYS GLY TYR SEQRES 7 D 156 PHE LEU THR LYS ILE PHE HIS PRO ASN VAL GLY ALA ASN SEQRES 8 D 156 GLY GLU ILE CYS VAL ASN VAL LEU LYS ARG ASP TRP THR SEQRES 9 D 156 ALA GLU LEU GLY ILE ARG HIS VAL LEU LEU THR ILE LYS SEQRES 10 D 156 MET LEU LEU ILE HIS PRO ASN PRO GLU SER ALA LEU ASN SEQRES 11 D 156 GLU GLU ALA GLY ARG LEU LEU LEU GLU ASN TYR GLU GLU SEQRES 12 D 156 TYR ALA ALA ARG ALA ARG LEU LEU THR GLU ILE HIS GLY FORMUL 9 HOH *60(H2 O) HELIX 1 AA1 PRO A 9 ASP A 26 1 18 HELIX 2 AA2 VAL A 96 ASP A 102 1 7 HELIX 3 AA3 GLY A 108 HIS A 122 1 15 HELIX 4 AA4 ASN A 124 ALA A 128 5 5 HELIX 5 AA5 ASN A 130 ASN A 140 1 11 HELIX 6 AA6 ASN A 140 GLY A 156 1 17 HELIX 7 AA7 PRO B 9 ASP B 26 1 18 HELIX 8 AA8 CYS B 95 ARG B 101 1 7 HELIX 9 AA9 LEU B 107 HIS B 122 1 16 HELIX 10 AB1 ASN B 130 ASN B 140 1 11 HELIX 11 AB2 ASN B 140 GLY B 156 1 17 HELIX 12 AB3 PRO C 10 ASP C 26 1 17 HELIX 13 AB4 CYS C 95 LYS C 100 1 6 HELIX 14 AB5 GLY C 108 HIS C 122 1 15 HELIX 15 AB6 ASN C 130 ASN C 140 1 11 HELIX 16 AB7 ASN C 140 GLY C 156 1 17 HELIX 17 AB8 THR E 22 GLY E 35 1 14 HELIX 18 AB9 PRO E 37 GLN E 41 5 5 HELIX 19 AC1 LEU E 56 ASN E 60 5 5 HELIX 20 AC2 THR F 22 GLY F 35 1 14 HELIX 21 AC3 PRO F 37 ASP F 39 5 3 HELIX 22 AC4 LEU F 56 ASN F 60 5 5 HELIX 23 AC5 THR G 22 GLY G 35 1 14 HELIX 24 AC6 PRO G 37 GLN G 41 5 5 HELIX 25 AC7 THR G 55 ASN G 60 1 6 HELIX 26 AC8 THR I 22 ASP I 32 1 11 HELIX 27 AC9 PRO I 37 GLN I 41 5 5 HELIX 28 AD1 LEU I 56 ASN I 60 5 5 HELIX 29 AD2 PRO D 9 ASP D 26 1 18 HELIX 30 AD3 ARG D 110 LEU D 120 1 11 HELIX 31 AD4 ASN D 130 LEU D 136 1 7 HELIX 32 AD5 ASN D 140 HIS D 155 1 16 SHEET 1 AA1 4 ILE A 31 VAL A 33 0 SHEET 2 AA1 4 ASP A 42 GLU A 48 -1 O THR A 46 N LYS A 32 SHEET 3 AA1 4 LEU A 59 LEU A 65 -1 O MET A 62 N VAL A 45 SHEET 4 AA1 4 LYS A 76 PHE A 79 -1 O LYS A 76 N LEU A 65 SHEET 1 AA2 4 ILE B 31 ASN B 36 0 SHEET 2 AA2 4 ASP B 39 GLU B 48 -1 O GLN B 44 N PHE B 34 SHEET 3 AA2 4 LEU B 59 LEU B 65 -1 O MET B 62 N VAL B 45 SHEET 4 AA2 4 LYS B 76 PHE B 79 -1 O TYR B 78 N LYS B 63 SHEET 1 AA3 4 ILE C 31 PRO C 35 0 SHEET 2 AA3 4 ASP C 42 GLU C 48 -1 O THR C 46 N LYS C 32 SHEET 3 AA3 4 LEU C 59 LEU C 65 -1 O PHE C 60 N ILE C 47 SHEET 4 AA3 4 LYS C 76 PHE C 79 -1 O TYR C 78 N LYS C 63 SHEET 1 AA4 5 THR E 12 GLU E 16 0 SHEET 2 AA4 5 GLN E 2 LYS E 6 -1 N VAL E 5 O ILE E 13 SHEET 3 AA4 5 THR E 66 LEU E 69 1 O LEU E 67 N PHE E 4 SHEET 4 AA4 5 LEU E 43 PHE E 45 -1 N ILE E 44 O HIS E 68 SHEET 5 AA4 5 LYS E 48 GLN E 49 -1 O LYS E 48 N PHE E 45 SHEET 1 AA5 5 THR F 12 GLU F 16 0 SHEET 2 AA5 5 GLN F 2 LYS F 6 -1 N VAL F 5 O ILE F 13 SHEET 3 AA5 5 SER F 65 LEU F 71 1 O LEU F 67 N LYS F 6 SHEET 4 AA5 5 GLN F 41 PHE F 45 -1 N ILE F 44 O HIS F 68 SHEET 5 AA5 5 LYS F 48 GLN F 49 -1 O LYS F 48 N PHE F 45 SHEET 1 AA6 5 THR G 12 GLU G 16 0 SHEET 2 AA6 5 GLN G 2 LYS G 6 -1 N VAL G 5 O ILE G 13 SHEET 3 AA6 5 THR G 66 LEU G 69 1 O LEU G 67 N PHE G 4 SHEET 4 AA6 5 LEU G 43 PHE G 45 -1 N ILE G 44 O HIS G 68 SHEET 5 AA6 5 LYS G 48 GLN G 49 -1 O LYS G 48 N PHE G 45 SHEET 1 AA7 4 THR I 12 THR I 14 0 SHEET 2 AA7 4 PHE I 4 THR I 7 -1 N VAL I 5 O ILE I 13 SHEET 3 AA7 4 THR I 66 VAL I 70 1 O LEU I 67 N LYS I 6 SHEET 4 AA7 4 ARG I 42 ILE I 44 -1 N ARG I 42 O VAL I 70 SHEET 1 AA8 4 ILE D 31 ASN D 36 0 SHEET 2 AA8 4 ASP D 39 GLU D 48 -1 O THR D 46 N LYS D 32 SHEET 3 AA8 4 LEU D 59 LEU D 65 -1 O MET D 62 N VAL D 45 SHEET 4 AA8 4 LYS D 76 GLY D 77 -1 O LYS D 76 N LEU D 65 SSBOND 1 CYS B 95 CYS I 76 1555 1555 2.03 SSBOND 2 CYS C 95 CYS E 76 1555 1555 2.03 CISPEP 1 PHE A 70 PRO A 71 0 2.40 CISPEP 2 PHE B 70 PRO B 71 0 -1.49 CISPEP 3 PHE C 70 PRO C 71 0 0.10 CISPEP 4 GLY G 10 LYS G 11 0 -1.77 CISPEP 5 GLY I 75 CYS I 76 0 -0.59 CISPEP 6 PHE D 70 PRO D 71 0 1.79 CRYST1 94.906 45.854 110.576 90.00 93.14 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010537 0.000000 0.000577 0.00000 SCALE2 0.000000 0.021808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009057 0.00000