HEADER HYDROLASE 26-MAY-15 5BNI TITLE PORCINE CD38 COMPLEXED WITH COMPLEXED WITH A COVALENT INTERMEDIATE, TITLE 2 RIBO-F-RIBOSE-5'-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 54-213; COMPND 5 SYNONYM: PORCINE CD38; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: CD38; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA KEYWDS COVALENT COMPLEX, ADP-RIBOSYL CYCLASE, CD38, CALCIUM SIGNALLING, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.TING,C.F.P.LEUNG,R.M.GRAEFF,H.C.LEE,Q.HAO,M.KOTAKA REVDAT 1 25-MAY-16 5BNI 0 JRNL AUTH K.Y.TING,C.F.LEUNG,R.M.GRAEFF,H.C.LEE,Q.HAO,M.KOTAKA JRNL TITL PORCINE CD38 EXHIBITS PROMINENT SECONDARY NAD(+) CYCLASE JRNL TITL 2 ACTIVITY. JRNL REF PROTEIN SCI. V. 25 650 2016 JRNL REFN ESSN 1469-896X JRNL PMID 26660500 JRNL DOI 10.1002/PRO.2859 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 15278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 819 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1102 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.07000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : 2.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.361 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.287 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3827 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5178 ; 1.443 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 2.303 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;39.205 ;24.157 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 682 ;22.275 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.881 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2851 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3825 ;12.019 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 64 ;40.462 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3812 ;21.308 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): -23.6134 12.8961 -20.8047 REMARK 3 T TENSOR REMARK 3 T11: 0.1933 T22: 0.0324 REMARK 3 T33: 0.0102 T12: 0.0048 REMARK 3 T13: 0.0071 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.6790 L22: 0.0900 REMARK 3 L33: 0.1924 L12: -0.0773 REMARK 3 L13: 0.1899 L23: 0.0837 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0246 S13: -0.0344 REMARK 3 S21: -0.0069 S22: 0.0114 S23: 0.0288 REMARK 3 S31: -0.0314 S32: -0.0052 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 54 B 284 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7894 12.5701 -52.6881 REMARK 3 T TENSOR REMARK 3 T11: 0.1877 T22: 0.0867 REMARK 3 T33: 0.0562 T12: 0.0677 REMARK 3 T13: 0.0460 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.1808 L22: 1.0006 REMARK 3 L33: 0.1124 L12: -0.1359 REMARK 3 L13: 0.1269 L23: -0.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: 0.0844 S13: 0.0854 REMARK 3 S21: -0.0796 S22: -0.1843 S23: -0.1625 REMARK 3 S31: 0.0481 S32: 0.0374 S33: 0.0751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BNI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16205 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, PEG 400, MAGNESIUM CHLORIDE, REMARK 280 TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.75350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.48650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.75350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.48650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 285 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 97 NZ LYS B 101 1.85 REMARK 500 NE ARG B 107 O HOH B 401 1.97 REMARK 500 O GLU B 109 OD2 ASP B 112 2.05 REMARK 500 O SER B 217 OD2 ASP B 256 2.11 REMARK 500 NZ LYS A 134 O HOH A 301 2.14 REMARK 500 O GLN B 139 OG1 THR B 143 2.18 REMARK 500 CB GLU B 81 O HOH B 418 2.18 REMARK 500 NH1 ARG B 181 O2'A AVW B 301 2.19 REMARK 500 OH TYR B 140 OD1 ASN B 282 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 314 O HOH B 412 2455 1.13 REMARK 500 O HOH A 393 O HOH B 446 3454 1.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 184 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 125 -1.31 76.82 REMARK 500 SER A 186 33.22 -90.29 REMARK 500 VAL A 229 -58.14 -121.45 REMARK 500 VAL B 77 -80.31 -106.66 REMARK 500 PHE B 98 -37.00 -130.74 REMARK 500 GLN B 120 119.24 -173.64 REMARK 500 ASP B 160 127.18 -38.84 REMARK 500 ASP B 161 -3.80 70.00 REMARK 500 SER B 186 41.32 -76.66 REMARK 500 VAL B 229 -64.71 -103.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 388 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 389 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 390 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 391 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 392 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH A 393 DISTANCE = 8.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide AVW B 301 and GLU B REMARK 800 230 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BNF RELATED DB: PDB REMARK 900 APO STRUCTURE OF THE SAME PROTEIN DBREF 5BNI A 54 285 UNP F1S5D9 F1S5D9_PIG 54 285 DBREF 5BNI B 54 285 UNP F1S5D9 F1S5D9_PIG 54 285 SEQRES 1 A 232 TRP ASN GLY LYS GLY SER THR VAL ASP PHE GLN GLU ILE SEQRES 2 A 232 ILE LEU ARG ARG CYS TYR THR TYR ILE ARG VAL VAL GLN SEQRES 3 A 232 PRO GLU LEU GLY ASP ARG ASP CYS GLN LYS ILE LYS LYS SEQRES 4 A 232 ALA PHE THR ASP ALA PHE ILE SER LYS ASP PRO CYS SER SEQRES 5 A 232 ALA ARG GLU GLU ASP TYR ASP LEU LEU MET LYS LEU GLY SEQRES 6 A 232 HIS GLN THR VAL PRO CYS ASP LYS THR VAL PHE TRP SER SEQRES 7 A 232 LYS THR LYS GLU LEU ALA HIS GLN TYR THR LYS THR GLN SEQRES 8 A 232 LYS GLY LEU PHE THR LEU GLU ASN THR LEU LEU GLY TYR SEQRES 9 A 232 ILE ALA ASP ASP LEU SER TRP CYS GLY LYS VAL GLY SER SEQRES 10 A 232 SER GLU ILE ASN LEU GLU SER CYS PRO ASP ARG ARG ASN SEQRES 11 A 232 CYS ASN SER ASN PHE VAL SER VAL PHE TRP ASN LEU LEU SEQRES 12 A 232 SER LYS ARG PHE ALA GLU ASN ALA CYS GLY MET VAL GLN SEQRES 13 A 232 VAL PHE LEU ASN GLY SER ILE SER ASN ALA PHE ASP LYS SEQRES 14 A 232 THR SER THR PHE GLY ARG VAL GLU VAL HIS SER LEU GLN SEQRES 15 A 232 PRO SER LYS VAL HIS THR LEU LYS ALA TRP VAL ILE HIS SEQRES 16 A 232 ASP SER GLY LYS THR PRO ARG ASP THR CYS SER GLY SER SEQRES 17 A 232 SER ILE ASN GLU LEU GLN LEU ILE LEU ARG GLY LYS ASN SEQRES 18 A 232 ILE LYS PHE THR CYS GLN GLU ASN TYR ARG PRO SEQRES 1 B 232 TRP ASN GLY LYS GLY SER THR VAL ASP PHE GLN GLU ILE SEQRES 2 B 232 ILE LEU ARG ARG CYS TYR THR TYR ILE ARG VAL VAL GLN SEQRES 3 B 232 PRO GLU LEU GLY ASP ARG ASP CYS GLN LYS ILE LYS LYS SEQRES 4 B 232 ALA PHE THR ASP ALA PHE ILE SER LYS ASP PRO CYS SER SEQRES 5 B 232 ALA ARG GLU GLU ASP TYR ASP LEU LEU MET LYS LEU GLY SEQRES 6 B 232 HIS GLN THR VAL PRO CYS ASP LYS THR VAL PHE TRP SER SEQRES 7 B 232 LYS THR LYS GLU LEU ALA HIS GLN TYR THR LYS THR GLN SEQRES 8 B 232 LYS GLY LEU PHE THR LEU GLU ASN THR LEU LEU GLY TYR SEQRES 9 B 232 ILE ALA ASP ASP LEU SER TRP CYS GLY LYS VAL GLY SER SEQRES 10 B 232 SER GLU ILE ASN LEU GLU SER CYS PRO ASP ARG ARG ASN SEQRES 11 B 232 CYS ASN SER ASN PHE VAL SER VAL PHE TRP ASN LEU LEU SEQRES 12 B 232 SER LYS ARG PHE ALA GLU ASN ALA CYS GLY MET VAL GLN SEQRES 13 B 232 VAL PHE LEU ASN GLY SER ILE SER ASN ALA PHE ASP LYS SEQRES 14 B 232 THR SER THR PHE GLY ARG VAL GLU VAL HIS SER LEU GLN SEQRES 15 B 232 PRO SER LYS VAL HIS THR LEU LYS ALA TRP VAL ILE HIS SEQRES 16 B 232 ASP SER GLY LYS THR PRO ARG ASP THR CYS SER GLY SER SEQRES 17 B 232 SER ILE ASN GLU LEU GLN LEU ILE LEU ARG GLY LYS ASN SEQRES 18 B 232 ILE LYS PHE THR CYS GLN GLU ASN TYR ARG PRO HET AVW B 301 35 HETNAM AVW [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4- HETNAM 2 AVW DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4S)-4- HETNAM 3 AVW FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETNAM 4 AVW DIPHOSPHATE HETSYN AVW RIBOSYL-2-FLUORO-DEOXY-ADENOSINE DIPHOSPHATE RIBOSE, HETSYN 2 AVW RIBO-2'F-ADPR FORMUL 3 AVW C15 H22 F N5 O12 P2 FORMUL 4 HOH *140(H2 O) HELIX 1 AA1 ASP A 62 VAL A 77 1 16 HELIX 2 AA2 GLN A 79 GLY A 83 5 5 HELIX 3 AA3 ASP A 86 ILE A 99 1 14 HELIX 4 AA4 ARG A 107 ASP A 110 5 4 HELIX 5 AA5 TYR A 111 GLY A 118 1 8 HELIX 6 AA6 LYS A 134 GLN A 139 5 6 HELIX 7 AA7 THR A 149 ASN A 152 5 4 HELIX 8 AA8 THR A 153 ASP A 160 1 8 HELIX 9 AA9 ASN A 187 ASN A 203 1 17 HELIX 10 AB1 SER A 224 VAL A 229 1 6 HELIX 11 AB2 GLU A 230 LEU A 234 5 5 HELIX 12 AB3 GLY A 260 LYS A 273 1 14 HELIX 13 AB4 ASP B 62 VAL B 77 1 16 HELIX 14 AB5 GLN B 79 ARG B 85 5 7 HELIX 15 AB6 ASP B 86 ILE B 99 1 14 HELIX 16 AB7 ARG B 107 ASP B 110 5 4 HELIX 17 AB8 TYR B 111 GLY B 118 1 8 HELIX 18 AB9 THR B 133 THR B 141 1 9 HELIX 19 AC1 THR B 149 ASN B 152 5 4 HELIX 20 AC2 THR B 153 ASP B 160 1 8 HELIX 21 AC3 ASN B 187 ASN B 203 1 17 HELIX 22 AC4 SER B 224 VAL B 229 1 6 HELIX 23 AC5 VAL B 229 LEU B 234 1 6 HELIX 24 AC6 GLY B 260 LYS B 273 1 14 SHEET 1 AA1 4 THR A 127 TRP A 130 0 SHEET 2 AA1 4 GLY A 206 ASN A 213 1 O PHE A 211 N PHE A 129 SHEET 3 AA1 4 VAL A 239 HIS A 248 1 O LYS A 243 N VAL A 208 SHEET 4 AA1 4 LYS A 276 TYR A 283 1 O THR A 278 N ALA A 244 SHEET 1 AA2 4 VAL B 128 SER B 131 0 SHEET 2 AA2 4 GLY B 206 ASN B 213 1 O GLN B 209 N PHE B 129 SHEET 3 AA2 4 VAL B 239 HIS B 248 1 O TRP B 245 N LEU B 212 SHEET 4 AA2 4 LYS B 276 TYR B 283 1 O THR B 278 N ALA B 244 SSBOND 1 CYS A 71 CYS A 87 1555 1555 2.05 SSBOND 2 CYS A 104 CYS A 184 1555 1555 2.02 SSBOND 3 CYS A 124 CYS A 205 1555 1555 2.04 SSBOND 4 CYS A 165 CYS A 178 1555 1555 2.07 SSBOND 5 CYS A 258 CYS A 279 1555 1555 2.07 SSBOND 6 CYS B 71 CYS B 87 1555 1555 2.02 SSBOND 7 CYS B 104 CYS B 184 1555 1555 2.04 SSBOND 8 CYS B 124 CYS B 205 1555 1555 2.03 SSBOND 9 CYS B 165 CYS B 178 1555 1555 2.02 SSBOND 10 CYS B 258 CYS B 279 1555 1555 2.03 LINK OE2 GLU B 230 C1'N AVW B 301 1555 1555 1.54 SITE 1 AC1 19 PHE B 129 TRP B 130 SER B 131 LYS B 132 SITE 2 AC1 19 LEU B 150 ARG B 181 TRP B 193 SER B 197 SITE 3 AC1 19 PHE B 200 ALA B 201 SER B 224 THR B 225 SITE 4 AC1 19 PHE B 226 VAL B 229 VAL B 231 HIS B 232 SITE 5 AC1 19 SER B 233 LEU B 234 HOH B 433 CRYST1 69.507 104.973 63.785 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015678 0.00000