HEADER CHAPERONE/DNA BINDING PROTEIN 26-MAY-15 5BNX TITLE CRYSTAL STRUCTURE OF HUMAN MCM2 HBD AND ASF1B CHAPERONING A HISTONE TITLE 2 H3.3-H4 DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 58-136; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA REPLICATION LICENSING FACTOR MCM2; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: UNP RESIDUES 61-130; COMPND 14 SYNONYM: MINICHROMOSOME MAINTENANCE PROTEIN 2 HOMOLOG, NUCLEAR COMPND 15 PROTEIN BM28; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: HISTONE CHAPERONE ASF1B; COMPND 19 CHAIN: D; COMPND 20 FRAGMENT: UNP RESIDUES 1-158; COMPND 21 SYNONYM: ANTI-SILENCING FUNCTION PROTEIN 1 HOMOLOG B, HASF1B, CCG1- COMPND 22 INTERACTING FACTOR A-II, HCIA-II; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3F3A, H3.3A, H3F3, PP781, H3F3B, H3.3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HIST1H4A, H4/A, H4FA, HIST1H4B, H4/I, H4FI, HIST1H4C, H4/G, SOURCE 13 H4FG, HIST1H4D, H4/B, H4FB, HIST1H4E, H4/J, H4FJ, HIST1H4F, H4/C, SOURCE 14 H4FC, HIST1H4H, H4/H, H4FH, HIST1H4I, H4/M, H4FM, HIST1H4J, H4/E, SOURCE 15 H4FE, HIST1H4K, H4/D, H4FD, HIST1H4L, H4/K, H4FK, HIST2H4A, H4/N, SOURCE 16 H4F2, H4FN, HIST2H4, HIST2H4B, H4/O, H4FO, HIST4H4; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: MCM2, BM28, CCNL1, CDCL1, KIAA0030; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 28 ORGANISM_COMMON: HUMAN; SOURCE 29 ORGANISM_TAXID: 9606; SOURCE 30 GENE: ASF1B; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPLICATION, MCM2, ASF1, H3.3-H4 DIMER, CHAPERONE-DNA BINDING KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HUANG,D.J.PATEL REVDAT 5 06-MAR-24 5BNX 1 REMARK REVDAT 4 19-AUG-15 5BNX 1 JRNL REVDAT 3 29-JUL-15 5BNX 1 JRNL REVDAT 2 15-JUL-15 5BNX 1 JRNL REVDAT 1 17-JUN-15 5BNX 0 JRNL AUTH H.HUANG,C.B.STRMME,G.SAREDI,M.HODL,A.STRANDSBY, JRNL AUTH 2 C.GONZALEZ-AGUILERA,S.CHEN,A.GROTH,D.J.PATEL JRNL TITL A UNIQUE BINDING MODE ENABLES MCM2 TO CHAPERONE HISTONES JRNL TITL 2 H3-H4 AT REPLICATION FORKS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 618 2015 JRNL REFN ESSN 1545-9985 JRNL PMID 26167883 JRNL DOI 10.1038/NSMB.3055 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 29778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8284 - 5.1252 1.00 2737 141 0.1964 0.1840 REMARK 3 2 5.1252 - 4.0687 1.00 2631 135 0.1509 0.1696 REMARK 3 3 4.0687 - 3.5546 1.00 2572 149 0.1583 0.2065 REMARK 3 4 3.5546 - 3.2296 0.99 2614 131 0.1659 0.2131 REMARK 3 5 3.2296 - 2.9982 1.00 2554 158 0.1869 0.2379 REMARK 3 6 2.9982 - 2.8214 0.99 2541 131 0.1973 0.2153 REMARK 3 7 2.8214 - 2.6802 0.99 2555 136 0.2100 0.3147 REMARK 3 8 2.6802 - 2.5635 0.99 2512 131 0.2176 0.2282 REMARK 3 9 2.5635 - 2.4648 0.99 2572 121 0.2285 0.2974 REMARK 3 10 2.4648 - 2.3798 0.98 2519 140 0.2409 0.2847 REMARK 3 11 2.3798 - 2.3054 0.96 2458 140 0.2688 0.3123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3017 REMARK 3 ANGLE : 1.254 4079 REMARK 3 CHIRALITY : 0.091 456 REMARK 3 PLANARITY : 0.006 538 REMARK 3 DIHEDRAL : 16.165 1136 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.4615 13.8872 -11.8785 REMARK 3 T TENSOR REMARK 3 T11: 0.5488 T22: 0.3857 REMARK 3 T33: 0.1553 T12: 0.0165 REMARK 3 T13: 0.0369 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 8.9370 L22: 3.4549 REMARK 3 L33: 4.0970 L12: 0.2175 REMARK 3 L13: 4.1343 L23: -1.4835 REMARK 3 S TENSOR REMARK 3 S11: 0.1172 S12: -0.0143 S13: -0.3214 REMARK 3 S21: -0.0341 S22: -0.1194 S23: -0.3666 REMARK 3 S31: 0.4016 S32: 0.5306 S33: -0.0556 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.3138 31.1122 -14.8364 REMARK 3 T TENSOR REMARK 3 T11: 0.5032 T22: 0.3293 REMARK 3 T33: 0.3326 T12: -0.1489 REMARK 3 T13: 0.0762 T23: -0.0759 REMARK 3 L TENSOR REMARK 3 L11: 3.5687 L22: 7.4846 REMARK 3 L33: 4.3135 L12: -2.6509 REMARK 3 L13: 1.8686 L23: -2.9393 REMARK 3 S TENSOR REMARK 3 S11: -0.1250 S12: -0.2303 S13: 0.5039 REMARK 3 S21: 0.4460 S22: 0.1360 S23: 0.1323 REMARK 3 S31: -0.6823 S32: 0.1670 S33: -0.0448 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9060 37.2853 -17.8839 REMARK 3 T TENSOR REMARK 3 T11: 0.6385 T22: 0.4238 REMARK 3 T33: 0.3010 T12: -0.1448 REMARK 3 T13: 0.0986 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 2.7040 L22: 9.9187 REMARK 3 L33: 7.0811 L12: 4.8768 REMARK 3 L13: 0.6796 L23: 4.1555 REMARK 3 S TENSOR REMARK 3 S11: 0.2555 S12: 0.0559 S13: 0.1119 REMARK 3 S21: 0.2869 S22: 0.3552 S23: -0.3606 REMARK 3 S31: -0.9095 S32: 1.1291 S33: -0.5482 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6826 2.8369 -27.3751 REMARK 3 T TENSOR REMARK 3 T11: 0.5419 T22: 0.3154 REMARK 3 T33: 0.2759 T12: 0.0130 REMARK 3 T13: 0.0173 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 6.1459 L22: 5.5486 REMARK 3 L33: 4.1709 L12: 3.0099 REMARK 3 L13: 2.6881 L23: 4.0130 REMARK 3 S TENSOR REMARK 3 S11: 0.1469 S12: 0.2798 S13: -0.6039 REMARK 3 S21: -1.2305 S22: 0.7370 S23: -1.6825 REMARK 3 S31: -0.1594 S32: 0.6717 S33: -0.7142 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.9672 25.8580 -19.9974 REMARK 3 T TENSOR REMARK 3 T11: 0.4172 T22: 0.1753 REMARK 3 T33: 0.2951 T12: -0.0324 REMARK 3 T13: 0.0243 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 7.9174 L22: 2.2901 REMARK 3 L33: 9.7792 L12: -0.5386 REMARK 3 L13: -1.3852 L23: 1.8845 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: 0.1315 S13: 0.0997 REMARK 3 S21: -0.7260 S22: 0.0990 S23: 0.8158 REMARK 3 S31: -0.4416 S32: -0.7808 S33: -0.1145 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3777 23.0758 -9.0308 REMARK 3 T TENSOR REMARK 3 T11: 0.4820 T22: 0.5962 REMARK 3 T33: 0.3713 T12: -0.1457 REMARK 3 T13: 0.0220 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 6.7167 L22: 4.7313 REMARK 3 L33: 5.4088 L12: -1.3923 REMARK 3 L13: 4.6178 L23: -2.5207 REMARK 3 S TENSOR REMARK 3 S11: 0.3850 S12: -0.2036 S13: 0.1381 REMARK 3 S21: 0.4360 S22: -0.3902 S23: -0.7978 REMARK 3 S31: -0.1321 S32: 0.8745 S33: 0.1225 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.2417 40.0792 -2.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.5417 T22: 0.5762 REMARK 3 T33: 0.3239 T12: -0.1703 REMARK 3 T13: 0.0283 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 5.6111 L22: 5.9641 REMARK 3 L33: 7.3695 L12: -5.7954 REMARK 3 L13: -6.4602 L23: 6.6693 REMARK 3 S TENSOR REMARK 3 S11: -0.2046 S12: -0.9888 S13: 0.1721 REMARK 3 S21: 0.6378 S22: 0.4982 S23: 0.0009 REMARK 3 S31: 0.9502 S32: -0.4183 S33: 0.0256 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 68 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.2249 22.5177 -23.3791 REMARK 3 T TENSOR REMARK 3 T11: 0.7252 T22: 0.6815 REMARK 3 T33: 0.3785 T12: 0.0270 REMARK 3 T13: -0.1458 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 5.1737 L22: 9.5456 REMARK 3 L33: 4.7199 L12: -3.3793 REMARK 3 L13: 2.8741 L23: -6.6557 REMARK 3 S TENSOR REMARK 3 S11: -0.4495 S12: 0.5916 S13: -0.2012 REMARK 3 S21: -1.5011 S22: 0.9487 S23: 1.0714 REMARK 3 S31: 0.5032 S32: -1.8227 S33: -0.5961 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 82 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.7439 7.0815 -10.2520 REMARK 3 T TENSOR REMARK 3 T11: 0.5264 T22: 0.3763 REMARK 3 T33: 0.1828 T12: 0.0131 REMARK 3 T13: 0.0565 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.7687 L22: 6.4361 REMARK 3 L33: 5.2736 L12: -1.2994 REMARK 3 L13: 2.2620 L23: -0.9663 REMARK 3 S TENSOR REMARK 3 S11: 0.2944 S12: -0.1511 S13: -0.2227 REMARK 3 S21: -0.1639 S22: -0.2280 S23: -0.1416 REMARK 3 S31: 0.5594 S32: 0.2459 S33: -0.0664 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 99 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5434 24.7765 -0.0558 REMARK 3 T TENSOR REMARK 3 T11: 0.7341 T22: 0.9436 REMARK 3 T33: 0.8298 T12: -0.1615 REMARK 3 T13: -0.3580 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 6.3987 L22: 7.2794 REMARK 3 L33: 1.2883 L12: -1.0382 REMARK 3 L13: -2.9175 L23: 0.9998 REMARK 3 S TENSOR REMARK 3 S11: 0.6422 S12: -0.0537 S13: -0.0179 REMARK 3 S21: 1.2153 S22: 0.0507 S23: -0.5648 REMARK 3 S31: 0.0033 S32: 1.0825 S33: -0.7886 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5355 47.6270 2.3189 REMARK 3 T TENSOR REMARK 3 T11: 0.4496 T22: 0.4343 REMARK 3 T33: -0.0656 T12: -0.1396 REMARK 3 T13: 0.0259 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 3.8225 L22: 2.9831 REMARK 3 L33: 5.3079 L12: -0.8862 REMARK 3 L13: -0.1555 L23: -1.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.2655 S12: -0.6044 S13: -0.2610 REMARK 3 S21: 0.0826 S22: -0.3884 S23: 0.3741 REMARK 3 S31: 0.2900 S32: 0.4691 S33: 0.4379 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 12 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.8228 55.4788 -5.3065 REMARK 3 T TENSOR REMARK 3 T11: 0.3302 T22: 0.2831 REMARK 3 T33: 0.2186 T12: -0.0321 REMARK 3 T13: 0.0441 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 3.7944 L22: 0.8598 REMARK 3 L33: 8.2805 L12: 0.4393 REMARK 3 L13: 2.0356 L23: -0.3152 REMARK 3 S TENSOR REMARK 3 S11: 0.1427 S12: -0.4148 S13: 0.2482 REMARK 3 S21: -0.0884 S22: 0.0467 S23: 0.0539 REMARK 3 S31: -0.2083 S32: -0.4520 S33: -0.1797 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 38 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0438 49.4790 -14.7102 REMARK 3 T TENSOR REMARK 3 T11: 0.4119 T22: 0.3932 REMARK 3 T33: 0.2311 T12: -0.0367 REMARK 3 T13: 0.0095 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 4.0105 L22: 1.5705 REMARK 3 L33: 2.7440 L12: 1.2778 REMARK 3 L13: 1.4748 L23: 1.6552 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: 0.4487 S13: -0.1436 REMARK 3 S21: -0.1108 S22: 0.0656 S23: -0.0442 REMARK 3 S31: 0.4482 S32: 0.9554 S33: -0.3121 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 63 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6382 52.2147 -11.0828 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.3547 REMARK 3 T33: 0.1923 T12: -0.0515 REMARK 3 T13: 0.0173 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.1973 L22: 1.0154 REMARK 3 L33: 8.4438 L12: 0.5664 REMARK 3 L13: 0.4635 L23: 0.5795 REMARK 3 S TENSOR REMARK 3 S11: 0.1773 S12: -0.0319 S13: 0.0335 REMARK 3 S21: -0.1423 S22: 0.1115 S23: -0.0270 REMARK 3 S31: -0.3858 S32: 0.4002 S33: -0.1663 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 104 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.0732 47.1404 -13.4199 REMARK 3 T TENSOR REMARK 3 T11: 0.5154 T22: 0.2716 REMARK 3 T33: 0.2393 T12: -0.0414 REMARK 3 T13: 0.0078 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 5.0674 L22: 2.7649 REMARK 3 L33: 3.6950 L12: -0.2203 REMARK 3 L13: 0.6174 L23: -2.3978 REMARK 3 S TENSOR REMARK 3 S11: 0.5941 S12: 0.5978 S13: -0.0628 REMARK 3 S21: -0.4403 S22: -0.1966 S23: 0.2296 REMARK 3 S31: 1.1024 S32: 0.4570 S33: -0.3498 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 118 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.9359 56.2366 -32.6090 REMARK 3 T TENSOR REMARK 3 T11: 0.7672 T22: 1.4560 REMARK 3 T33: 0.6625 T12: 0.1038 REMARK 3 T13: -0.1956 T23: 0.1632 REMARK 3 L TENSOR REMARK 3 L11: 3.7046 L22: 3.6209 REMARK 3 L33: 2.6052 L12: -2.0893 REMARK 3 L13: -0.6881 L23: 2.4383 REMARK 3 S TENSOR REMARK 3 S11: -0.2970 S12: 1.6911 S13: -0.8213 REMARK 3 S21: -1.5005 S22: -0.3391 S23: 2.3809 REMARK 3 S31: -1.1000 S32: -3.6488 S33: 0.2198 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 125 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.0174 55.9270 -28.9730 REMARK 3 T TENSOR REMARK 3 T11: 0.4797 T22: 0.7010 REMARK 3 T33: 0.2584 T12: -0.0255 REMARK 3 T13: -0.0670 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 1.9054 L22: 4.5861 REMARK 3 L33: 5.8378 L12: -0.9794 REMARK 3 L13: 2.7242 L23: -1.7195 REMARK 3 S TENSOR REMARK 3 S11: 0.1204 S12: 0.7345 S13: 0.3424 REMARK 3 S21: -0.6302 S22: 0.2566 S23: 0.6007 REMARK 3 S31: -0.5398 S32: -1.5484 S33: -0.2414 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 140 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8487 41.5883 -2.8596 REMARK 3 T TENSOR REMARK 3 T11: 0.4716 T22: 0.4924 REMARK 3 T33: 0.1858 T12: 0.0394 REMARK 3 T13: 0.1087 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.8896 L22: 8.8362 REMARK 3 L33: 7.3842 L12: -3.1408 REMARK 3 L13: 4.6172 L23: -3.4053 REMARK 3 S TENSOR REMARK 3 S11: 0.3992 S12: -0.9483 S13: -0.9619 REMARK 3 S21: 0.4549 S22: -0.0379 S23: -0.0548 REMARK 3 S31: 0.9202 S32: -0.3390 S33: -0.2200 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(220) SIDE REMARK 200 BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29872 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2 M SODIUM FORMATE, 0.1 M TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.80300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.60600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.60600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.80300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 57 REMARK 465 ALA A 135 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 GLY C 61 REMARK 465 PRO C 62 REMARK 465 LEU C 63 REMARK 465 GLU C 64 REMARK 465 GLU C 65 REMARK 465 GLU C 66 REMARK 465 GLU C 67 REMARK 465 GLY C 125 REMARK 465 ARG C 126 REMARK 465 GLY C 127 REMARK 465 LEU C 128 REMARK 465 GLY C 129 REMARK 465 ARG C 130 REMARK 465 ASN D 155 REMARK 465 ASN D 156 REMARK 465 MET D 157 REMARK 465 ASP D 158 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 ASP C 98 CG OD1 OD2 REMARK 470 ASP C 99 CG OD1 OD2 REMARK 470 GLU C 104 CG CD OE1 OE2 REMARK 470 GLU C 111 CG CD OE1 OE2 REMARK 470 ARG C 122 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 76 O HOH B 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 61 -83.26 -116.83 REMARK 500 HIS B 18 84.07 67.09 REMARK 500 THR C 106 -133.55 61.03 REMARK 500 ALA C 107 -60.18 -127.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BNV RELATED DB: PDB REMARK 900 RELATED ID: 5BO0 RELATED DB: PDB DBREF 5BNX A 57 135 UNP P84243 H33_HUMAN 58 136 DBREF 5BNX B 1 102 UNP P62805 H4_HUMAN 2 103 DBREF 5BNX C 61 130 UNP P49736 MCM2_HUMAN 61 130 DBREF 5BNX D 1 158 UNP Q9NVP2 ASF1B_HUMAN 1 158 SEQRES 1 A 79 SER THR GLU LEU LEU ILE ARG LYS LEU PRO PHE GLN ARG SEQRES 2 A 79 LEU VAL ARG GLU ILE ALA GLN ASP PHE LYS THR ASP LEU SEQRES 3 A 79 ARG PHE GLN SER ALA ALA ILE GLY ALA LEU GLN GLU ALA SEQRES 4 A 79 SER GLU ALA TYR LEU VAL GLY LEU PHE GLU ASP THR ASN SEQRES 5 A 79 LEU CYS ALA ILE HIS ALA LYS ARG VAL THR ILE MET PRO SEQRES 6 A 79 LYS ASP ILE GLN LEU ALA ARG ARG ILE ARG GLY GLU ARG SEQRES 7 A 79 ALA SEQRES 1 B 102 SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS GLY SEQRES 2 B 102 GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN ILE SEQRES 3 B 102 GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA ARG SEQRES 4 B 102 ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR GLU SEQRES 5 B 102 GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN VAL SEQRES 6 B 102 ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS ARG SEQRES 7 B 102 LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU LYS SEQRES 8 B 102 ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 70 GLY PRO LEU GLU GLU GLU GLU ASP GLY GLU GLU LEU ILE SEQRES 2 C 70 GLY ASP GLY MET GLU ARG ASP TYR ARG ALA ILE PRO GLU SEQRES 3 C 70 LEU ASP ALA TYR GLU ALA GLU GLY LEU ALA LEU ASP ASP SEQRES 4 C 70 GLU ASP VAL GLU GLU LEU THR ALA SER GLN ARG GLU ALA SEQRES 5 C 70 ALA GLU ARG ALA MET ARG GLN ARG ASP ARG GLU ALA GLY SEQRES 6 C 70 ARG GLY LEU GLY ARG SEQRES 1 D 158 MET ALA LYS VAL SER VAL LEU ASN VAL ALA VAL LEU GLU SEQRES 2 D 158 ASN PRO SER PRO PHE HIS SER PRO PHE ARG PHE GLU ILE SEQRES 3 D 158 SER PHE GLU CYS SER GLU ALA LEU ALA ASP ASP LEU GLU SEQRES 4 D 158 TRP LYS ILE ILE TYR VAL GLY SER ALA GLU SER GLU GLU SEQRES 5 D 158 PHE ASP GLN ILE LEU ASP SER VAL LEU VAL GLY PRO VAL SEQRES 6 D 158 PRO ALA GLY ARG HIS MET PHE VAL PHE GLN ALA ASP ALA SEQRES 7 D 158 PRO ASN PRO SER LEU ILE PRO GLU THR ASP ALA VAL GLY SEQRES 8 D 158 VAL THR VAL VAL LEU ILE THR CYS THR TYR HIS GLY GLN SEQRES 9 D 158 GLU PHE ILE ARG VAL GLY TYR TYR VAL ASN ASN GLU TYR SEQRES 10 D 158 LEU ASN PRO GLU LEU ARG GLU ASN PRO PRO MET LYS PRO SEQRES 11 D 158 ASP PHE SER GLN LEU GLN ARG ASN ILE LEU ALA SER ASN SEQRES 12 D 158 PRO ARG VAL THR ARG PHE HIS ILE ASN TRP ASP ASN ASN SEQRES 13 D 158 MET ASP HET GOL A 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *124(H2 O) HELIX 1 AA1 ARG A 63 LYS A 79 1 17 HELIX 2 AA2 GLN A 85 ALA A 114 1 30 HELIX 3 AA3 MET A 120 ARG A 131 1 12 HELIX 4 AA4 THR B 30 GLY B 41 1 12 HELIX 5 AA5 LEU B 49 ALA B 76 1 28 HELIX 6 AA6 THR B 82 GLY B 94 1 13 HELIX 7 AA7 GLY C 76 ARG C 82 5 7 HELIX 8 AA8 ILE C 84 ALA C 89 1 6 HELIX 9 AA9 ALA C 107 ALA C 124 1 18 HELIX 10 AB1 SER D 50 GLU D 52 5 3 HELIX 11 AB2 ASN D 80 ILE D 84 5 5 HELIX 12 AB3 PRO D 85 VAL D 90 1 6 HELIX 13 AB4 ASN D 119 ASN D 125 1 7 HELIX 14 AB5 ASP D 131 SER D 133 5 3 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 ARG B 45 ILE B 46 0 SHEET 2 AA2 2 GLU C 70 GLU C 71 -1 O GLU C 70 N ILE B 46 SHEET 1 AA3 5 ARG B 95 LEU B 97 0 SHEET 2 AA3 5 ARG D 145 ARG D 148 -1 O VAL D 146 N LEU B 97 SHEET 3 AA3 5 GLN D 104 TYR D 117 -1 N ARG D 108 O THR D 147 SHEET 4 AA3 5 LEU D 135 ILE D 139 -1 O GLN D 136 N GLU D 116 SHEET 5 AA3 5 SER D 16 PRO D 17 -1 N SER D 16 O ARG D 137 SHEET 1 AA4 6 ARG B 95 LEU B 97 0 SHEET 2 AA4 6 ARG D 145 ARG D 148 -1 O VAL D 146 N LEU B 97 SHEET 3 AA4 6 GLN D 104 TYR D 117 -1 N ARG D 108 O THR D 147 SHEET 4 AA4 6 GLY D 91 TYR D 101 -1 N ILE D 97 O VAL D 109 SHEET 5 AA4 6 LEU D 38 VAL D 45 -1 N ILE D 43 O LEU D 96 SHEET 6 AA4 6 ASP D 54 VAL D 62 -1 O VAL D 62 N LEU D 38 SHEET 1 AA5 3 VAL D 4 VAL D 11 0 SHEET 2 AA5 3 PHE D 22 CYS D 30 -1 O GLU D 29 N SER D 5 SHEET 3 AA5 3 GLY D 68 ALA D 76 -1 O HIS D 70 N PHE D 28 CISPEP 1 ILE C 73 GLY C 74 0 15.32 CISPEP 2 LEU C 97 ASP C 98 0 -21.53 CISPEP 3 ASN D 14 PRO D 15 0 -4.11 CISPEP 4 GLY D 63 PRO D 64 0 -3.97 SITE 1 AC1 9 ILE A 62 ARG A 63 PRO A 66 ILE B 29 SITE 2 AC1 9 THR B 30 ALA B 33 ARG B 36 HOH B 203 SITE 3 AC1 9 ARG D 69 CRYST1 110.519 110.519 95.409 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009048 0.005224 0.000000 0.00000 SCALE2 0.000000 0.010448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010481 0.00000