HEADER LYASE 27-MAY-15 5BOF TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS ENOLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE,2-PHOSPHOGLYCERATE COMPND 5 DEHYDRATASE,LAMININ-BINDING PROTEIN; COMPND 6 EC: 4.2.1.11; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: ENO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.F.WU,C.L.WANG,M.H.WU,L.HAN,X.ZHANG,J.Y.ZANG REVDAT 3 08-NOV-23 5BOF 1 REMARK REVDAT 2 16-DEC-15 5BOF 1 JRNL REVDAT 1 09-DEC-15 5BOF 0 JRNL AUTH Y.WU,C.WANG,S.LIN,M.WU,L.HAN,C.TIAN,X.ZHANG,J.ZANG JRNL TITL OCTAMERIC STRUCTURE OF STAPHYLOCOCCUS AUREUS ENOLASE IN JRNL TITL 2 COMPLEX WITH PHOSPHOENOLPYRUVATE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 2457 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26627653 JRNL DOI 10.1107/S1399004715018830 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 37015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1955 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2711 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6529 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58000 REMARK 3 B22 (A**2) : -1.58000 REMARK 3 B33 (A**2) : 3.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.365 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6660 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6270 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9030 ; 1.286 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14418 ; 0.789 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 863 ; 5.922 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 294 ;38.935 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1097 ;16.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.266 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1034 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7665 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1437 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3461 ; 2.104 ; 4.429 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3460 ; 2.103 ; 4.428 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4321 ; 3.277 ; 6.639 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4322 ; 3.277 ; 6.639 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3199 ; 2.677 ; 4.733 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3188 ; 2.674 ; 4.728 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4692 ; 4.299 ; 6.964 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7476 ; 5.682 ;35.163 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7476 ; 5.682 ;35.168 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39128 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1E9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M COBALT (II) CHLORIDE, 0.1 M MES REMARK 280 PH 6.5, 1.8 M AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 82.34300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 82.34300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 82.34300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 82.34300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 82.34300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.34300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 82.34300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.34300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 104960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -512.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 329.37200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 164.68600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 247.02900 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -82.34300 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 82.34300 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 247.02900 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 435 REMARK 465 GLU A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 THR B 43 REMARK 465 GLY B 44 REMARK 465 LEU B 435 REMARK 465 GLU B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 HIS B 439 REMARK 465 HIS B 440 REMARK 465 HIS B 441 REMARK 465 HIS B 442 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 LYS A 213 CD CE NZ REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 LYS A 434 CG CD CE NZ REMARK 470 SER B 42 OG REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ASP B 159 CG OD1 OD2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 GLU B 222 CG CD OE1 OE2 REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 ASN B 253 CG OD1 ND2 REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 GLU B 326 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 291 MG MG A 501 1.69 REMARK 500 OH TYR B 258 NE2 GLN B 274 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 74 -54.54 -123.31 REMARK 500 LYS A 142 -0.33 -151.65 REMARK 500 ILE A 151 -43.53 -130.03 REMARK 500 PRO A 161 61.91 -68.47 REMARK 500 GLU A 237 -52.05 -135.72 REMARK 500 ASP A 318 -76.93 -113.58 REMARK 500 ASN A 338 24.64 -145.61 REMARK 500 ASN A 389 43.49 39.35 REMARK 500 SER A 397 -162.35 -79.74 REMARK 500 ARG A 400 128.40 80.18 REMARK 500 PHE A 418 -123.78 57.64 REMARK 500 LYS B 142 -1.16 -150.66 REMARK 500 ILE B 151 -41.51 -136.93 REMARK 500 ASN B 253 63.41 34.54 REMARK 500 ASP B 318 -80.34 -114.62 REMARK 500 ASN B 338 20.40 -145.74 REMARK 500 ASN B 389 48.14 37.43 REMARK 500 LEU B 398 42.84 -101.98 REMARK 500 ARG B 400 125.32 80.82 REMARK 500 PHE B 418 -125.08 57.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 243 ASP A 244 149.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 244 OD2 REMARK 620 2 ASP A 318 OD2 170.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 244 OD2 REMARK 620 2 GLU B 291 OE1 83.1 REMARK 620 3 ASP B 318 OD2 167.3 84.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BOE RELATED DB: PDB DBREF 5BOF A 1 434 UNP O69174 ENO_STAAU 1 434 DBREF 5BOF B 1 434 UNP O69174 ENO_STAAU 1 434 SEQADV 5BOF LYS A 197 UNP O69174 GLN 197 ENGINEERED MUTATION SEQADV 5BOF LEU A 435 UNP O69174 EXPRESSION TAG SEQADV 5BOF GLU A 436 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS A 437 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS A 438 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS A 439 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS A 440 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS A 441 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS A 442 UNP O69174 EXPRESSION TAG SEQADV 5BOF LYS B 197 UNP O69174 GLN 197 ENGINEERED MUTATION SEQADV 5BOF LEU B 435 UNP O69174 EXPRESSION TAG SEQADV 5BOF GLU B 436 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS B 437 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS B 438 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS B 439 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS B 440 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS B 441 UNP O69174 EXPRESSION TAG SEQADV 5BOF HIS B 442 UNP O69174 EXPRESSION TAG SEQRES 1 A 442 MET PRO ILE ILE THR ASP VAL TYR ALA ARG GLU VAL LEU SEQRES 2 A 442 ASP SER ARG GLY ASN PRO THR VAL GLU VAL GLU VAL LEU SEQRES 3 A 442 THR GLU SER GLY ALA PHE GLY ARG ALA LEU VAL PRO SER SEQRES 4 A 442 GLY ALA SER THR GLY GLU HIS GLU ALA VAL GLU LEU ARG SEQRES 5 A 442 ASP GLY ASP LYS SER ARG TYR LEU GLY LYS GLY VAL THR SEQRES 6 A 442 LYS ALA VAL GLU ASN VAL ASN GLU ILE ILE ALA PRO GLU SEQRES 7 A 442 ILE ILE GLU GLY GLU PHE SER VAL LEU ASP GLN VAL SER SEQRES 8 A 442 ILE ASP LYS MET MET ILE ALA LEU ASP GLY THR PRO ASN SEQRES 9 A 442 LYS GLY LYS LEU GLY ALA ASN ALA ILE LEU GLY VAL SER SEQRES 10 A 442 ILE ALA VAL ALA ARG ALA ALA ALA ASP LEU LEU GLY GLN SEQRES 11 A 442 PRO LEU TYR LYS TYR LEU GLY GLY PHE ASN GLY LYS GLN SEQRES 12 A 442 LEU PRO VAL PRO MET MET ASN ILE VAL ASN GLY GLY SER SEQRES 13 A 442 HIS SER ASP ALA PRO ILE ALA PHE GLN GLU PHE MET ILE SEQRES 14 A 442 LEU PRO VAL GLY ALA THR THR PHE LYS GLU SER LEU ARG SEQRES 15 A 442 TRP GLY THR GLU ILE PHE HIS ASN LEU LYS SER ILE LEU SEQRES 16 A 442 SER LYS ARG GLY LEU GLU THR ALA VAL GLY ASP GLU GLY SEQRES 17 A 442 GLY PHE ALA PRO LYS PHE GLU GLY THR GLU ASP ALA VAL SEQRES 18 A 442 GLU THR ILE ILE GLN ALA ILE GLU ALA ALA GLY TYR LYS SEQRES 19 A 442 PRO GLY GLU GLU VAL PHE LEU GLY PHE ASP CYS ALA SER SEQRES 20 A 442 SER GLU PHE TYR GLU ASN GLY VAL TYR ASP TYR SER LYS SEQRES 21 A 442 PHE GLU GLY GLU HIS GLY ALA LYS ARG THR ALA ALA GLU SEQRES 22 A 442 GLN VAL ASP TYR LEU GLU GLN LEU VAL ASP LYS TYR PRO SEQRES 23 A 442 ILE ILE THR ILE GLU ASP GLY MET ASP GLU ASN ASP TRP SEQRES 24 A 442 ASP GLY TRP LYS GLN LEU THR GLU ARG ILE GLY ASP ARG SEQRES 25 A 442 VAL GLN LEU VAL GLY ASP ASP LEU PHE VAL THR ASN THR SEQRES 26 A 442 GLU ILE LEU ALA LYS GLY ILE GLU ASN GLY ILE GLY ASN SEQRES 27 A 442 SER ILE LEU ILE LYS VAL ASN GLN ILE GLY THR LEU THR SEQRES 28 A 442 GLU THR PHE ASP ALA ILE GLU MET ALA GLN LYS ALA GLY SEQRES 29 A 442 TYR THR ALA VAL VAL SER HIS ARG SER GLY GLU THR GLU SEQRES 30 A 442 ASP THR THR ILE ALA ASP ILE ALA VAL ALA THR ASN ALA SEQRES 31 A 442 GLY GLN ILE LYS THR GLY SER LEU SER ARG THR ASP ARG SEQRES 32 A 442 ILE ALA LYS TYR ASN GLN LEU LEU ARG ILE GLU ASP GLU SEQRES 33 A 442 LEU PHE GLU THR ALA LYS TYR ASP GLY ILE LYS SER PHE SEQRES 34 A 442 TYR ASN LEU ASP LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 442 MET PRO ILE ILE THR ASP VAL TYR ALA ARG GLU VAL LEU SEQRES 2 B 442 ASP SER ARG GLY ASN PRO THR VAL GLU VAL GLU VAL LEU SEQRES 3 B 442 THR GLU SER GLY ALA PHE GLY ARG ALA LEU VAL PRO SER SEQRES 4 B 442 GLY ALA SER THR GLY GLU HIS GLU ALA VAL GLU LEU ARG SEQRES 5 B 442 ASP GLY ASP LYS SER ARG TYR LEU GLY LYS GLY VAL THR SEQRES 6 B 442 LYS ALA VAL GLU ASN VAL ASN GLU ILE ILE ALA PRO GLU SEQRES 7 B 442 ILE ILE GLU GLY GLU PHE SER VAL LEU ASP GLN VAL SER SEQRES 8 B 442 ILE ASP LYS MET MET ILE ALA LEU ASP GLY THR PRO ASN SEQRES 9 B 442 LYS GLY LYS LEU GLY ALA ASN ALA ILE LEU GLY VAL SER SEQRES 10 B 442 ILE ALA VAL ALA ARG ALA ALA ALA ASP LEU LEU GLY GLN SEQRES 11 B 442 PRO LEU TYR LYS TYR LEU GLY GLY PHE ASN GLY LYS GLN SEQRES 12 B 442 LEU PRO VAL PRO MET MET ASN ILE VAL ASN GLY GLY SER SEQRES 13 B 442 HIS SER ASP ALA PRO ILE ALA PHE GLN GLU PHE MET ILE SEQRES 14 B 442 LEU PRO VAL GLY ALA THR THR PHE LYS GLU SER LEU ARG SEQRES 15 B 442 TRP GLY THR GLU ILE PHE HIS ASN LEU LYS SER ILE LEU SEQRES 16 B 442 SER LYS ARG GLY LEU GLU THR ALA VAL GLY ASP GLU GLY SEQRES 17 B 442 GLY PHE ALA PRO LYS PHE GLU GLY THR GLU ASP ALA VAL SEQRES 18 B 442 GLU THR ILE ILE GLN ALA ILE GLU ALA ALA GLY TYR LYS SEQRES 19 B 442 PRO GLY GLU GLU VAL PHE LEU GLY PHE ASP CYS ALA SER SEQRES 20 B 442 SER GLU PHE TYR GLU ASN GLY VAL TYR ASP TYR SER LYS SEQRES 21 B 442 PHE GLU GLY GLU HIS GLY ALA LYS ARG THR ALA ALA GLU SEQRES 22 B 442 GLN VAL ASP TYR LEU GLU GLN LEU VAL ASP LYS TYR PRO SEQRES 23 B 442 ILE ILE THR ILE GLU ASP GLY MET ASP GLU ASN ASP TRP SEQRES 24 B 442 ASP GLY TRP LYS GLN LEU THR GLU ARG ILE GLY ASP ARG SEQRES 25 B 442 VAL GLN LEU VAL GLY ASP ASP LEU PHE VAL THR ASN THR SEQRES 26 B 442 GLU ILE LEU ALA LYS GLY ILE GLU ASN GLY ILE GLY ASN SEQRES 27 B 442 SER ILE LEU ILE LYS VAL ASN GLN ILE GLY THR LEU THR SEQRES 28 B 442 GLU THR PHE ASP ALA ILE GLU MET ALA GLN LYS ALA GLY SEQRES 29 B 442 TYR THR ALA VAL VAL SER HIS ARG SER GLY GLU THR GLU SEQRES 30 B 442 ASP THR THR ILE ALA ASP ILE ALA VAL ALA THR ASN ALA SEQRES 31 B 442 GLY GLN ILE LYS THR GLY SER LEU SER ARG THR ASP ARG SEQRES 32 B 442 ILE ALA LYS TYR ASN GLN LEU LEU ARG ILE GLU ASP GLU SEQRES 33 B 442 LEU PHE GLU THR ALA LYS TYR ASP GLY ILE LYS SER PHE SEQRES 34 B 442 TYR ASN LEU ASP LYS LEU GLU HIS HIS HIS HIS HIS HIS HET MG A 501 1 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 B 501 5 HET SO4 B 502 5 HET MG B 503 1 HET SO4 B 504 5 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 SO4 6(O4 S 2-) FORMUL 11 HOH *20(H2 O) HELIX 1 AA1 ARG A 58 LYS A 62 5 5 HELIX 2 AA2 VAL A 64 ILE A 74 1 11 HELIX 3 AA3 ILE A 74 GLU A 83 1 10 HELIX 4 AA4 ASP A 88 GLY A 101 1 14 HELIX 5 AA5 GLY A 109 GLY A 129 1 21 HELIX 6 AA6 PRO A 131 GLY A 138 1 8 HELIX 7 AA7 GLY A 155 SER A 158 5 4 HELIX 8 AA8 THR A 176 ARG A 198 1 23 HELIX 9 AA9 GLY A 216 ALA A 231 1 16 HELIX 10 AB1 ALA A 246 GLU A 249 5 4 HELIX 11 AB2 TYR A 258 GLY A 263 1 6 HELIX 12 AB3 THR A 270 TYR A 285 1 16 HELIX 13 AB4 ASP A 298 GLY A 310 1 13 HELIX 14 AB5 ASN A 324 ASN A 334 1 11 HELIX 15 AB6 LYS A 343 GLY A 348 1 6 HELIX 16 AB7 THR A 349 ALA A 363 1 15 HELIX 17 AB8 THR A 379 THR A 388 1 10 HELIX 18 AB9 ARG A 400 PHE A 418 1 19 HELIX 19 AC1 GLU A 419 ALA A 421 5 3 HELIX 20 AC2 ASP A 424 PHE A 429 5 6 HELIX 21 AC3 ARG B 58 LYS B 62 5 5 HELIX 22 AC4 VAL B 64 ILE B 74 1 11 HELIX 23 AC5 ILE B 74 GLU B 83 1 10 HELIX 24 AC6 ASP B 88 GLY B 101 1 14 HELIX 25 AC7 GLY B 109 GLY B 129 1 21 HELIX 26 AC8 PRO B 131 GLY B 138 1 8 HELIX 27 AC9 GLY B 155 SER B 158 5 4 HELIX 28 AD1 THR B 176 ARG B 198 1 23 HELIX 29 AD2 GLY B 216 ALA B 231 1 16 HELIX 30 AD3 ALA B 246 GLU B 249 5 4 HELIX 31 AD4 SER B 259 PHE B 261 5 3 HELIX 32 AD5 THR B 270 TYR B 285 1 16 HELIX 33 AD6 ASP B 298 GLY B 310 1 13 HELIX 34 AD7 ASN B 324 ASN B 334 1 11 HELIX 35 AD8 LYS B 343 GLY B 348 1 6 HELIX 36 AD9 THR B 349 ALA B 363 1 15 HELIX 37 AE1 THR B 379 THR B 388 1 10 HELIX 38 AE2 ARG B 400 PHE B 418 1 19 HELIX 39 AE3 GLU B 419 ALA B 421 5 3 HELIX 40 AE4 GLY B 425 PHE B 429 5 5 SHEET 1 AA1 3 ILE A 4 LEU A 13 0 SHEET 2 AA1 3 PRO A 19 THR A 27 -1 O GLU A 24 N TYR A 8 SHEET 3 AA1 3 PHE A 32 LEU A 36 -1 O ALA A 35 N VAL A 23 SHEET 1 AA2 9 VAL A 146 PRO A 147 0 SHEET 2 AA2 9 GLN A 392 LYS A 394 1 O ILE A 393 N VAL A 146 SHEET 3 AA2 9 THR A 366 SER A 370 1 N VAL A 369 O LYS A 394 SHEET 4 AA2 9 SER A 339 ILE A 342 1 N ILE A 342 O VAL A 368 SHEET 5 AA2 9 GLN A 314 GLY A 317 1 N GLY A 317 O LEU A 341 SHEET 6 AA2 9 ILE A 287 GLU A 291 1 N ILE A 288 O GLN A 314 SHEET 7 AA2 9 PHE A 240 ASP A 244 1 N LEU A 241 O ILE A 288 SHEET 8 AA2 9 GLU A 166 LEU A 170 -1 N LEU A 170 O PHE A 240 SHEET 9 AA2 9 MET A 149 ASN A 153 -1 N VAL A 152 O PHE A 167 SHEET 1 AA3 3 TYR A 251 GLU A 252 0 SHEET 2 AA3 3 VAL A 255 ASP A 257 -1 O VAL A 255 N GLU A 252 SHEET 3 AA3 3 LYS A 268 ARG A 269 -1 O ARG A 269 N TYR A 256 SHEET 1 AA4 3 ILE B 4 LEU B 13 0 SHEET 2 AA4 3 PRO B 19 THR B 27 -1 O GLU B 24 N TYR B 8 SHEET 3 AA4 3 PHE B 32 LEU B 36 -1 O GLY B 33 N VAL B 25 SHEET 1 AA5 2 GLN B 143 LEU B 144 0 SHEET 2 AA5 2 LYS B 422 TYR B 423 1 O LYS B 422 N LEU B 144 SHEET 1 AA6 9 VAL B 146 PRO B 147 0 SHEET 2 AA6 9 GLN B 392 LYS B 394 1 O ILE B 393 N VAL B 146 SHEET 3 AA6 9 THR B 366 SER B 370 1 N VAL B 369 O LYS B 394 SHEET 4 AA6 9 SER B 339 ILE B 342 1 N ILE B 340 O VAL B 368 SHEET 5 AA6 9 GLN B 314 GLY B 317 1 N GLY B 317 O LEU B 341 SHEET 6 AA6 9 ILE B 287 GLU B 291 1 N ILE B 290 O GLN B 314 SHEET 7 AA6 9 PHE B 240 ASP B 244 1 N LEU B 241 O ILE B 288 SHEET 8 AA6 9 GLU B 166 LEU B 170 -1 N MET B 168 O GLY B 242 SHEET 9 AA6 9 MET B 149 ASN B 153 -1 N MET B 149 O ILE B 169 SHEET 1 AA7 3 TYR B 251 GLU B 252 0 SHEET 2 AA7 3 VAL B 255 ASP B 257 -1 O VAL B 255 N GLU B 252 SHEET 3 AA7 3 LYS B 268 ARG B 269 -1 O ARG B 269 N TYR B 256 LINK OD2 ASP A 244 MG MG A 501 1555 1555 1.98 LINK OD2 ASP A 318 MG MG A 501 1555 1555 2.08 LINK OD2 ASP B 244 MG MG B 503 1555 1555 2.30 LINK OE1 GLU B 291 MG MG B 503 1555 1555 1.73 LINK OD2 ASP B 318 MG MG B 503 1555 1555 1.95 SITE 1 AC1 3 ASP A 244 GLU A 291 ASP A 318 SITE 1 AC2 3 LYS A 343 ARG A 372 SER A 373 SITE 1 AC3 4 LYS A 178 GLU A 179 ARG A 182 ARG B 58 SITE 1 AC4 4 ARG A 16 ASN A 18 HIS B 189 LYS B 192 SITE 1 AC5 4 HIS A 189 LYS A 192 ARG B 16 ASN B 18 SITE 1 AC6 3 ARG A 58 GLU B 179 ARG B 182 SITE 1 AC7 3 ASP B 244 GLU B 291 ASP B 318 SITE 1 AC8 3 LYS B 343 ARG B 372 SER B 373 CRYST1 164.686 164.686 77.335 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012931 0.00000