HEADER UNKNOWN FUNCTION 27-MAY-15 5BOI TITLE BACILLUS MEGATERIUM YPEB C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERMINATION PROTEIN YPEB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM QM B1551; SOURCE 3 ORGANISM_TAXID: 545693; SOURCE 4 GENE: YPEB, BMQ_4349; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: TOP10; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBADCLIC KEYWDS PEPSY DOMAIN, INHIBITORY PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.CHRISTIE,D.Y.CHIRGADZE,F.I.USTOK REVDAT 3 08-MAY-24 5BOI 1 REMARK REVDAT 2 16-SEP-15 5BOI 1 JRNL REVDAT 1 12-AUG-15 5BOI 0 JRNL AUTH F.I.USTOK,D.Y.CHIRGADZE,G.CHRISTIE JRNL TITL CRYSTAL STRUCTURE OF THE PEPSY-CONTAINING DOMAIN OF THE YPEB JRNL TITL 2 PROTEIN INVOLVED IN GERMINATION OF BACILLUS SPORES. JRNL REF PROTEINS V. 83 1914 2015 JRNL REFN ESSN 1097-0134 JRNL PMID 26219275 JRNL DOI 10.1002/PROT.24868 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.430 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3506 - 4.3372 1.00 1655 153 0.1907 0.2114 REMARK 3 2 4.3372 - 3.4429 1.00 1590 145 0.1687 0.1802 REMARK 3 3 3.4429 - 3.0078 1.00 1571 146 0.1934 0.2160 REMARK 3 4 3.0078 - 2.7328 1.00 1552 143 0.2090 0.2592 REMARK 3 5 2.7328 - 2.5370 1.00 1541 142 0.2102 0.2673 REMARK 3 6 2.5370 - 2.3874 1.00 1557 143 0.2121 0.2444 REMARK 3 7 2.3874 - 2.2679 1.00 1536 142 0.2000 0.2367 REMARK 3 8 2.2679 - 2.1691 1.00 1546 142 0.1934 0.2671 REMARK 3 9 2.1691 - 2.0856 1.00 1541 141 0.1970 0.2684 REMARK 3 10 2.0856 - 2.0137 1.00 1540 142 0.1880 0.2487 REMARK 3 11 2.0137 - 1.9507 1.00 1510 139 0.2082 0.2490 REMARK 3 12 1.9507 - 1.8949 0.99 1526 140 0.2285 0.2647 REMARK 3 13 1.8949 - 1.8450 1.00 1510 141 0.2524 0.2803 REMARK 3 14 1.8450 - 1.8000 1.00 1528 138 0.2989 0.2982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1871 REMARK 3 ANGLE : 1.109 2522 REMARK 3 CHIRALITY : 0.049 281 REMARK 3 PLANARITY : 0.005 326 REMARK 3 DIHEDRAL : 14.613 716 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.3536 82.3064 38.0588 REMARK 3 T TENSOR REMARK 3 T11: 0.7275 T22: 0.9535 REMARK 3 T33: 0.6804 T12: -0.1223 REMARK 3 T13: 0.0884 T23: -0.2619 REMARK 3 L TENSOR REMARK 3 L11: 0.2370 L22: 0.1048 REMARK 3 L33: 0.1643 L12: 0.0500 REMARK 3 L13: -0.1870 L23: -0.0954 REMARK 3 S TENSOR REMARK 3 S11: 0.4309 S12: -1.3622 S13: 0.4966 REMARK 3 S21: 0.1900 S22: -0.2361 S23: -0.0822 REMARK 3 S31: -0.7903 S32: 0.6678 S33: -0.0198 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.9602 82.9567 29.4023 REMARK 3 T TENSOR REMARK 3 T11: 0.5760 T22: 0.3065 REMARK 3 T33: 0.8597 T12: -0.1136 REMARK 3 T13: -0.0746 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 1.3001 L22: 0.1501 REMARK 3 L33: 2.8620 L12: 0.0435 REMARK 3 L13: 0.1009 L23: -0.1220 REMARK 3 S TENSOR REMARK 3 S11: -0.1648 S12: -0.4810 S13: 1.3108 REMARK 3 S21: 0.5511 S22: -0.1479 S23: -0.4397 REMARK 3 S31: -1.3267 S32: 0.3501 S33: -0.1360 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.2592 75.7118 27.8792 REMARK 3 T TENSOR REMARK 3 T11: 0.4722 T22: 0.6292 REMARK 3 T33: 0.6794 T12: -0.1495 REMARK 3 T13: 0.0051 T23: -0.0828 REMARK 3 L TENSOR REMARK 3 L11: 0.3880 L22: 2.4379 REMARK 3 L33: 1.9930 L12: -0.5056 REMARK 3 L13: 0.7069 L23: -0.4948 REMARK 3 S TENSOR REMARK 3 S11: -0.6597 S12: 0.7167 S13: 0.9498 REMARK 3 S21: -0.0249 S22: 0.1238 S23: -0.3512 REMARK 3 S31: -0.3895 S32: 0.6404 S33: -0.9076 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.3382 68.1776 29.2994 REMARK 3 T TENSOR REMARK 3 T11: 0.2482 T22: 0.2638 REMARK 3 T33: 0.2714 T12: -0.0488 REMARK 3 T13: 0.0426 T23: -0.0834 REMARK 3 L TENSOR REMARK 3 L11: 0.8622 L22: 0.6943 REMARK 3 L33: 1.4447 L12: 0.2503 REMARK 3 L13: 0.3676 L23: 0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: -0.5696 S13: 0.3429 REMARK 3 S21: -0.2878 S22: 0.0669 S23: -0.1854 REMARK 3 S31: -0.2404 S32: 0.1101 S33: -0.0058 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.3720 59.5417 38.2579 REMARK 3 T TENSOR REMARK 3 T11: 0.3009 T22: 0.4424 REMARK 3 T33: 0.2116 T12: -0.0464 REMARK 3 T13: 0.0108 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 0.2557 L22: 0.2710 REMARK 3 L33: 0.6169 L12: -0.3745 REMARK 3 L13: -0.3049 L23: 0.5350 REMARK 3 S TENSOR REMARK 3 S11: -0.4540 S12: -1.0086 S13: -0.5532 REMARK 3 S21: 0.6496 S22: 0.0885 S23: 0.5164 REMARK 3 S31: 0.3674 S32: 0.6463 S33: -0.0176 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 309 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7057 61.9589 32.9482 REMARK 3 T TENSOR REMARK 3 T11: 0.2390 T22: 0.2542 REMARK 3 T33: 0.2478 T12: 0.0036 REMARK 3 T13: 0.0242 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.9126 L22: 0.0509 REMARK 3 L33: 0.7274 L12: -0.1673 REMARK 3 L13: 0.1964 L23: -0.4270 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: -0.0880 S13: 0.0415 REMARK 3 S21: 0.0272 S22: 0.0708 S23: 0.0308 REMARK 3 S31: 0.0096 S32: 0.2016 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9103 58.6335 32.9171 REMARK 3 T TENSOR REMARK 3 T11: 0.2169 T22: 0.1868 REMARK 3 T33: 0.2388 T12: 0.0282 REMARK 3 T13: -0.0046 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.9551 L22: 0.4855 REMARK 3 L33: 1.9842 L12: 0.0019 REMARK 3 L13: -0.7519 L23: 0.2415 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.1016 S13: 0.1657 REMARK 3 S21: 0.0081 S22: -0.0057 S23: 0.1206 REMARK 3 S31: -0.0062 S32: -0.0965 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 441 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9803 53.8628 26.4524 REMARK 3 T TENSOR REMARK 3 T11: 0.2254 T22: 0.2859 REMARK 3 T33: 0.2101 T12: -0.0044 REMARK 3 T13: 0.0114 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.1047 L22: 1.6316 REMARK 3 L33: 2.1773 L12: 1.0715 REMARK 3 L13: -0.0541 L23: -0.0838 REMARK 3 S TENSOR REMARK 3 S11: -0.1101 S12: 0.5070 S13: 0.0425 REMARK 3 S21: -0.0338 S22: 0.0560 S23: -0.1684 REMARK 3 S31: 0.1068 S32: -0.0218 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23741 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN PLATE-TYPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.27 M LITHIUM SULPHATE, 44 % (V/V) REMARK 280 PEG 400, 0.1 M SODIUM ACETATE, PH 4.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.90300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.90300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.60400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.05200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.60400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.05200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.90300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.60400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.05200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.90300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.60400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.05200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 700 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 210 REMARK 465 GLY A 211 REMARK 465 GLY A 212 REMARK 465 GLY A 213 REMARK 465 PHE A 214 REMARK 465 ALA A 215 REMARK 465 SER A 442 REMARK 465 GLU A 443 REMARK 465 PRO A 444 REMARK 465 LEU A 445 REMARK 465 TYR A 446 REMARK 465 ASN A 447 REMARK 465 GLU A 448 REMARK 465 VAL A 449 REMARK 465 GLU A 450 REMARK 465 ASN A 451 REMARK 465 LEU A 452 REMARK 465 TYR A 453 REMARK 465 PHE A 454 REMARK 465 GLN A 455 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 418 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 296 O HOH A 601 1.95 REMARK 500 O HOH A 642 O HOH A 695 2.07 REMARK 500 OD1 ASP A 403 O HOH A 602 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 608 O HOH A 608 3655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 264 41.06 -104.28 REMARK 500 ASP A 352 -0.25 -141.21 REMARK 500 ASN A 419 -19.13 75.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 700 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 DBREF 5BOI A 216 449 UNP D5DRI0 D5DRI0_BACMQ 216 449 SEQADV 5BOI MET A 210 UNP D5DRI0 INITIATING METHIONINE SEQADV 5BOI GLY A 211 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI GLY A 212 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI GLY A 213 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI PHE A 214 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI ALA A 215 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI GLU A 450 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI ASN A 451 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI LEU A 452 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI TYR A 453 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI PHE A 454 UNP D5DRI0 EXPRESSION TAG SEQADV 5BOI GLN A 455 UNP D5DRI0 EXPRESSION TAG SEQRES 1 A 246 MET GLY GLY GLY PHE ALA GLY ARG GLU VAL SER GLU ASP SEQRES 2 A 246 VAL ALA LYS GLN VAL ALA ARG SER PHE LEU ASN LEU LYS SEQRES 3 A 246 GLY ASN GLU GLN ILE HIS ILE VAL LYS SER GLY LYS ASP SEQRES 4 A 246 ALA ASP TYR GLU VAL TYR SER LEU THR ILE THR ASP PRO SEQRES 5 A 246 LYS THR ASN GLN GLU THR TYR MET ASP ILE THR GLN LYS SEQRES 6 A 246 GLY GLY TYR PRO LEU TRP VAL LEU GLU ASP ARG ASP ILE SEQRES 7 A 246 LYS LYS GLN ASN ILE SER LEU ASN ASP ALA MET ASN LYS SEQRES 8 A 246 ALA THR LYS PHE LEU LYS ASP HIS ARG PHE GLU SER LEU SEQRES 9 A 246 VAL MET ALA GLU SER ALA GLN TYR ASP ASN MET GLY VAL SEQRES 10 A 246 PHE THR PHE VAL GLU GLN THR GLU SER GLY VAL ARG ILE SEQRES 11 A 246 TYR PRO ASP SER VAL LYS MET LYS MET SER LEU GLU ASP SEQRES 12 A 246 GLY SER VAL ILE GLY PHE SER ALA LYS ASP PHE LEU LEU SEQRES 13 A 246 LYS HIS ARG THR ARG ASP ILE PRO LYS PRO LYS ILE SER SEQRES 14 A 246 LYS GLU GLN ALA LYS THR LYS LEU ASN SER ASN VAL LYS SEQRES 15 A 246 VAL MET GLU GLU ARG LEU ALA ILE ILE THR ASN ASP LEU SEQRES 16 A 246 ASN GLU GLU VAL LEU CYS TYR GLU PHE LEU GLY THR ILE SEQRES 17 A 246 LYS ASN ASP THR TYR ARG ILE PHE ILE ASN ALA ASP THR SEQRES 18 A 246 GLY PHE GLU GLU LYS VAL GLU LYS LEU GLN ASN SER GLU SEQRES 19 A 246 PRO LEU TYR ASN GLU VAL GLU ASN LEU TYR PHE GLN HET SO4 A 501 5 HET SO4 A 502 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *100(H2 O) HELIX 1 AA1 SER A 220 LEU A 232 1 13 HELIX 2 AA2 SER A 293 HIS A 308 1 16 HELIX 3 AA3 ALA A 360 LYS A 366 1 7 HELIX 4 AA4 SER A 378 LYS A 385 1 8 SHEET 1 AA1 8 GLN A 239 LYS A 244 0 SHEET 2 AA1 8 VAL A 253 THR A 259 -1 O SER A 255 N VAL A 243 SHEET 3 AA1 8 GLU A 266 THR A 272 -1 O MET A 269 N LEU A 256 SHEET 4 AA1 8 PRO A 278 GLU A 283 -1 O LEU A 282 N TYR A 268 SHEET 5 AA1 8 VAL A 355 SER A 359 -1 O ILE A 356 N GLU A 283 SHEET 6 AA1 8 ARG A 338 SER A 349 -1 N LYS A 347 O ILE A 356 SHEET 7 AA1 8 MET A 324 GLN A 332 -1 N GLU A 331 O ILE A 339 SHEET 8 AA1 8 LEU A 313 TYR A 321 -1 N ALA A 316 O THR A 328 SHEET 1 AA210 GLN A 239 LYS A 244 0 SHEET 2 AA210 VAL A 253 THR A 259 -1 O SER A 255 N VAL A 243 SHEET 3 AA210 GLU A 266 THR A 272 -1 O MET A 269 N LEU A 256 SHEET 4 AA210 PRO A 278 GLU A 283 -1 O LEU A 282 N TYR A 268 SHEET 5 AA210 VAL A 355 SER A 359 -1 O ILE A 356 N GLU A 283 SHEET 6 AA210 ARG A 338 SER A 349 -1 N LYS A 347 O ILE A 356 SHEET 7 AA210 LYS A 391 THR A 401 1 O ILE A 399 N ARG A 338 SHEET 8 AA210 GLU A 407 ILE A 417 -1 O GLU A 412 N ARG A 396 SHEET 9 AA210 ASP A 420 ASN A 427 -1 O ILE A 424 N PHE A 413 SHEET 10 AA210 GLU A 433 LEU A 439 -1 O LEU A 439 N THR A 421 SITE 1 AC1 4 THR A 333 GLU A 334 SER A 335 HOH A 604 SITE 1 AC2 4 GLN A 332 ARG A 338 ARG A 396 HOH A 606 CRYST1 53.208 110.104 85.806 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018794 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011654 0.00000