HEADER LYASE 27-MAY-15 5BP3 TITLE DEHYDRATASE DOMAIN (DH) OF A MYCOCEROSIC ACID SYNTHASE-LIKE (MAS-LIKE) TITLE 2 PKS, CRYSTAL FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYCOCEROSIC ACID SYNTHASE-LIKE POLYKETIDE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 884-1186; COMPND 5 SYNONYM: MAS-LIKE PKS,POLYKETIDE SYNTHASE PKS5; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 CELL_LINE: MYBOBACTERIUM; SOURCE 6 ATCC: 700084; SOURCE 7 GENE: PKS5, MSMEG_4727; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS LYASE, PKS, DEHYDRATASE, DH, POLYKETIDE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.HERBST,P.R.JAKOB,F.ZAEHRINGER,T.MAIER REVDAT 6 10-JAN-24 5BP3 1 REMARK REVDAT 5 06-SEP-17 5BP3 1 REMARK REVDAT 4 28-DEC-16 5BP3 1 TITLE REVDAT 3 06-APR-16 5BP3 1 JRNL REVDAT 2 30-MAR-16 5BP3 1 JRNL REVDAT 1 09-MAR-16 5BP3 0 JRNL AUTH D.A.HERBST,R.P.JAKOB,F.ZAHRINGER,T.MAIER JRNL TITL MYCOCEROSIC ACID SYNTHASE EXEMPLIFIES THE ARCHITECTURE OF JRNL TITL 2 REDUCING POLYKETIDE SYNTHASES. JRNL REF NATURE V. 531 533 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 26976449 JRNL DOI 10.1038/NATURE16993 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 114809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.740 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9946 - 3.4944 1.00 8513 151 0.1459 0.1497 REMARK 3 2 3.4944 - 2.7737 1.00 8255 147 0.1383 0.1609 REMARK 3 3 2.7737 - 2.4231 1.00 8171 144 0.1323 0.1549 REMARK 3 4 2.4231 - 2.2015 1.00 8123 144 0.1217 0.1721 REMARK 3 5 2.2015 - 2.0437 1.00 8097 143 0.1233 0.1808 REMARK 3 6 2.0437 - 1.9232 1.00 8073 143 0.1391 0.1840 REMARK 3 7 1.9232 - 1.8269 1.00 8077 144 0.1386 0.1904 REMARK 3 8 1.8269 - 1.7474 1.00 8031 143 0.1606 0.2182 REMARK 3 9 1.7474 - 1.6801 1.00 8037 142 0.1798 0.2281 REMARK 3 10 1.6801 - 1.6221 0.99 8005 142 0.2140 0.2771 REMARK 3 11 1.6221 - 1.5714 0.99 7958 140 0.2346 0.3311 REMARK 3 12 1.5714 - 1.5265 0.99 7940 141 0.2528 0.2785 REMARK 3 13 1.5265 - 1.4863 0.98 7912 141 0.2891 0.3288 REMARK 3 14 1.4863 - 1.4500 0.95 7617 135 0.3397 0.3988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4587 REMARK 3 ANGLE : 1.309 6298 REMARK 3 CHIRALITY : 0.074 731 REMARK 3 PLANARITY : 0.007 842 REMARK 3 DIHEDRAL : 11.384 1646 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 11, 2013 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JULY 4, 2012 REMARK 200 BUILT=20131111 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 47.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BP2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION CONDITION: 16 % (W/V) REMARK 280 PEG 3350 0.25 M DISODIUM MALONATE 0.1 M BIS-TRIS PROPANE PH 6.5 REMARK 280 PROTEIN/BUFFER: 38 MG/ML PROTEIN 0.02 M HEPES PH 7.4 0.25 M NACL REMARK 280 5 % (V/V) GLYCEROL 0.005 M DTT CRYO: 25 % (V/V) ETHYLENE GLYCOL REMARK 280 (FINAL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.53000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.53000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -33.53000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 405.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.49000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 33.53000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 405.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.49000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1355 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1550 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 882 REMARK 465 MET A 883 REMARK 465 LEU A 884 REMARK 465 ASP A 885 REMARK 465 ARG A 886 REMARK 465 GLU A 887 REMARK 465 LEU A 888 REMARK 465 GLU A 889 REMARK 465 SER A 890 REMARK 465 SER A 891 REMARK 465 ALA A 892 REMARK 465 PRO A 893 REMARK 465 GLY A 894 REMARK 465 GLN A 1002 REMARK 465 SER A 1003 REMARK 465 GLY A 1004 REMARK 465 GLU A 1184 REMARK 465 GLU A 1185 REMARK 465 ARG A 1186 REMARK 465 SER B 882 REMARK 465 MET B 883 REMARK 465 LEU B 884 REMARK 465 ASP B 885 REMARK 465 ARG B 886 REMARK 465 GLU B 887 REMARK 465 LEU B 888 REMARK 465 GLU B 889 REMARK 465 SER B 890 REMARK 465 SER B 891 REMARK 465 ALA B 892 REMARK 465 PRO B 893 REMARK 465 GLY B 894 REMARK 465 GLN B 1002 REMARK 465 SER B 1003 REMARK 465 GLY B 1004 REMARK 465 ASP B 1005 REMARK 465 LYS B 1181 REMARK 465 ALA B 1182 REMARK 465 GLU B 1183 REMARK 465 GLU B 1184 REMARK 465 GLU B 1185 REMARK 465 ARG B 1186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1090 CG CD NE CZ NH1 NH2 REMARK 470 ARG B1090 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 1162 O HOH A 1301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1488 O HOH A 1488 2875 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1019 52.26 -97.27 REMARK 500 ALA A1068 -110.04 -104.84 REMARK 500 ASP B 961 -157.46 -159.95 REMARK 500 HIS B 971 -136.54 -102.30 REMARK 500 ALA B1068 -108.00 -104.16 REMARK 500 THR B1176 -128.62 -66.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 1000 HIS A 1001 -147.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1586 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1587 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1588 DISTANCE = 6.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BP4 RELATED DB: PDB REMARK 900 RELATED ID: 5BP5 RELATED DB: PDB REMARK 900 RELATED ID: 5BP2 RELATED DB: PDB DBREF 5BP3 A 884 1186 UNP A0R1E8 PKS5_MYCS2 884 1186 DBREF 5BP3 B 884 1186 UNP A0R1E8 PKS5_MYCS2 884 1186 SEQADV 5BP3 SER A 882 UNP A0R1E8 EXPRESSION TAG SEQADV 5BP3 MET A 883 UNP A0R1E8 EXPRESSION TAG SEQADV 5BP3 SER B 882 UNP A0R1E8 EXPRESSION TAG SEQADV 5BP3 MET B 883 UNP A0R1E8 EXPRESSION TAG SEQRES 1 A 305 SER MET LEU ASP ARG GLU LEU GLU SER SER ALA PRO GLY SEQRES 2 A 305 VAL PRO SER VAL SER VAL HIS PRO LEU LEU GLY SER HIS SEQRES 3 A 305 VAL VAL LEU PRO GLN GLU PRO GLU GLU HIS LEU TRP GLN SEQRES 4 A 305 GLY ASP VAL GLY THR GLU ALA HIS PRO TRP LEU SER ASP SEQRES 5 A 305 HIS ARG VAL HIS GLN VAL ALA VAL LEU PRO GLY ALA ALA SEQRES 6 A 305 TYR CYS GLU MET ALA LEU ALA ALA VAL THR PRO VAL LEU SEQRES 7 A 305 GLY ASP THR GLY GLU VAL HIS ASP LEU LYS PHE HIS ASP SEQRES 8 A 305 MET LEU LEU LEU ASP ASP ALA THR PRO VAL TRP VAL SER SEQRES 9 A 305 ALA ALA VAL THR ALA PRO GLY THR ALA GLU PHE GLY VAL SEQRES 10 A 305 GLU THR HIS GLN SER GLY ASP ARG THR GLN ARG ALA THR SEQRES 11 A 305 ALA VAL LEU ARG GLY ASP VAL ASP ALA GLU ARG PRO ALA SEQRES 12 A 305 ALA HIS SER ILE ASP ALA LEU LEU ALA ALA HIS PRO ASN SEQRES 13 A 305 ARG VAL ASP GLY ASP GLU LEU ARG ALA GLY PHE GLY THR SEQRES 14 A 305 VAL GLY ILE GLY HIS GLY ALA ALA PHE ALA GLY LEU SER SEQRES 15 A 305 GLU ALA TYR VAL ALA THR ALA ALA GLU PRO THR VAL VAL SEQRES 16 A 305 ALA ALA VAL ALA LEU PRO GLY PRO LEU ARG SER GLY GLN SEQRES 17 A 305 ARG GLY TYR THR VAL HIS PRO ALA LEU LEU ASP ALA CYS SEQRES 18 A 305 PHE GLN SER VAL ILE ALA HIS PRO GLU VAL GLN ASN ILE SEQRES 19 A 305 ALA SER GLY MET LEU LEU PRO LEU GLY VAL ARG ARG LEU SEQRES 20 A 305 ARG ALA TYR GLY SER THR ARG ASN VAL ARG TYR CYS LEU SEQRES 21 A 305 SER ARG ILE VAL LYS ALA ASP SER PHE GLY VAL GLU ALA SEQRES 22 A 305 ASP LEU GLU LEU LEU ASP ALA ASP GLY THR VAL LEU LEU SEQRES 23 A 305 SER ALA MET GLY LEU GLN LEU GLY THR GLY ASN SER ASP SEQRES 24 A 305 LYS ALA GLU GLU GLU ARG SEQRES 1 B 305 SER MET LEU ASP ARG GLU LEU GLU SER SER ALA PRO GLY SEQRES 2 B 305 VAL PRO SER VAL SER VAL HIS PRO LEU LEU GLY SER HIS SEQRES 3 B 305 VAL VAL LEU PRO GLN GLU PRO GLU GLU HIS LEU TRP GLN SEQRES 4 B 305 GLY ASP VAL GLY THR GLU ALA HIS PRO TRP LEU SER ASP SEQRES 5 B 305 HIS ARG VAL HIS GLN VAL ALA VAL LEU PRO GLY ALA ALA SEQRES 6 B 305 TYR CYS GLU MET ALA LEU ALA ALA VAL THR PRO VAL LEU SEQRES 7 B 305 GLY ASP THR GLY GLU VAL HIS ASP LEU LYS PHE HIS ASP SEQRES 8 B 305 MET LEU LEU LEU ASP ASP ALA THR PRO VAL TRP VAL SER SEQRES 9 B 305 ALA ALA VAL THR ALA PRO GLY THR ALA GLU PHE GLY VAL SEQRES 10 B 305 GLU THR HIS GLN SER GLY ASP ARG THR GLN ARG ALA THR SEQRES 11 B 305 ALA VAL LEU ARG GLY ASP VAL ASP ALA GLU ARG PRO ALA SEQRES 12 B 305 ALA HIS SER ILE ASP ALA LEU LEU ALA ALA HIS PRO ASN SEQRES 13 B 305 ARG VAL ASP GLY ASP GLU LEU ARG ALA GLY PHE GLY THR SEQRES 14 B 305 VAL GLY ILE GLY HIS GLY ALA ALA PHE ALA GLY LEU SER SEQRES 15 B 305 GLU ALA TYR VAL ALA THR ALA ALA GLU PRO THR VAL VAL SEQRES 16 B 305 ALA ALA VAL ALA LEU PRO GLY PRO LEU ARG SER GLY GLN SEQRES 17 B 305 ARG GLY TYR THR VAL HIS PRO ALA LEU LEU ASP ALA CYS SEQRES 18 B 305 PHE GLN SER VAL ILE ALA HIS PRO GLU VAL GLN ASN ILE SEQRES 19 B 305 ALA SER GLY MET LEU LEU PRO LEU GLY VAL ARG ARG LEU SEQRES 20 B 305 ARG ALA TYR GLY SER THR ARG ASN VAL ARG TYR CYS LEU SEQRES 21 B 305 SER ARG ILE VAL LYS ALA ASP SER PHE GLY VAL GLU ALA SEQRES 22 B 305 ASP LEU GLU LEU LEU ASP ALA ASP GLY THR VAL LEU LEU SEQRES 23 B 305 SER ALA MET GLY LEU GLN LEU GLY THR GLY ASN SER ASP SEQRES 24 B 305 LYS ALA GLU GLU GLU ARG HET EDO A1201 10 HET EDO A1202 10 HET EDO A1203 10 HET EDO B1201 10 HET EDO B1202 10 HET EDO B1203 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 9 HOH *497(H2 O) HELIX 1 AA1 HIS A 928 SER A 932 5 5 HELIX 2 AA2 PRO A 943 GLY A 960 1 18 HELIX 3 AA3 SER A 1027 ALA A 1034 1 8 HELIX 4 AA4 GLY A 1041 VAL A 1051 1 11 HELIX 5 AA5 ALA A 1057 ALA A 1060 5 4 HELIX 6 AA6 PRO A 1082 ARG A 1090 5 9 HELIX 7 AA7 HIS A 1095 ILE A 1107 1 13 HELIX 8 AA8 HIS A 1109 ALA A 1116 1 8 HELIX 9 AA9 HIS B 928 SER B 932 5 5 HELIX 10 AB1 PRO B 943 GLY B 960 1 18 HELIX 11 AB2 SER B 1027 HIS B 1035 1 9 HELIX 12 AB3 GLY B 1041 VAL B 1051 1 11 HELIX 13 AB4 ALA B 1057 ALA B 1060 5 4 HELIX 14 AB5 PRO B 1082 ARG B 1086 5 5 HELIX 15 AB6 HIS B 1095 ILE B 1107 1 13 HELIX 16 AB7 HIS B 1109 ALA B 1116 1 8 SHEET 1 AA113 SER A 906 VAL A 909 0 SHEET 2 AA113 GLU A 916 ASP A 922 -1 O LEU A 918 N VAL A 908 SHEET 3 AA113 PRO A 981 ALA A 990 -1 O ALA A 986 N HIS A 917 SHEET 4 AA113 THR A 993 THR A1000 -1 O GLU A 999 N TRP A 983 SHEET 5 AA113 THR A1007 ARG A1015 -1 O ARG A1009 N VAL A 998 SHEET 6 AA113 GLU A 964 LYS A 969 -1 N HIS A 966 O VAL A1013 SHEET 7 AA113 LEU A1121 ALA A1130 -1 O LEU A1128 N VAL A 965 SHEET 8 AA113 VAL A1165 GLY A1175 -1 O GLY A1175 N LEU A1121 SHEET 9 AA113 GLY A1151 ASP A1160 -1 N LEU A1158 O LEU A1166 SHEET 10 AA113 VAL A1137 ASP A1148 -1 N TYR A1139 O LEU A1159 SHEET 11 AA113 THR A1074 VAL A1079 -1 N VAL A1075 O SER A1142 SHEET 12 AA113 LEU A1062 VAL A1067 -1 N GLU A1064 O ALA A1078 SHEET 13 AA113 ASN A1037 ASP A1040 -1 N VAL A1039 O ALA A1065 SHEET 1 AA2 3 VAL A 939 ALA A 940 0 SHEET 2 AA2 3 HIS A 934 VAL A 936 -1 N VAL A 936 O VAL A 939 SHEET 3 AA2 3 ILE A1053 HIS A1055 -1 O GLY A1054 N ARG A 935 SHEET 1 AA313 SER B 906 VAL B 909 0 SHEET 2 AA313 GLU B 916 ASP B 922 -1 O LEU B 918 N VAL B 908 SHEET 3 AA313 PRO B 981 ALA B 990 -1 O VAL B 982 N GLY B 921 SHEET 4 AA313 THR B 993 THR B1000 -1 O GLU B 999 N TRP B 983 SHEET 5 AA313 THR B1007 ARG B1015 -1 O ARG B1009 N VAL B 998 SHEET 6 AA313 GLU B 964 PHE B 970 -1 N HIS B 966 O VAL B1013 SHEET 7 AA313 LEU B1121 ALA B1130 -1 O LEU B1128 N VAL B 965 SHEET 8 AA313 VAL B1165 GLY B1175 -1 O GLN B1173 N LEU B1123 SHEET 9 AA313 GLY B1151 LEU B1159 -1 N VAL B1152 O LEU B1174 SHEET 10 AA313 TYR B1139 ASP B1148 -1 N TYR B1139 O LEU B1159 SHEET 11 AA313 THR B1074 VAL B1079 -1 N ALA B1077 O CYS B1140 SHEET 12 AA313 LEU B1062 VAL B1067 -1 N GLU B1064 O ALA B1078 SHEET 13 AA313 ASN B1037 ASP B1040 -1 N VAL B1039 O ALA B1065 SHEET 1 AA4 3 VAL B 939 ALA B 940 0 SHEET 2 AA4 3 HIS B 934 VAL B 936 -1 N VAL B 936 O VAL B 939 SHEET 3 AA4 3 ILE B1053 HIS B1055 -1 O GLY B1054 N ARG B 935 CISPEP 1 GLU A 913 PRO A 914 0 -3.05 CISPEP 2 GLU B 913 PRO B 914 0 -1.64 SITE 1 AC1 3 HIS A 966 ASP A 967 ARG A1126 SITE 1 AC2 6 HIS A 934 LEU A 942 PRO A 943 GLY A 944 SITE 2 AC2 6 PRO A1122 HOH A1336 SITE 1 AC3 5 LYS A 969 HIS A 971 ARG A1009 THR A1011 SITE 2 AC3 5 HOH A1320 SITE 1 AC4 4 LEU B1141 ARG B1143 ASP B1155 MET B1170 SITE 1 AC5 6 HIS B 934 LEU B 942 PRO B 943 GLY B 944 SITE 2 AC5 6 PRO B1122 HOH B1340 CRYST1 67.060 162.200 59.490 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016810 0.00000