HEADER ISOMERASE 27-MAY-15 5BP8 TITLE ENT-COPALYL DIPHOSPHATE SYNTHASE FROM STREPTOMYCES PLATENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENT-COPALYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES PLATENSIS; SOURCE 3 ORGANISM_TAXID: 58346; SOURCE 4 GENE: PTMT2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS ENT-COPALYL DIPHOSPHATE SYNTHASE, ISOMERASE, PTMT2, STRUCTURAL KEYWDS 2 GENOMICS, APC109899, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 ENZYME DISCOVERY FOR NATURAL PRODUCT BIOSYNTHESIS, NATPRO, PSI- KEYWDS 4 BIOLOGY EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,C.HATZOS-SKINTGES,M.ENDRES,G.BABNIGG,J.D.RUDOLF,M.MA,C.- AUTHOR 2 Y.CHANG,B.SHEN,A.JOACHIMIAK,ENZYME DISCOVERY FOR NATURAL PRODUCT AUTHOR 3 BIOSYNTHESIS (NATPRO),MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 25-DEC-19 5BP8 1 REMARK REVDAT 4 27-SEP-17 5BP8 1 REMARK REVDAT 3 14-SEP-16 5BP8 1 JRNL REVDAT 2 07-SEP-16 5BP8 1 JRNL REVDAT 1 10-JUN-15 5BP8 0 JRNL AUTH J.D.RUDOLF,L.B.DONG,H.CAO,C.HATZOS-SKINTGES,J.OSIPIUK, JRNL AUTH 2 M.ENDRES,C.Y.CHANG,M.MA,G.BABNIGG,A.JOACHIMIAK,G.N.PHILLIPS, JRNL AUTH 3 B.SHEN JRNL TITL STRUCTURE OF THE ENT-COPALYL DIPHOSPHATE SYNTHASE PTMT2 FROM JRNL TITL 2 STREPTOMYCES PLATENSIS CB00739, A BACTERIAL TYPE II JRNL TITL 3 DITERPENE SYNTHASE. JRNL REF J.AM.CHEM.SOC. V. 138 10905 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27490479 JRNL DOI 10.1021/JACS.6B04317 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 56537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2990 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 219 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 1.91000 REMARK 3 B12 (A**2) : -0.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3969 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3655 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5454 ; 1.420 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8409 ; 0.822 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 5.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;33.700 ;22.822 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;11.793 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4595 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 883 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2073 ; 1.324 ; 2.001 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2072 ; 1.322 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2593 ; 2.053 ; 2.992 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 711 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4477 -27.6468 -34.1819 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: 0.0425 REMARK 3 T33: 0.0050 T12: 0.0009 REMARK 3 T13: 0.0112 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.1043 L22: 0.6644 REMARK 3 L33: 0.2327 L12: 0.1532 REMARK 3 L13: -0.1285 L23: -0.0733 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: -0.0342 S13: -0.0167 REMARK 3 S21: -0.1128 S22: 0.0090 S23: -0.0179 REMARK 3 S31: 0.0091 S32: 0.0285 S33: 0.0240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5BP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PROPANE BUFFER, 5 MM MAGNESIUM CHLORIDE, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 66.43500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.35627 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 63.58267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 66.43500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.35627 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 63.58267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 66.43500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.35627 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 63.58267 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 66.43500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.35627 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 63.58267 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 66.43500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.35627 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 63.58267 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 66.43500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.35627 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 63.58267 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.71253 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 127.16533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 76.71253 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 127.16533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 76.71253 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 127.16533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 76.71253 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 127.16533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 76.71253 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 127.16533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 76.71253 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 127.16533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -66.43500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 -38.35627 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -63.58267 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1274 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 526 REMARK 465 SER A 527 REMARK 465 ALA A 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1187 O HOH A 1223 1.82 REMARK 500 O HOH A 965 O HOH A 1079 2.11 REMARK 500 O HOH A 816 O HOH A 1211 2.11 REMARK 500 O HOH A 937 O HOH A 1258 2.13 REMARK 500 O HOH A 998 O HOH A 1268 2.17 REMARK 500 O HOH A 1183 O HOH A 1296 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1026 O HOH A 1222 3555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 93 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 383 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 MSE A 384 CB - CG - SE ANGL. DEV. = -20.2 DEGREES REMARK 500 MSE A 384 CG - SE - CE ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 331 43.19 -83.76 REMARK 500 ASP A 502 -118.01 -142.48 REMARK 500 ASP A 504 -129.69 -105.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1329 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1330 DISTANCE = 6.08 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 706 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC109899 RELATED DB: TARGETTRACK DBREF1 5BP8 A 9 528 UNP A0A023VSF1_STRPT DBREF2 5BP8 A A0A023VSF1 9 528 SEQADV 5BP8 SER A 6 UNP A0A023VSF EXPRESSION TAG SEQADV 5BP8 ASN A 7 UNP A0A023VSF EXPRESSION TAG SEQADV 5BP8 ALA A 8 UNP A0A023VSF EXPRESSION TAG SEQRES 1 A 523 SER ASN ALA THR PRO ALA PRO ARG GLU ALA GLU ALA ALA SEQRES 2 A 523 ALA LEU LEU ALA ALA THR VAL ALA ASP PRO TRP GLY LEU SEQRES 3 A 523 VAL ALA PRO SER VAL TYR ASP THR ALA ARG LEU VAL SER SEQRES 4 A 523 LEU ALA PRO TRP LEU ASP GLY HIS ARG GLU ARG LEU GLY SEQRES 5 A 523 TYR LEU ALA LYS GLU GLN ASN GLN ASP GLY SER TRP GLY SEQRES 6 A 523 ALA PRO ASP GLY TYR GLY LEU VAL PRO THR LEU SER ALA SEQRES 7 A 523 VAL GLU ALA LEU LEU THR GLU LEU ALA ARG THR ASP SER SEQRES 8 A 523 GLY ALA PRO HIS LEU SER PRO ASP ASP LEU ALA ALA ALA SEQRES 9 A 523 CYS ALA ASP GLY LEU GLY ALA LEU ARG ASP GLY LEU LEU SEQRES 10 A 523 ALA GLY PRO VAL PRO ASP THR ILE GLY VAL GLU PHE VAL SEQRES 11 A 523 ALA PRO SER LEU LEU ALA ASP ILE ASN THR ARG LEU ALA SEQRES 12 A 523 ALA LEU THR GLU GLN ALA PRO GLY LYS LEU GLY ALA TRP SEQRES 13 A 523 SER GLY THR THR LEU THR SER PRO ALA PRO ASP LEU ASP SEQRES 14 A 523 GLY ALA LEU LEU ALA GLY VAL ARG GLU MSE THR GLU GLN SEQRES 15 A 523 ALA PRO LEU PRO GLU LYS LEU TRP HIS THR LEU GLU ALA SEQRES 16 A 523 VAL THR ARG ASP GLY THR ARG GLY ALA ARG PRO HIS GLU SEQRES 17 A 523 GLY ALA PRO PRO HIS ASN GLY SER VAL GLY CYS SER PRO SEQRES 18 A 523 ALA ALA THR ALA ALA TRP LEU GLY ALA ALA PRO ASP PRO SEQRES 19 A 523 ALA ALA PRO GLY VAL ALA TYR LEU ARG ASP VAL GLN ALA SEQRES 20 A 523 ARG PHE GLY GLY PRO VAL PRO SER ILE THR PRO ILE VAL SEQRES 21 A 523 TYR PHE GLU GLN ALA TRP VAL LEU ASN SER LEU ALA ALA SEQRES 22 A 523 SER GLY LEU ARG TYR GLU ALA PRO ALA ALA LEU LEU ASP SEQRES 23 A 523 SER LEU GLU ALA GLY LEU THR ASP GLU GLY ILE ALA ALA SEQRES 24 A 523 ALA PRO GLY LEU PRO SER ASP SER ASP ASP THR ALA ALA SEQRES 25 A 523 VAL LEU PHE ALA LEU ALA GLN HIS GLY ARG THR HIS ARG SEQRES 26 A 523 PRO ASP SER LEU MSE HIS PHE ARG ARG ASP GLY TYR PHE SEQRES 27 A 523 SER CYS PHE GLY VAL GLU ARG THR PRO SER THR SER THR SEQRES 28 A 523 ASN ALA HIS ILE LEU GLU ALA LEU GLY HIS HIS VAL THR SEQRES 29 A 523 VAL ARG PRO ASP ASP ALA GLY ARG TYR GLY ALA GLU ILE SEQRES 30 A 523 ARG MSE ILE SER ASP TRP LEU LEU ASP ASN GLN LEU PRO SEQRES 31 A 523 ASP GLY SER TRP MSE ASP LYS TRP HIS ALA SER PRO TYR SEQRES 32 A 523 TYR ALA THR ALA CYS CYS ALA LEU ALA LEU ALA GLU PHE SEQRES 33 A 523 GLY GLY PRO SER ALA ARG ALA ALA VAL ASP ARG ALA ALA SEQRES 34 A 523 ALA TRP ALA LEU ALA THR GLN ARG ALA ASP GLY SER TRP SEQRES 35 A 523 GLY ARG TRP GLN GLY THR THR GLU GLU THR ALA TYR MSE SEQRES 36 A 523 VAL GLN LEU LEU MSE ARG THR ARG THR PRO GLY SER PRO SEQRES 37 A 523 GLY THR VAL ALA ARG SER ALA ALA ARG GLY CYS ASP ALA SEQRES 38 A 523 LEU LEU ALA HIS ASP ASP PRO ALA SER TYR PRO GLY LEU SEQRES 39 A 523 TRP HIS ASP LYS ASP ILE TYR ALA PRO VAL THR VAL ILE SEQRES 40 A 523 ARG ALA ALA ARG LEU ALA ALA LEU ALA LEU GLY GLY ALA SEQRES 41 A 523 ALA SER ALA MODRES 5BP8 MSE A 184 MET MODIFIED RESIDUE MODRES 5BP8 MSE A 335 MET MODIFIED RESIDUE MODRES 5BP8 MSE A 384 MET MODIFIED RESIDUE MODRES 5BP8 MSE A 400 MET MODIFIED RESIDUE MODRES 5BP8 MSE A 460 MET MODIFIED RESIDUE MODRES 5BP8 MSE A 465 MET MODIFIED RESIDUE HET MSE A 184 8 HET MSE A 335 8 HET MSE A 384 8 HET MSE A 400 8 HET MSE A 460 8 HET MSE A 465 8 HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET EDO A 706 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *530(H2 O) HELIX 1 AA1 ALA A 11 ALA A 26 1 16 HELIX 2 AA2 SER A 35 ALA A 46 1 12 HELIX 3 AA3 GLY A 51 GLN A 63 1 13 HELIX 4 AA4 GLY A 76 ALA A 92 1 17 HELIX 5 AA5 SER A 102 GLY A 120 1 19 HELIX 6 AA6 GLY A 131 LEU A 150 1 20 HELIX 7 AA7 PRO A 155 SER A 162 5 8 HELIX 8 AA8 ALA A 170 ASP A 174 5 5 HELIX 9 AA9 GLY A 175 THR A 185 1 11 HELIX 10 AB1 PRO A 191 HIS A 196 5 6 HELIX 11 AB2 THR A 197 THR A 202 1 6 HELIX 12 AB3 SER A 225 GLY A 234 1 10 HELIX 13 AB4 ALA A 241 PHE A 254 1 14 HELIX 14 AB5 ILE A 264 GLY A 280 1 17 HELIX 15 AB6 PRO A 286 LEU A 297 1 12 HELIX 16 AB7 ASP A 311 HIS A 325 1 15 HELIX 17 AB8 PRO A 331 ARG A 338 5 8 HELIX 18 AB9 SER A 353 ARG A 371 1 19 HELIX 19 AC1 ASP A 374 ASN A 392 1 19 HELIX 20 AC2 SER A 406 GLY A 422 1 17 HELIX 21 AC3 GLY A 423 SER A 425 5 3 HELIX 22 AC4 ALA A 426 GLN A 441 1 16 HELIX 23 AC5 THR A 453 THR A 467 1 15 HELIX 24 AC6 PRO A 473 HIS A 490 1 18 HELIX 25 AC7 ASP A 492 TYR A 496 5 5 HELIX 26 AC8 PRO A 508 GLY A 524 1 17 SHEET 1 AA1 2 TRP A 500 HIS A 501 0 SHEET 2 AA1 2 ILE A 505 TYR A 506 -1 O TYR A 506 N TRP A 500 LINK C GLU A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N THR A 185 1555 1555 1.33 LINK C LEU A 334 N MSE A 335 1555 1555 1.34 LINK C MSE A 335 N HIS A 336 1555 1555 1.34 LINK C ARG A 383 N MSE A 384 1555 1555 1.32 LINK C MSE A 384 N ILE A 385 1555 1555 1.33 LINK C TRP A 399 N MSE A 400 1555 1555 1.32 LINK C MSE A 400 N ASP A 401 1555 1555 1.34 LINK C TYR A 459 N MSE A 460 1555 1555 1.33 LINK C MSE A 460 N VAL A 461 1555 1555 1.32 LINK C LEU A 464 N MSE A 465 1555 1555 1.33 LINK C MSE A 465 N ARG A 466 1555 1555 1.33 CISPEP 1 PRO A 216 PRO A 217 0 12.56 CISPEP 2 THR A 262 PRO A 263 0 -3.47 SITE 1 AC1 9 GLN A 187 GLU A 349 ARG A 350 THR A 351 SITE 2 AC1 9 LYS A 402 HOH A 806 HOH A 832 HOH A1014 SITE 3 AC1 9 HOH A1029 SITE 1 AC2 3 ARG A 13 LEU A 488 ARG A 516 SITE 1 AC3 4 THR A 475 ARG A 478 ARG A 482 HOH A 938 SITE 1 AC4 7 LEU A 49 ASP A 50 GLY A 51 HIS A 52 SITE 2 AC4 7 ARG A 53 GLU A 54 HOH A 844 SITE 1 AC5 6 ARG A 442 ALA A 443 ASP A 444 HOH A 809 SITE 2 AC5 6 HOH A1119 HOH A1120 SITE 1 AC6 6 ASN A 64 GLN A 65 ASP A 66 HOH A 833 SITE 2 AC6 6 HOH A 841 HOH A1117 CRYST1 132.870 132.870 190.748 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007526 0.004345 0.000000 0.00000 SCALE2 0.000000 0.008690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005243 0.00000