HEADER SIGNALING PROTEIN 27-MAY-15 5BPB TITLE CRYSTAL STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF HUMAN FRIZZLED 4 - TITLE 2 CRYSTAL FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIZZLED-4; COMPND 3 CHAIN: A, B, D, C; COMPND 4 FRAGMENT: UNP RESIDUES 42-179; COMPND 5 SYNONYM: HFZ4,FZE4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FZD4; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHLSEC-MVENUS-12H KEYWDS WNT SIGNALLING PATHWAY, GLYCOPROTEIN, G PROTEIN COUPLED RECEPTOR, KEYWDS 2 RECEPTOR FOR NORRIN RECOGNITION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.-H.CHANG,F.-L.HSIEH,K.HARLOS,E.Y.JONES REVDAT 6 10-JAN-24 5BPB 1 HETSYN REVDAT 5 29-JUL-20 5BPB 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 13-SEP-17 5BPB 1 ATOM REVDAT 3 29-JUL-15 5BPB 1 JRNL REVDAT 2 22-JUL-15 5BPB 1 JRNL REVDAT 1 01-JUL-15 5BPB 0 JRNL AUTH T.H.CHANG,F.L.HSIEH,M.ZEBISCH,K.HARLOS,J.ELEGHEERT,E.Y.JONES JRNL TITL STRUCTURE AND FUNCTIONAL PROPERTIES OF NORRIN MIMIC WNT FOR JRNL TITL 2 SIGNALLING WITH FRIZZLED4, LRP5/6, AND PROTEOGLYCAN. JRNL REF ELIFE V. 4 06554 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26158506 JRNL DOI 10.7554/ELIFE.06554 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 42000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2227 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.353 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4067 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3808 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5527 ; 1.279 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8772 ; 0.788 ; 3.009 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 6.368 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;34.718 ;24.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 683 ;17.597 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;11.673 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 602 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4510 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 873 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1975 ; 2.125 ; 2.176 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1974 ; 2.092 ; 2.176 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2460 ; 2.903 ; 3.259 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7875 ; 1.523 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 47 ;41.950 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7852 ;10.712 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0730 37.3610 12.2190 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.1714 REMARK 3 T33: 0.0353 T12: -0.0078 REMARK 3 T13: -0.0119 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 5.4582 L22: 3.2105 REMARK 3 L33: 4.5574 L12: -1.5197 REMARK 3 L13: -1.0482 L23: 1.7819 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: -0.7921 S13: 0.3899 REMARK 3 S21: 0.3695 S22: 0.0339 S23: -0.0425 REMARK 3 S31: -0.0782 S32: 0.0813 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7030 38.7520 -12.7410 REMARK 3 T TENSOR REMARK 3 T11: 0.0808 T22: 0.1437 REMARK 3 T33: 0.0345 T12: 0.0007 REMARK 3 T13: -0.0257 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 3.8811 L22: 2.9501 REMARK 3 L33: 3.4910 L12: 0.9742 REMARK 3 L13: -0.8364 L23: -1.4012 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: 0.6006 S13: 0.3313 REMARK 3 S21: -0.2863 S22: 0.0288 S23: 0.0995 REMARK 3 S31: -0.2151 S32: -0.0373 S33: 0.0433 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 43 D 172 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6410 11.6010 -17.1210 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.1080 REMARK 3 T33: 0.0749 T12: -0.0330 REMARK 3 T13: 0.0355 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 2.8959 L22: 3.6816 REMARK 3 L33: 6.8228 L12: -0.3211 REMARK 3 L13: 1.5485 L23: 1.5646 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: 0.2023 S13: -0.2043 REMARK 3 S21: -0.2036 S22: -0.1246 S23: 0.0757 REMARK 3 S31: 0.3483 S32: -0.0896 S33: 0.0539 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 44 C 161 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4040 12.4540 17.9410 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.1751 REMARK 3 T33: 0.1476 T12: 0.0519 REMARK 3 T13: 0.0317 T23: 0.1067 REMARK 3 L TENSOR REMARK 3 L11: 5.0134 L22: 4.4972 REMARK 3 L33: 12.5877 L12: -1.5540 REMARK 3 L13: 4.3243 L23: -4.7784 REMARK 3 S TENSOR REMARK 3 S11: 0.1945 S12: -0.3633 S13: -0.4851 REMARK 3 S21: 0.2433 S22: -0.2033 S23: -0.1089 REMARK 3 S31: 0.9601 S32: 0.2339 S33: 0.0087 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44268 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 41.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.91100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1IJY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M TRI-SODIUM CITRATE, PH 6.5, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.30400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.25400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.25400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.30400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 39 REMARK 465 THR A 40 REMARK 465 GLY A 41 REMARK 465 GLU A 42 REMARK 465 ARG A 43 REMARK 465 GLY A 163 REMARK 465 ASP A 164 REMARK 465 GLU A 165 REMARK 465 GLU A 166 REMARK 465 VAL A 167 REMARK 465 PRO A 168 REMARK 465 LEU A 169 REMARK 465 PRO A 170 REMARK 465 HIS A 171 REMARK 465 LYS A 172 REMARK 465 THR A 173 REMARK 465 PRO A 174 REMARK 465 ILE A 175 REMARK 465 GLN A 176 REMARK 465 PRO A 177 REMARK 465 GLY A 178 REMARK 465 GLU A 179 REMARK 465 GLY A 180 REMARK 465 THR A 181 REMARK 465 LEU A 182 REMARK 465 GLU A 183 REMARK 465 VAL A 184 REMARK 465 LEU A 185 REMARK 465 PHE A 186 REMARK 465 GLN A 187 REMARK 465 ASP B 39 REMARK 465 THR B 40 REMARK 465 GLY B 41 REMARK 465 GLU B 42 REMARK 465 ARG B 43 REMARK 465 GLU B 166 REMARK 465 VAL B 167 REMARK 465 PRO B 168 REMARK 465 LEU B 169 REMARK 465 PRO B 170 REMARK 465 HIS B 171 REMARK 465 LYS B 172 REMARK 465 THR B 173 REMARK 465 PRO B 174 REMARK 465 ILE B 175 REMARK 465 GLN B 176 REMARK 465 PRO B 177 REMARK 465 GLY B 178 REMARK 465 GLU B 179 REMARK 465 GLY B 180 REMARK 465 THR B 181 REMARK 465 GLN B 187 REMARK 465 ASP D 39 REMARK 465 THR D 40 REMARK 465 GLY D 41 REMARK 465 GLU D 42 REMARK 465 THR D 173 REMARK 465 PRO D 174 REMARK 465 ILE D 175 REMARK 465 GLN D 176 REMARK 465 PRO D 177 REMARK 465 GLY D 178 REMARK 465 GLU D 179 REMARK 465 GLY D 180 REMARK 465 THR D 181 REMARK 465 LEU D 182 REMARK 465 GLU D 183 REMARK 465 VAL D 184 REMARK 465 LEU D 185 REMARK 465 PHE D 186 REMARK 465 GLN D 187 REMARK 465 ASP C 39 REMARK 465 THR C 40 REMARK 465 GLY C 41 REMARK 465 GLU C 42 REMARK 465 ARG C 43 REMARK 465 PRO C 162 REMARK 465 GLY C 163 REMARK 465 ASP C 164 REMARK 465 GLU C 165 REMARK 465 GLU C 166 REMARK 465 VAL C 167 REMARK 465 PRO C 168 REMARK 465 LEU C 169 REMARK 465 PRO C 170 REMARK 465 HIS C 171 REMARK 465 LYS C 172 REMARK 465 THR C 173 REMARK 465 PRO C 174 REMARK 465 ILE C 175 REMARK 465 GLN C 176 REMARK 465 PRO C 177 REMARK 465 GLY C 178 REMARK 465 GLU C 179 REMARK 465 GLY C 180 REMARK 465 THR C 181 REMARK 465 LEU C 182 REMARK 465 GLU C 183 REMARK 465 VAL C 184 REMARK 465 LEU C 185 REMARK 465 PHE C 186 REMARK 465 GLN C 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER D 92 N GLU D 165 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 162 C - N - CD ANGL. DEV. = -21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 59 21.03 -143.91 REMARK 500 PRO D 162 -125.86 -99.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP D 164 GLU D 165 -145.06 REMARK 500 GLU D 166 VAL D 167 -137.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 5BPB A 42 179 UNP Q9ULV1 FZD4_HUMAN 42 179 DBREF 5BPB B 42 179 UNP Q9ULV1 FZD4_HUMAN 42 179 DBREF 5BPB D 42 179 UNP Q9ULV1 FZD4_HUMAN 42 179 DBREF 5BPB C 42 179 UNP Q9ULV1 FZD4_HUMAN 42 179 SEQADV 5BPB ASP A 39 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB THR A 40 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLY A 41 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLY A 180 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB THR A 181 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB LEU A 182 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLU A 183 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB VAL A 184 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB LEU A 185 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB PHE A 186 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLN A 187 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB ASP B 39 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB THR B 40 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLY B 41 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLY B 180 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB THR B 181 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB LEU B 182 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLU B 183 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB VAL B 184 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB LEU B 185 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB PHE B 186 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLN B 187 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB ASP D 39 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB THR D 40 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLY D 41 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLY D 180 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB THR D 181 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB LEU D 182 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLU D 183 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB VAL D 184 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB LEU D 185 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB PHE D 186 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLN D 187 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB ASP C 39 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB THR C 40 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLY C 41 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLY C 180 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB THR C 181 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB LEU C 182 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLU C 183 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB VAL C 184 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB LEU C 185 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB PHE C 186 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPB GLN C 187 UNP Q9ULV1 EXPRESSION TAG SEQRES 1 A 149 ASP THR GLY GLU ARG ARG CYS ASP PRO ILE ARG ILE SER SEQRES 2 A 149 MET CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO SEQRES 3 A 149 ASN LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU SEQRES 4 A 149 GLN LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SEQRES 5 A 149 SER SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL SEQRES 6 A 149 PRO MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO SEQRES 7 A 149 CYS GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU SEQRES 8 A 149 PRO VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER SEQRES 9 A 149 LEU ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN SEQRES 10 A 149 HIS MET CYS MET GLU GLY PRO GLY ASP GLU GLU VAL PRO SEQRES 11 A 149 LEU PRO HIS LYS THR PRO ILE GLN PRO GLY GLU GLY THR SEQRES 12 A 149 LEU GLU VAL LEU PHE GLN SEQRES 1 B 149 ASP THR GLY GLU ARG ARG CYS ASP PRO ILE ARG ILE SER SEQRES 2 B 149 MET CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO SEQRES 3 B 149 ASN LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU SEQRES 4 B 149 GLN LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SEQRES 5 B 149 SER SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL SEQRES 6 B 149 PRO MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO SEQRES 7 B 149 CYS GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU SEQRES 8 B 149 PRO VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER SEQRES 9 B 149 LEU ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN SEQRES 10 B 149 HIS MET CYS MET GLU GLY PRO GLY ASP GLU GLU VAL PRO SEQRES 11 B 149 LEU PRO HIS LYS THR PRO ILE GLN PRO GLY GLU GLY THR SEQRES 12 B 149 LEU GLU VAL LEU PHE GLN SEQRES 1 D 149 ASP THR GLY GLU ARG ARG CYS ASP PRO ILE ARG ILE SER SEQRES 2 D 149 MET CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO SEQRES 3 D 149 ASN LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU SEQRES 4 D 149 GLN LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SEQRES 5 D 149 SER SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL SEQRES 6 D 149 PRO MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO SEQRES 7 D 149 CYS GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU SEQRES 8 D 149 PRO VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER SEQRES 9 D 149 LEU ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN SEQRES 10 D 149 HIS MET CYS MET GLU GLY PRO GLY ASP GLU GLU VAL PRO SEQRES 11 D 149 LEU PRO HIS LYS THR PRO ILE GLN PRO GLY GLU GLY THR SEQRES 12 D 149 LEU GLU VAL LEU PHE GLN SEQRES 1 C 149 ASP THR GLY GLU ARG ARG CYS ASP PRO ILE ARG ILE SER SEQRES 2 C 149 MET CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO SEQRES 3 C 149 ASN LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU SEQRES 4 C 149 GLN LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SEQRES 5 C 149 SER SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL SEQRES 6 C 149 PRO MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO SEQRES 7 C 149 CYS GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU SEQRES 8 C 149 PRO VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER SEQRES 9 C 149 LEU ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN SEQRES 10 C 149 HIS MET CYS MET GLU GLY PRO GLY ASP GLU GLU VAL PRO SEQRES 11 C 149 LEU PRO HIS LYS THR PRO ILE GLN PRO GLY GLU GLY THR SEQRES 12 C 149 LEU GLU VAL LEU PHE GLN HET NAG A 201 14 HET NAG B 201 14 HET NAG B 202 14 HET NAG D 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 9 HOH *148(H2 O) HELIX 1 AA1 ILE A 50 GLN A 54 5 5 HELIX 2 AA2 LEU A 71 THR A 80 1 10 HELIX 3 AA3 PHE A 82 GLY A 89 1 8 HELIX 4 AA4 GLN A 93 VAL A 103 1 11 HELIX 5 AA5 CYS A 117 PHE A 135 1 19 HELIX 6 AA6 PRO A 140 PHE A 148 5 9 HELIX 7 AA7 ILE B 50 GLN B 54 5 5 HELIX 8 AA8 LEU B 71 THR B 80 1 10 HELIX 9 AA9 PHE B 82 GLY B 89 1 8 HELIX 10 AB1 GLN B 93 VAL B 103 1 11 HELIX 11 AB2 CYS B 117 PHE B 135 1 19 HELIX 12 AB3 PRO B 140 PHE B 148 5 9 HELIX 13 AB4 ILE D 50 GLN D 54 5 5 HELIX 14 AB5 LEU D 71 THR D 81 1 11 HELIX 15 AB6 PHE D 82 GLY D 89 1 8 HELIX 16 AB7 GLN D 93 VAL D 103 1 11 HELIX 17 AB8 CYS D 117 PHE D 135 1 19 HELIX 18 AB9 PRO D 140 PHE D 148 5 9 HELIX 19 AC1 ILE C 50 GLN C 54 5 5 HELIX 20 AC2 LEU C 71 THR C 81 1 11 HELIX 21 AC3 PHE C 82 GLY C 89 1 8 HELIX 22 AC4 GLN C 93 VAL C 103 1 11 HELIX 23 AC5 CYS C 117 PHE C 135 1 19 HELIX 24 AC6 PRO C 140 PHE C 148 5 9 SHEET 1 AA1 2 ASP A 46 PRO A 47 0 SHEET 2 AA1 2 VAL A 60 THR A 61 -1 O THR A 61 N ASP A 46 SHEET 1 AA2 2 MET A 105 THR A 107 0 SHEET 2 AA2 2 ILE A 110 ILE A 114 -1 O ILE A 114 N MET A 105 SHEET 1 AA3 2 ASP B 46 PRO B 47 0 SHEET 2 AA3 2 VAL B 60 THR B 61 -1 O THR B 61 N ASP B 46 SHEET 1 AA4 2 MET B 105 THR B 107 0 SHEET 2 AA4 2 ILE B 110 ILE B 114 -1 O ILE B 114 N MET B 105 SHEET 1 AA5 2 ASP D 46 PRO D 47 0 SHEET 2 AA5 2 VAL D 60 THR D 61 -1 O THR D 61 N ASP D 46 SHEET 1 AA6 2 ASP C 46 PRO C 47 0 SHEET 2 AA6 2 VAL C 60 THR C 61 -1 O THR C 61 N ASP C 46 SSBOND 1 CYS A 45 CYS A 106 1555 1555 2.04 SSBOND 2 CYS A 53 CYS A 99 1555 1555 2.05 SSBOND 3 CYS A 90 CYS A 128 1555 1555 2.08 SSBOND 4 CYS A 117 CYS A 158 1555 1555 2.04 SSBOND 5 CYS A 121 CYS A 145 1555 1555 2.07 SSBOND 6 CYS B 45 CYS B 106 1555 1555 2.06 SSBOND 7 CYS B 53 CYS B 99 1555 1555 2.06 SSBOND 8 CYS B 90 CYS B 128 1555 1555 2.09 SSBOND 9 CYS B 117 CYS B 158 1555 1555 2.05 SSBOND 10 CYS B 121 CYS B 145 1555 1555 2.06 SSBOND 11 CYS D 45 CYS D 106 1555 1555 2.05 SSBOND 12 CYS D 53 CYS D 99 1555 1555 2.04 SSBOND 13 CYS D 90 CYS D 128 1555 1555 2.11 SSBOND 14 CYS D 117 CYS D 158 1555 1555 2.04 SSBOND 15 CYS D 121 CYS D 145 1555 1555 2.05 SSBOND 16 CYS C 45 CYS C 106 1555 1555 2.05 SSBOND 17 CYS C 53 CYS C 99 1555 1555 2.05 SSBOND 18 CYS C 90 CYS C 128 1555 1555 2.07 SSBOND 19 CYS C 117 CYS C 158 1555 1555 2.04 SSBOND 20 CYS C 121 CYS C 145 1555 1555 2.05 LINK ND2 ASN A 144 C1 NAG A 201 1555 1555 1.46 LINK ND2 ASN B 59 C1 NAG B 202 1555 1555 1.45 LINK ND2 ASN B 144 C1 NAG B 201 1555 1555 1.45 LINK ND2 ASN D 144 C1 NAG D 201 1555 1555 1.45 CISPEP 1 MET A 63 PRO A 64 0 6.40 CISPEP 2 MET B 63 PRO B 64 0 4.38 CISPEP 3 MET D 63 PRO D 64 0 5.75 CISPEP 4 MET C 63 PRO C 64 0 7.17 CRYST1 72.608 102.140 116.508 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008583 0.00000