HEADER SIGNALING PROTEIN 28-MAY-15 5BPQ TITLE CRYSTAL STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF HUMAN FRIZZLED 4 - TITLE 2 CRYSTAL FORM II CAVEAT 5BPQ NAG D 201 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIZZLED-4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CYSTEINE-RICH DOMAIN, UNP RESIDUES 42-179; COMPND 5 SYNONYM: HFZ4,FZE4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FZD4; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHLSEC-MVENUS-12H KEYWDS WNT SIGNALLING PATHWAY, GLYCOPROTEIN, G PROTEIN COUPLED RECEPTOR, KEYWDS 2 RECEPTOR FOR NORRIN RECOGNITION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.-H.CHANG,F.-L.HSIEH,K.HARLOS,E.Y.JONES REVDAT 6 10-JAN-24 5BPQ 1 HETSYN REVDAT 5 29-JUL-20 5BPQ 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-SEP-17 5BPQ 1 REMARK REVDAT 3 29-JUL-15 5BPQ 1 JRNL REVDAT 2 22-JUL-15 5BPQ 1 JRNL REVDAT 1 01-JUL-15 5BPQ 0 JRNL AUTH T.H.CHANG,F.L.HSIEH,M.ZEBISCH,K.HARLOS,J.ELEGHEERT,E.Y.JONES JRNL TITL STRUCTURE AND FUNCTIONAL PROPERTIES OF NORRIN MIMIC WNT FOR JRNL TITL 2 SIGNALLING WITH FRIZZLED4, LRP5/6, AND PROTEOGLYCAN. JRNL REF ELIFE V. 4 06554 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26158506 JRNL DOI 10.7554/ELIFE.06554 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1833 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -2.15000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.577 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3885 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3599 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5278 ; 1.075 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8344 ; 0.762 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 5.616 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;36.074 ;24.969 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 653 ;19.578 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 575 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4304 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 839 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1896 ; 0.972 ; 3.250 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1895 ; 0.971 ; 3.249 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2363 ; 1.269 ; 4.869 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7484 ; 0.708 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 44 ;43.226 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7390 ; 4.654 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 67.3736 49.5007 9.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.3299 REMARK 3 T33: 0.5642 T12: -0.0032 REMARK 3 T13: -0.0329 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 3.6435 L22: 3.4734 REMARK 3 L33: 2.8359 L12: -0.8246 REMARK 3 L13: -0.5463 L23: 0.9684 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.0491 S13: 0.0450 REMARK 3 S21: -0.1085 S22: 0.0077 S23: -0.2951 REMARK 3 S31: -0.0045 S32: 0.2828 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 162 REMARK 3 ORIGIN FOR THE GROUP (A): 105.1377 49.6489 9.3538 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: 0.4974 REMARK 3 T33: 0.6759 T12: 0.0603 REMARK 3 T13: -0.0518 T23: -0.0758 REMARK 3 L TENSOR REMARK 3 L11: 5.8131 L22: 3.4324 REMARK 3 L33: 2.3204 L12: 1.9633 REMARK 3 L13: 0.3742 L23: 0.9298 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: -0.0756 S13: 0.0210 REMARK 3 S21: 0.1509 S22: 0.1080 S23: 0.3038 REMARK 3 S31: 0.1380 S32: -0.3001 S33: -0.0443 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 45 C 162 REMARK 3 ORIGIN FOR THE GROUP (A): 84.5322 12.2088 23.2084 REMARK 3 T TENSOR REMARK 3 T11: 0.3754 T22: 0.4407 REMARK 3 T33: 0.6430 T12: 0.0902 REMARK 3 T13: -0.0183 T23: -0.0696 REMARK 3 L TENSOR REMARK 3 L11: 4.9968 L22: 5.8155 REMARK 3 L33: 2.9402 L12: -0.7662 REMARK 3 L13: 0.1867 L23: 0.6518 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.1847 S13: 0.6059 REMARK 3 S21: -0.0825 S22: -0.1856 S23: 0.5533 REMARK 3 S31: -0.8719 S32: -0.5962 S33: 0.1320 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 44 D 162 REMARK 3 ORIGIN FOR THE GROUP (A): 50.1024 30.6133 8.3165 REMARK 3 T TENSOR REMARK 3 T11: 0.1871 T22: 0.2551 REMARK 3 T33: 0.6276 T12: -0.0204 REMARK 3 T13: -0.0958 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 2.5028 L22: 3.3712 REMARK 3 L33: 5.9832 L12: 0.5028 REMARK 3 L13: -0.6767 L23: -0.0472 REMARK 3 S TENSOR REMARK 3 S11: 0.1430 S12: -0.3244 S13: -0.4765 REMARK 3 S21: 0.3294 S22: -0.1752 S23: 0.1118 REMARK 3 S31: 0.6296 S32: -0.0563 S33: 0.0322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25975 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.60600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5BPB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 0.1 M NACL, 1.6 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.15667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.31333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.23500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 170.39167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.07833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 39 REMARK 465 THR A 40 REMARK 465 GLY A 41 REMARK 465 GLU A 42 REMARK 465 ARG A 43 REMARK 465 GLY A 163 REMARK 465 ASP A 164 REMARK 465 GLU A 165 REMARK 465 GLU A 166 REMARK 465 VAL A 167 REMARK 465 PRO A 168 REMARK 465 LEU A 169 REMARK 465 PRO A 170 REMARK 465 HIS A 171 REMARK 465 LYS A 172 REMARK 465 THR A 173 REMARK 465 PRO A 174 REMARK 465 ILE A 175 REMARK 465 GLN A 176 REMARK 465 PRO A 177 REMARK 465 GLY A 178 REMARK 465 GLU A 179 REMARK 465 GLY A 180 REMARK 465 THR A 181 REMARK 465 LEU A 182 REMARK 465 GLU A 183 REMARK 465 VAL A 184 REMARK 465 LEU A 185 REMARK 465 PHE A 186 REMARK 465 GLN A 187 REMARK 465 ASP B 39 REMARK 465 THR B 40 REMARK 465 GLY B 41 REMARK 465 GLU B 42 REMARK 465 ARG B 43 REMARK 465 GLY B 163 REMARK 465 ASP B 164 REMARK 465 GLU B 165 REMARK 465 GLU B 166 REMARK 465 VAL B 167 REMARK 465 PRO B 168 REMARK 465 LEU B 169 REMARK 465 PRO B 170 REMARK 465 HIS B 171 REMARK 465 LYS B 172 REMARK 465 THR B 173 REMARK 465 PRO B 174 REMARK 465 ILE B 175 REMARK 465 GLN B 176 REMARK 465 PRO B 177 REMARK 465 GLY B 178 REMARK 465 GLU B 179 REMARK 465 GLY B 180 REMARK 465 THR B 181 REMARK 465 LEU B 182 REMARK 465 GLU B 183 REMARK 465 VAL B 184 REMARK 465 LEU B 185 REMARK 465 PHE B 186 REMARK 465 GLN B 187 REMARK 465 ASP C 39 REMARK 465 THR C 40 REMARK 465 GLY C 41 REMARK 465 GLU C 42 REMARK 465 ARG C 43 REMARK 465 ARG C 44 REMARK 465 GLY C 163 REMARK 465 ASP C 164 REMARK 465 GLU C 165 REMARK 465 GLU C 166 REMARK 465 VAL C 167 REMARK 465 PRO C 168 REMARK 465 LEU C 169 REMARK 465 PRO C 170 REMARK 465 HIS C 171 REMARK 465 LYS C 172 REMARK 465 THR C 173 REMARK 465 PRO C 174 REMARK 465 ILE C 175 REMARK 465 GLN C 176 REMARK 465 PRO C 177 REMARK 465 GLY C 178 REMARK 465 GLU C 179 REMARK 465 GLY C 180 REMARK 465 THR C 181 REMARK 465 LEU C 182 REMARK 465 GLU C 183 REMARK 465 VAL C 184 REMARK 465 LEU C 185 REMARK 465 PHE C 186 REMARK 465 GLN C 187 REMARK 465 ASP D 39 REMARK 465 THR D 40 REMARK 465 GLY D 41 REMARK 465 GLU D 42 REMARK 465 ARG D 43 REMARK 465 GLY D 163 REMARK 465 ASP D 164 REMARK 465 GLU D 165 REMARK 465 GLU D 166 REMARK 465 VAL D 167 REMARK 465 PRO D 168 REMARK 465 LEU D 169 REMARK 465 PRO D 170 REMARK 465 HIS D 171 REMARK 465 LYS D 172 REMARK 465 THR D 173 REMARK 465 PRO D 174 REMARK 465 ILE D 175 REMARK 465 GLN D 176 REMARK 465 PRO D 177 REMARK 465 GLY D 178 REMARK 465 GLU D 179 REMARK 465 GLY D 180 REMARK 465 THR D 181 REMARK 465 LEU D 182 REMARK 465 GLU D 183 REMARK 465 VAL D 184 REMARK 465 LEU D 185 REMARK 465 PHE D 186 REMARK 465 GLN D 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 53 55.85 -120.00 REMARK 500 ASN A 55 57.95 -94.86 REMARK 500 CYS B 53 45.82 -99.15 REMARK 500 ASN C 59 15.65 -143.67 REMARK 500 CYS D 53 40.91 -109.59 REMARK 500 ASN D 59 28.80 -147.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 309 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH D 325 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH D 326 DISTANCE = 7.68 ANGSTROMS DBREF 5BPQ A 42 179 UNP Q9ULV1 FZD4_HUMAN 42 179 DBREF 5BPQ B 42 179 UNP Q9ULV1 FZD4_HUMAN 42 179 DBREF 5BPQ C 42 179 UNP Q9ULV1 FZD4_HUMAN 42 179 DBREF 5BPQ D 42 179 UNP Q9ULV1 FZD4_HUMAN 42 179 SEQADV 5BPQ ASP A 39 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ THR A 40 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLY A 41 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLY A 180 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ THR A 181 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ LEU A 182 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLU A 183 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ VAL A 184 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ LEU A 185 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ PHE A 186 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLN A 187 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ ASP B 39 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ THR B 40 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLY B 41 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLY B 180 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ THR B 181 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ LEU B 182 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLU B 183 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ VAL B 184 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ LEU B 185 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ PHE B 186 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLN B 187 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ ASP C 39 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ THR C 40 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLY C 41 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLY C 180 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ THR C 181 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ LEU C 182 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLU C 183 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ VAL C 184 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ LEU C 185 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ PHE C 186 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLN C 187 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ ASP D 39 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ THR D 40 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLY D 41 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLY D 180 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ THR D 181 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ LEU D 182 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLU D 183 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ VAL D 184 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ LEU D 185 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ PHE D 186 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BPQ GLN D 187 UNP Q9ULV1 EXPRESSION TAG SEQRES 1 A 149 ASP THR GLY GLU ARG ARG CYS ASP PRO ILE ARG ILE SER SEQRES 2 A 149 MET CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO SEQRES 3 A 149 ASN LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU SEQRES 4 A 149 GLN LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SEQRES 5 A 149 SER SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL SEQRES 6 A 149 PRO MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO SEQRES 7 A 149 CYS GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU SEQRES 8 A 149 PRO VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER SEQRES 9 A 149 LEU ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN SEQRES 10 A 149 HIS MET CYS MET GLU GLY PRO GLY ASP GLU GLU VAL PRO SEQRES 11 A 149 LEU PRO HIS LYS THR PRO ILE GLN PRO GLY GLU GLY THR SEQRES 12 A 149 LEU GLU VAL LEU PHE GLN SEQRES 1 B 149 ASP THR GLY GLU ARG ARG CYS ASP PRO ILE ARG ILE SER SEQRES 2 B 149 MET CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO SEQRES 3 B 149 ASN LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU SEQRES 4 B 149 GLN LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SEQRES 5 B 149 SER SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL SEQRES 6 B 149 PRO MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO SEQRES 7 B 149 CYS GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU SEQRES 8 B 149 PRO VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER SEQRES 9 B 149 LEU ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN SEQRES 10 B 149 HIS MET CYS MET GLU GLY PRO GLY ASP GLU GLU VAL PRO SEQRES 11 B 149 LEU PRO HIS LYS THR PRO ILE GLN PRO GLY GLU GLY THR SEQRES 12 B 149 LEU GLU VAL LEU PHE GLN SEQRES 1 C 149 ASP THR GLY GLU ARG ARG CYS ASP PRO ILE ARG ILE SER SEQRES 2 C 149 MET CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO SEQRES 3 C 149 ASN LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU SEQRES 4 C 149 GLN LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SEQRES 5 C 149 SER SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL SEQRES 6 C 149 PRO MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO SEQRES 7 C 149 CYS GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU SEQRES 8 C 149 PRO VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER SEQRES 9 C 149 LEU ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN SEQRES 10 C 149 HIS MET CYS MET GLU GLY PRO GLY ASP GLU GLU VAL PRO SEQRES 11 C 149 LEU PRO HIS LYS THR PRO ILE GLN PRO GLY GLU GLY THR SEQRES 12 C 149 LEU GLU VAL LEU PHE GLN SEQRES 1 D 149 ASP THR GLY GLU ARG ARG CYS ASP PRO ILE ARG ILE SER SEQRES 2 D 149 MET CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO SEQRES 3 D 149 ASN LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU SEQRES 4 D 149 GLN LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SEQRES 5 D 149 SER SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL SEQRES 6 D 149 PRO MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO SEQRES 7 D 149 CYS GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU SEQRES 8 D 149 PRO VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER SEQRES 9 D 149 LEU ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN SEQRES 10 D 149 HIS MET CYS MET GLU GLY PRO GLY ASP GLU GLU VAL PRO SEQRES 11 D 149 LEU PRO HIS LYS THR PRO ILE GLN PRO GLY GLU GLY THR SEQRES 12 D 149 LEU GLU VAL LEU PHE GLN HET NAG A 201 14 HET CL A 202 1 HET NAG B 201 14 HET NAG C 201 14 HET NAG D 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 6 CL CL 1- FORMUL 10 HOH *69(H2 O) HELIX 1 AA1 LEU A 71 THR A 80 1 10 HELIX 2 AA2 PHE A 82 GLY A 89 1 8 HELIX 3 AA3 GLN A 93 VAL A 103 1 11 HELIX 4 AA4 CYS A 117 PHE A 135 1 19 HELIX 5 AA5 PRO A 140 PHE A 148 5 9 HELIX 6 AA6 ILE B 50 GLN B 54 5 5 HELIX 7 AA7 LEU B 71 THR B 81 1 11 HELIX 8 AA8 PHE B 82 GLY B 89 1 8 HELIX 9 AA9 GLN B 93 VAL B 103 1 11 HELIX 10 AB1 CYS B 117 PHE B 135 1 19 HELIX 11 AB2 PRO B 140 PHE B 148 5 9 HELIX 12 AB3 LEU C 71 THR C 80 1 10 HELIX 13 AB4 PHE C 82 GLY C 89 1 8 HELIX 14 AB5 GLN C 93 VAL C 103 1 11 HELIX 15 AB6 CYS C 117 PHE C 135 1 19 HELIX 16 AB7 PRO C 140 PHE C 148 5 9 HELIX 17 AB8 ILE D 50 GLN D 54 5 5 HELIX 18 AB9 LEU D 71 THR D 80 1 10 HELIX 19 AC1 PHE D 82 GLY D 89 1 8 HELIX 20 AC2 GLN D 93 VAL D 103 1 11 HELIX 21 AC3 CYS D 117 PHE D 135 1 19 HELIX 22 AC4 PRO D 140 PHE D 148 5 9 SHEET 1 AA1 2 ASP A 46 PRO A 47 0 SHEET 2 AA1 2 VAL A 60 THR A 61 -1 O THR A 61 N ASP A 46 SHEET 1 AA2 2 MET A 105 THR A 107 0 SHEET 2 AA2 2 ILE A 110 ILE A 114 -1 O ILE A 114 N MET A 105 SHEET 1 AA3 2 ASP B 46 PRO B 47 0 SHEET 2 AA3 2 VAL B 60 THR B 61 -1 O THR B 61 N ASP B 46 SHEET 1 AA4 2 ASP C 46 PRO C 47 0 SHEET 2 AA4 2 VAL C 60 THR C 61 -1 O THR C 61 N ASP C 46 SHEET 1 AA5 2 ASP D 46 PRO D 47 0 SHEET 2 AA5 2 VAL D 60 THR D 61 -1 O THR D 61 N ASP D 46 SSBOND 1 CYS A 45 CYS A 106 1555 1555 2.04 SSBOND 2 CYS A 53 CYS A 99 1555 1555 2.03 SSBOND 3 CYS A 90 CYS A 128 1555 1555 2.05 SSBOND 4 CYS A 117 CYS A 158 1555 1555 2.04 SSBOND 5 CYS A 121 CYS A 145 1555 1555 2.04 SSBOND 6 CYS B 45 CYS B 106 1555 1555 2.03 SSBOND 7 CYS B 53 CYS B 99 1555 1555 2.03 SSBOND 8 CYS B 90 CYS B 128 1555 1555 2.04 SSBOND 9 CYS B 117 CYS B 158 1555 1555 2.04 SSBOND 10 CYS B 121 CYS B 145 1555 1555 2.04 SSBOND 11 CYS C 45 CYS C 106 1555 1555 2.04 SSBOND 12 CYS C 53 CYS C 99 1555 1555 2.04 SSBOND 13 CYS C 90 CYS C 128 1555 1555 2.04 SSBOND 14 CYS C 117 CYS C 158 1555 1555 2.02 SSBOND 15 CYS C 121 CYS C 145 1555 1555 2.04 SSBOND 16 CYS D 45 CYS D 106 1555 1555 2.04 SSBOND 17 CYS D 53 CYS D 99 1555 1555 2.03 SSBOND 18 CYS D 90 CYS D 128 1555 1555 2.04 SSBOND 19 CYS D 117 CYS D 158 1555 1555 2.03 SSBOND 20 CYS D 121 CYS D 145 1555 1555 2.04 LINK ND2 ASN A 144 C1 NAG A 201 1555 1555 1.44 LINK ND2 ASN B 144 C1 NAG B 201 1555 1555 1.45 LINK ND2 ASN C 144 C1 NAG C 201 1555 1555 1.44 LINK ND2 ASN D 144 C1 NAG D 201 1555 1555 1.45 CISPEP 1 MET A 63 PRO A 64 0 6.99 CISPEP 2 MET B 63 PRO B 64 0 3.68 CISPEP 3 MET C 63 PRO C 64 0 0.19 CISPEP 4 MET D 63 PRO D 64 0 3.59 CRYST1 76.075 76.075 204.470 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013145 0.007589 0.000000 0.00000 SCALE2 0.000000 0.015178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004891 0.00000