HEADER MEMBRANE PROTEIN/ANTIBIOTIC 28-MAY-15 5BPS TITLE STRUCTURE OF THE YEAST F1FO ATPASE C10 RING WITH OLIGOMYCIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D, E, K, L, M, N, O; COMPND 4 SYNONYM: LIPID-BINDING PROTEIN, OLIGOMYCIN RESISTANCE PROTEIN 1; COMPND 5 EC: 3.6.-.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS C10 RING, F1FO ATP SYNTHASE, OLIGOMYCIN A, MITOCHONDRIA, MEMBRANE, KEYWDS 2 PROTEIN-ANTIBIOTIC COMPLEX, MEMBRANE PROTEIN-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.SYMERSKY,T.XU,D.M.MUELLER REVDAT 5 16-OCT-24 5BPS 1 REMARK REVDAT 4 27-SEP-23 5BPS 1 REMARK REVDAT 3 27-NOV-19 5BPS 1 REMARK REVDAT 2 06-SEP-17 5BPS 1 REMARK REVDAT 1 26-AUG-15 5BPS 0 JRNL AUTH D.M.MUELLER JRNL TITL STRUCTURE OF THE YEAST F1FO ATPASE C10 RING WITH OLIGOMYCIN JRNL TITL 2 A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SYMERSKY,D.OSOWSKI,D.E.WALTERS,D.M.MUELLER REMARK 1 TITL OLIGOMYCIN FRAMES A COMMON DRUG-BINDING SITE IN THE ATP REMARK 1 TITL 2 SYNTHASE. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 109 13961 2012 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 22869738 REMARK 1 DOI 10.1073/PNAS.1207912109 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2163 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2663 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 392 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.617 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6013 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8242 ; 1.260 ; 2.067 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 831 ; 3.842 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;39.475 ;23.101 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 894 ;13.716 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 9.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1117 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4079 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 48.4126 8.4837 31.8670 REMARK 3 T TENSOR REMARK 3 T11: 0.0367 T22: 0.0922 REMARK 3 T33: 0.0945 T12: 0.0055 REMARK 3 T13: -0.0094 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 0.8212 L22: 0.7615 REMARK 3 L33: 16.9404 L12: -0.0038 REMARK 3 L13: -2.0604 L23: -1.1138 REMARK 3 S TENSOR REMARK 3 S11: 0.1050 S12: -0.1931 S13: 0.1087 REMARK 3 S21: 0.1296 S22: 0.1868 S23: -0.0965 REMARK 3 S31: -0.3367 S32: 0.1249 S33: -0.2918 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9128 16.3408 27.9283 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.1411 REMARK 3 T33: 0.1642 T12: -0.0377 REMARK 3 T13: -0.0264 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.3692 L22: 0.8913 REMARK 3 L33: 18.5174 L12: -0.1175 REMARK 3 L13: -1.7276 L23: -0.9975 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: -0.2245 S13: 0.0488 REMARK 3 S21: 0.1726 S22: 0.0457 S23: -0.1098 REMARK 3 S31: -0.3382 S32: 0.9376 S33: -0.0917 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4765 12.9128 31.8582 REMARK 3 T TENSOR REMARK 3 T11: 0.0569 T22: 0.0736 REMARK 3 T33: 0.0996 T12: 0.0089 REMARK 3 T13: 0.0025 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.8324 L22: 0.9414 REMARK 3 L33: 19.1758 L12: -0.0641 REMARK 3 L13: -1.6341 L23: -2.3125 REMARK 3 S TENSOR REMARK 3 S11: 0.1031 S12: -0.1919 S13: 0.1026 REMARK 3 S21: 0.1454 S22: 0.1791 S23: 0.0212 REMARK 3 S31: -0.1832 S32: 0.0853 S33: -0.2822 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8621 20.7855 28.4215 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0690 REMARK 3 T33: 0.1494 T12: -0.0045 REMARK 3 T13: -0.0052 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.7571 L22: 0.8263 REMARK 3 L33: 15.7942 L12: -0.0789 REMARK 3 L13: -0.2312 L23: -1.7660 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.2174 S13: 0.1326 REMARK 3 S21: 0.1590 S22: 0.0324 S23: -0.0472 REMARK 3 S31: -0.4722 S32: 0.1793 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 41 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2317 12.3818 32.0010 REMARK 3 T TENSOR REMARK 3 T11: 0.0794 T22: 0.1207 REMARK 3 T33: 0.0911 T12: 0.0121 REMARK 3 T13: 0.0279 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.8771 L22: 0.8958 REMARK 3 L33: 22.1429 L12: 0.0703 REMARK 3 L13: -0.5146 L23: -1.9865 REMARK 3 S TENSOR REMARK 3 S11: 0.1969 S12: -0.1948 S13: 0.0623 REMARK 3 S21: 0.1760 S22: 0.2138 S23: 0.1545 REMARK 3 S31: -0.1116 S32: 0.1940 S33: -0.4106 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 42 C 75 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5906 17.1322 28.3753 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.0600 REMARK 3 T33: 0.1530 T12: 0.0303 REMARK 3 T13: -0.0003 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.0088 L22: 0.4787 REMARK 3 L33: 21.4237 L12: -0.0191 REMARK 3 L13: 0.5862 L23: -2.3564 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.2207 S13: 0.0551 REMARK 3 S21: 0.2032 S22: 0.0355 S23: 0.0239 REMARK 3 S31: -0.9014 S32: -0.2439 S33: -0.0053 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 41 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9557 7.1030 31.8876 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.0655 REMARK 3 T33: 0.0861 T12: 0.0087 REMARK 3 T13: 0.0253 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.8251 L22: 0.9465 REMARK 3 L33: 17.0536 L12: -0.1817 REMARK 3 L13: 0.6895 L23: -2.1774 REMARK 3 S TENSOR REMARK 3 S11: 0.1083 S12: -0.1782 S13: -0.0135 REMARK 3 S21: 0.1805 S22: 0.1508 S23: 0.1373 REMARK 3 S31: -0.1657 S32: -0.0200 S33: -0.2591 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 42 D 74 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7428 7.1650 28.1155 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.1206 REMARK 3 T33: 0.1590 T12: 0.0295 REMARK 3 T13: 0.0313 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.5821 L22: 0.2896 REMARK 3 L33: 18.0944 L12: 0.0689 REMARK 3 L13: 0.9206 L23: -0.7561 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: -0.1448 S13: 0.0659 REMARK 3 S21: 0.1214 S22: -0.0067 S23: 0.1232 REMARK 3 S31: -0.5787 S32: -0.6107 S33: 0.0142 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 41 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8050 -0.8655 32.0373 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.1195 REMARK 3 T33: 0.1055 T12: 0.0184 REMARK 3 T13: 0.0293 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.6989 L22: 0.9420 REMARK 3 L33: 20.9540 L12: -0.1436 REMARK 3 L13: 2.2200 L23: -0.7128 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.2015 S13: -0.0593 REMARK 3 S21: 0.1707 S22: 0.2409 S23: 0.1648 REMARK 3 S31: -0.0403 S32: -0.2417 S33: -0.2958 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 42 E 74 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1330 -5.6689 28.0585 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.1537 REMARK 3 T33: 0.1623 T12: 0.0109 REMARK 3 T13: 0.0296 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.5679 L22: 0.8423 REMARK 3 L33: 21.4467 L12: 0.0571 REMARK 3 L13: 2.2763 L23: 0.1854 REMARK 3 S TENSOR REMARK 3 S11: -0.0695 S12: -0.2399 S13: -0.0278 REMARK 3 S21: 0.1451 S22: -0.0032 S23: 0.1495 REMARK 3 S31: -0.1269 S32: -0.7901 S33: 0.0727 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 41 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4944 27.8405 31.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.0903 T22: 0.1567 REMARK 3 T33: 0.0850 T12: -0.0738 REMARK 3 T13: 0.0016 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.9866 L22: 0.9140 REMARK 3 L33: 12.1545 L12: 0.2963 REMARK 3 L13: 0.8924 L23: 1.2073 REMARK 3 S TENSOR REMARK 3 S11: 0.2369 S12: -0.3370 S13: -0.0899 REMARK 3 S21: 0.2295 S22: -0.0225 S23: 0.0371 REMARK 3 S31: 0.3382 S32: 0.1420 S33: -0.2143 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 42 K 75 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4643 19.5947 28.7426 REMARK 3 T TENSOR REMARK 3 T11: 0.1160 T22: 0.1917 REMARK 3 T33: 0.1496 T12: -0.0761 REMARK 3 T13: -0.0030 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.6814 L22: 0.9657 REMARK 3 L33: 18.8160 L12: -0.0485 REMARK 3 L13: -0.3149 L23: 1.6387 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.2763 S13: -0.0589 REMARK 3 S21: 0.2656 S22: -0.1680 S23: 0.0183 REMARK 3 S31: 0.2840 S32: -0.3256 S33: 0.1997 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 41 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9097 24.8815 31.8952 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.2157 REMARK 3 T33: 0.0988 T12: -0.1183 REMARK 3 T13: -0.0414 T23: 0.0718 REMARK 3 L TENSOR REMARK 3 L11: 0.6278 L22: 1.2449 REMARK 3 L33: 20.6348 L12: 0.2820 REMARK 3 L13: 1.3096 L23: 2.1361 REMARK 3 S TENSOR REMARK 3 S11: 0.2428 S12: -0.3370 S13: -0.1306 REMARK 3 S21: 0.2325 S22: 0.0293 S23: -0.0703 REMARK 3 S31: 0.1594 S32: -0.1249 S33: -0.2721 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 42 L 75 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0373 17.5994 28.7720 REMARK 3 T TENSOR REMARK 3 T11: 0.1629 T22: 0.2038 REMARK 3 T33: 0.1924 T12: -0.0849 REMARK 3 T13: -0.0373 T23: 0.0944 REMARK 3 L TENSOR REMARK 3 L11: 0.7175 L22: 0.3357 REMARK 3 L33: 17.5052 L12: -0.1815 REMARK 3 L13: -0.4714 L23: 1.6088 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.3011 S13: -0.1450 REMARK 3 S21: 0.2105 S22: -0.0384 S23: 0.0088 REMARK 3 S31: 0.7715 S32: 0.1915 S33: 0.0671 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 1 M 41 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0723 26.8559 32.2680 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.2003 REMARK 3 T33: 0.1036 T12: -0.1288 REMARK 3 T13: -0.0532 T23: 0.0879 REMARK 3 L TENSOR REMARK 3 L11: 0.6043 L22: 1.0422 REMARK 3 L33: 22.8216 L12: -0.0769 REMARK 3 L13: -0.3546 L23: 2.4215 REMARK 3 S TENSOR REMARK 3 S11: 0.2161 S12: -0.3345 S13: -0.0999 REMARK 3 S21: 0.2178 S22: 0.0145 S23: -0.0660 REMARK 3 S31: 0.1359 S32: 0.3023 S33: -0.2305 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 42 M 75 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6462 23.5175 28.2470 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.1810 REMARK 3 T33: 0.1762 T12: -0.0495 REMARK 3 T13: -0.0531 T23: 0.0946 REMARK 3 L TENSOR REMARK 3 L11: 1.2910 L22: 1.1096 REMARK 3 L33: 20.5446 L12: -0.0871 REMARK 3 L13: -0.3294 L23: 2.7985 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: -0.4412 S13: -0.1512 REMARK 3 S21: 0.3426 S22: -0.0758 S23: -0.0957 REMARK 3 S31: 0.9789 S32: 0.2021 S33: 0.0188 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 1 N 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4144 33.1648 32.7227 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1515 REMARK 3 T33: 0.1091 T12: -0.1035 REMARK 3 T13: -0.0497 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 0.8671 L22: 0.7435 REMARK 3 L33: 14.8311 L12: -0.1641 REMARK 3 L13: -1.3285 L23: 2.1287 REMARK 3 S TENSOR REMARK 3 S11: 0.1887 S12: -0.3203 S13: -0.0417 REMARK 3 S21: 0.2211 S22: -0.0293 S23: -0.0963 REMARK 3 S31: 0.3674 S32: -0.0073 S33: -0.1594 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 42 N 75 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4310 34.6974 28.8475 REMARK 3 T TENSOR REMARK 3 T11: 0.0832 T22: 0.1683 REMARK 3 T33: 0.1522 T12: -0.0391 REMARK 3 T13: -0.0513 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 0.8588 L22: 0.6114 REMARK 3 L33: 16.8687 L12: 0.1516 REMARK 3 L13: -0.6345 L23: 1.4415 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: -0.3088 S13: -0.0772 REMARK 3 S21: 0.2151 S22: -0.0419 S23: -0.1088 REMARK 3 S31: 0.5488 S32: 0.5949 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 1 O 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9500 41.4895 32.3781 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.1783 REMARK 3 T33: 0.0993 T12: -0.0944 REMARK 3 T13: -0.0357 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.9442 L22: 0.8339 REMARK 3 L33: 11.8141 L12: 0.0816 REMARK 3 L13: -2.1573 L23: 0.0500 REMARK 3 S TENSOR REMARK 3 S11: 0.1769 S12: -0.3112 S13: 0.0045 REMARK 3 S21: 0.1906 S22: 0.0275 S23: -0.1033 REMARK 3 S31: 0.1258 S32: 0.0433 S33: -0.2045 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 42 O 75 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4987 47.4477 28.7412 REMARK 3 T TENSOR REMARK 3 T11: 0.0763 T22: 0.1950 REMARK 3 T33: 0.1337 T12: -0.0747 REMARK 3 T13: -0.0272 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.7757 L22: 1.0986 REMARK 3 L33: 23.2022 L12: 0.2713 REMARK 3 L13: -2.1638 L23: -0.9286 REMARK 3 S TENSOR REMARK 3 S11: 0.0698 S12: -0.3276 S13: 0.0200 REMARK 3 S21: 0.2285 S22: -0.1453 S23: -0.0698 REMARK 3 S31: 0.0884 S32: 0.6494 S33: 0.0754 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5BPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.6.0117 REMARK 200 STARTING MODEL: PDB ENTRY 4F4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 68% MPD, 8% PROPYLENE GLYCOL, 0.3 M REMARK 280 SODIUM CHLORIDE, 2 MM MAGNESIUM SULFATE, 50 MM MES, PH 5.5, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.10800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 38.10800 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 244.59500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.10800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.29750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.10800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 366.89250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.10800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 366.89250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.10800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.29750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 38.10800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 38.10800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 244.59500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 38.10800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 38.10800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 244.59500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 38.10800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 366.89250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 38.10800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 122.29750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 38.10800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 122.29750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 38.10800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 366.89250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 38.10800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 38.10800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 244.59500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -416.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 76.21600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -417.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, M, N, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.21600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 VAL A 76 REMARK 465 VAL B 76 REMARK 465 VAL C 76 REMARK 465 GLY D 75 REMARK 465 VAL D 76 REMARK 465 GLY E 75 REMARK 465 VAL E 76 REMARK 465 VAL K 76 REMARK 465 VAL L 76 REMARK 465 VAL M 76 REMARK 465 VAL N 76 REMARK 465 VAL O 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 FME A 1 CG SD CE REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 FME B 1 CG SD CE REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 FME C 1 SD CE REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 LEU C 63 CG CD1 CD2 REMARK 470 FME D 1 CG SD CE REMARK 470 GLN D 2 CG CD OE1 NE2 REMARK 470 FME E 1 SD CE REMARK 470 GLN E 2 CG CD OE1 NE2 REMARK 470 FME K 1 CG SD CE REMARK 470 GLN K 2 CG CD OE1 NE2 REMARK 470 LEU K 5 CG CD1 CD2 REMARK 470 FME L 1 CG SD CE REMARK 470 GLN L 2 CG CD OE1 NE2 REMARK 470 LYS L 8 CG CD CE NZ REMARK 470 LEU L 63 CG CD1 CD2 REMARK 470 FME M 1 CG SD CE REMARK 470 GLN M 2 CG CD OE1 NE2 REMARK 470 PHE M 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN N 2 CD OE1 NE2 REMARK 470 FME O 1 SD CE REMARK 470 GLN O 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 FME A 1 O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 FME L 1 CA - C - N ANGL. DEV. = 15.1 DEGREES REMARK 500 FME L 1 O - C - N ANGL. DEV. = -24.2 DEGREES REMARK 500 GLN L 2 C - N - CA ANGL. DEV. = 18.9 DEGREES REMARK 500 GLN O 2 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE C 74 -50.65 -129.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 FME O 1 GLN O 2 149.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 FME A 1 -16.85 REMARK 500 FME L 1 -25.78 REMARK 500 FME M 1 -14.78 REMARK 500 FME N 1 17.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFO E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFO K 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFO L 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFO M 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFO O 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BQ6 RELATED DB: PDB REMARK 900 RELATED ID: 5BQA RELATED DB: PDB REMARK 900 RELATED ID: 5BQJ RELATED DB: PDB DBREF 5BPS A 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BPS B 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BPS C 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BPS D 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BPS E 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BPS K 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BPS L 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BPS M 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BPS N 2 76 UNP P61829 ATP9_YEAST 2 76 DBREF 5BPS O 2 76 UNP P61829 ATP9_YEAST 2 76 SEQADV 5BPS FME A 1 UNP P61829 INITIATING METHIONINE SEQADV 5BPS FME B 1 UNP P61829 INITIATING METHIONINE SEQADV 5BPS FME C 1 UNP P61829 INITIATING METHIONINE SEQADV 5BPS FME D 1 UNP P61829 INITIATING METHIONINE SEQADV 5BPS FME E 1 UNP P61829 INITIATING METHIONINE SEQADV 5BPS FME K 1 UNP P61829 INITIATING METHIONINE SEQADV 5BPS FME L 1 UNP P61829 INITIATING METHIONINE SEQADV 5BPS FME M 1 UNP P61829 INITIATING METHIONINE SEQADV 5BPS FME N 1 UNP P61829 INITIATING METHIONINE SEQADV 5BPS FME O 1 UNP P61829 INITIATING METHIONINE SEQRES 1 A 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 A 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 A 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 A 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 A 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 A 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 B 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 B 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 B 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 B 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 B 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 B 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 C 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 C 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 C 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 C 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 C 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 C 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 D 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 D 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 D 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 D 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 D 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 D 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 E 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 E 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 E 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 E 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 E 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 E 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 K 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 K 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 K 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 K 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 K 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 K 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 L 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 L 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 L 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 L 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 L 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 L 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 M 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 M 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 M 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 M 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 M 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 M 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 N 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 N 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 N 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 N 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 N 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 N 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 O 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 O 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 O 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 O 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 O 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 O 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL HET FME A 1 7 HET FME B 1 7 HET FME C 1 8 HET FME D 1 7 HET FME E 1 8 HET FME K 1 7 HET FME L 1 7 HET FME M 1 7 HET FME N 1 10 HET FME O 1 8 HET EFO B 101 56 HET EFO B 102 56 HET EFO E 101 56 HET EFO K 101 56 HET EFO L 101 56 HET EFO M 101 56 HET EFO O 101 56 HETNAM FME N-FORMYLMETHIONINE HETNAM EFO OLIGOMYCIN A HETSYN EFO (1R,4E,5'S,6S,6'S,7R,8S,10R,11R,12S,14R,15S,16R,18E, HETSYN 2 EFO 20E,22R,25S,27R,28S,29R)-22-ETHYL-7,11,14,15- HETSYN 3 EFO TETRAHYDROXY-6'-[(2R)-2-HYDROXYPROPYL]-5',6,8,10,12, HETSYN 4 EFO 14,16,28,29-NONAMETHYL-3',4',5',6'-TETRAHYDRO-3H,9H, HETSYN 5 EFO 13H-SPIRO[2,26-DIOXABICYCLO[23.3.1]NONACOSA-4,18,20- HETSYN 6 EFO TRIENE-27,2'-PYRAN]-3,9,13-TRIONE FORMUL 1 FME 10(C6 H11 N O3 S) FORMUL 11 EFO 7(C45 H74 O11) FORMUL 18 HOH *143(H2 O) HELIX 1 AA1 FME A 1 SER A 15 1 15 HELIX 2 AA2 GLY A 18 ASN A 40 1 23 HELIX 3 AA3 ILE A 43 PHE A 74 1 32 HELIX 4 AA4 GLN B 2 SER B 15 1 14 HELIX 5 AA5 GLY B 18 ASN B 40 1 23 HELIX 6 AA6 ILE B 43 GLY B 75 1 33 HELIX 7 AA7 GLN C 2 SER C 15 1 14 HELIX 8 AA8 GLY C 18 ASN C 40 1 23 HELIX 9 AA9 ILE C 43 PHE C 74 1 32 HELIX 10 AB1 GLN D 2 SER D 15 1 14 HELIX 11 AB2 GLY D 18 ASN D 40 1 23 HELIX 12 AB3 ILE D 43 PHE D 74 1 32 HELIX 13 AB4 GLN E 2 SER E 15 1 14 HELIX 14 AB5 GLY E 18 ASN E 40 1 23 HELIX 15 AB6 ILE E 43 PHE E 74 1 32 HELIX 16 AB7 GLN K 2 SER K 15 1 14 HELIX 17 AB8 GLY K 18 ASN K 40 1 23 HELIX 18 AB9 ILE K 43 GLY K 75 1 33 HELIX 19 AC1 GLN L 2 SER L 15 1 14 HELIX 20 AC2 GLY L 18 ASN L 40 1 23 HELIX 21 AC3 ILE L 43 GLY L 75 1 33 HELIX 22 AC4 GLN M 2 SER M 15 1 14 HELIX 23 AC5 GLY M 18 ASN M 40 1 23 HELIX 24 AC6 ILE M 43 GLY M 75 1 33 HELIX 25 AC7 GLN N 2 SER N 15 1 14 HELIX 26 AC8 GLY N 18 ASN N 40 1 23 HELIX 27 AC9 ILE N 43 GLY N 75 1 33 HELIX 28 AD1 GLN O 2 SER O 15 1 14 HELIX 29 AD2 GLY O 18 ASN O 40 1 23 HELIX 30 AD3 ILE O 43 GLY O 75 1 33 LINK C FME A 1 N GLN A 2 1555 1555 1.42 LINK C FME B 1 N GLN B 2 1555 1555 1.42 LINK C FME C 1 N GLN C 2 1555 1555 1.42 LINK C FME D 1 N GLN D 2 1555 1555 1.43 LINK C FME E 1 N GLN E 2 1555 1555 1.42 LINK C FME K 1 N GLN K 2 1555 1555 1.42 LINK C FME L 1 N GLN L 2 1555 1555 1.43 LINK C FME M 1 N GLN M 2 1555 1555 1.42 LINK C FME N 1 N GLN N 2 1555 1555 1.43 LINK C FME O 1 N GLN O 2 1555 1555 1.42 SITE 1 AC1 9 ALA B 56 ALA B 60 PHE B 64 ILE C 52 SITE 2 AC1 9 ALA C 56 GLU C 59 LEU C 63 LEU C 66 SITE 3 AC1 9 HOH C 101 SITE 1 AC2 13 ALA A 56 ALA A 60 PHE A 64 ILE B 52 SITE 2 AC2 13 ALA B 56 GLU B 59 ALA B 60 LEU B 63 SITE 3 AC2 13 HOH B 201 HOH B 209 HOH B 219 EFO K 101 SITE 4 AC2 13 EFO O 101 SITE 1 AC3 8 ALA D 56 ALA D 60 ILE E 52 PHE E 55 SITE 2 AC3 8 ALA E 56 GLU E 59 LEU E 63 HOH E 201 SITE 1 AC4 16 ILE A 52 PHE A 55 ALA A 56 GLU A 59 SITE 2 AC4 16 HOH A 105 EFO B 102 LEU E 53 ILE K 52 SITE 3 AC4 16 ALA K 56 GLU K 59 ALA K 60 LEU K 63 SITE 4 AC4 16 HOH K 202 EFO L 101 ALA O 60 PHE O 64 SITE 1 AC5 10 ALA K 56 LEU K 57 ALA K 60 PHE K 64 SITE 2 AC5 10 EFO K 101 PHE L 55 ALA L 56 GLU L 59 SITE 3 AC5 10 ALA L 60 LEU L 63 SITE 1 AC6 8 LEU C 53 ALA L 56 ALA L 60 PHE M 55 SITE 2 AC6 8 ALA M 56 GLU M 59 LEU M 63 HOH M 201 SITE 1 AC7 10 EFO B 102 HOH B 209 ALA N 56 LEU N 57 SITE 2 AC7 10 ALA N 60 ILE O 52 ALA O 56 GLU O 59 SITE 3 AC7 10 LEU O 63 HOH O 201 CRYST1 76.216 76.216 489.190 90.00 90.00 90.00 I 41 2 2 160 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013121 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002044 0.00000 HETATM 1 N FME A 1 46.991 12.617 64.331 1.00 52.21 N ANISOU 1 N FME A 1 8881 7531 3424 140 -89 -1296 N HETATM 2 CN FME A 1 45.785 12.123 64.004 1.00 50.11 C ANISOU 2 CN FME A 1 8461 7192 3384 645 -13 -1089 C HETATM 3 O1 FME A 1 45.462 11.891 62.842 1.00 47.72 O ANISOU 3 O1 FME A 1 7981 6854 3296 772 4 -995 O HETATM 4 CA FME A 1 47.950 13.108 63.342 1.00 52.69 C ANISOU 4 CA FME A 1 8993 7598 3428 -312 -119 -1432 C HETATM 5 CB FME A 1 49.038 13.897 64.059 1.00 56.97 C ANISOU 5 CB FME A 1 9843 8269 3531 -966 -151 -1670 C HETATM 6 C FME A 1 48.590 12.001 62.554 1.00 49.53 C ANISOU 6 C FME A 1 7909 7608 3301 -312 -309 -1358 C HETATM 7 O FME A 1 48.616 12.075 61.300 1.00 48.88 O ANISOU 7 O FME A 1 7773 7418 3381 -327 -282 -1333 O