HEADER CELL CYCLE 28-MAY-15 5BPT TITLE ATOMIC-RESOLUTION STRUCTURES OF THE APC/C SUBUNITS APC4 AND THE APC5 TITLE 2 N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MGC81278 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APC4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: ANAPC4, MGC81278; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS CELL CYCLE, APC4, APC/C, ANAPHASE PROMOTING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.CRONIN,J.YANG,Z.ZHANG,D.BARFORD REVDAT 3 07-OCT-15 5BPT 1 JRNL REVDAT 2 23-SEP-15 5BPT 1 JRNL REVDAT 1 02-SEP-15 5BPT 0 JRNL AUTH N.B.CRONIN,J.YANG,Z.ZHANG,K.KULKARNI,L.CHANG,H.YAMANO, JRNL AUTH 2 D.BARFORD JRNL TITL ATOMIC-RESOLUTION STRUCTURES OF THE APC/C SUBUNITS APC4 AND JRNL TITL 2 THE APC5 N-TERMINAL DOMAIN. JRNL REF J.MOL.BIOL. V. 427 3300 2015 JRNL REFN ESSN 1089-8638 JRNL PMID 26343760 JRNL DOI 10.1016/J.JMB.2015.08.023 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.590 REMARK 3 FREE R VALUE TEST SET COUNT : 1016 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2767 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2533 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2605 REMARK 3 BIN R VALUE (WORKING SET) : 0.2527 REMARK 3 BIN FREE R VALUE : 0.2625 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 107.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.47690 REMARK 3 B22 (A**2) : 4.47690 REMARK 3 B33 (A**2) : -8.95380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.830 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.451 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4871 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6601 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1707 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 120 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 692 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4871 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 656 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5378 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.28 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.85 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|2 - A|231} REMARK 3 ORIGIN FOR THE GROUP (A): 18.0970 21.6675 10.0612 REMARK 3 T TENSOR REMARK 3 T11: -0.1042 T22: -0.1336 REMARK 3 T33: 0.0067 T12: 0.0328 REMARK 3 T13: 0.3073 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 2.6659 L22: 2.2608 REMARK 3 L33: 1.1056 L12: 0.0748 REMARK 3 L13: 0.3742 L23: -0.1904 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: -0.3450 S13: -0.5798 REMARK 3 S21: 0.5559 S22: -0.0039 S23: 0.4232 REMARK 3 S31: 0.0070 S32: -0.0161 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|232 - A|530} REMARK 3 ORIGIN FOR THE GROUP (A): 38.4243 26.9200 34.2636 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.1349 REMARK 3 T33: -0.2353 T12: 0.1122 REMARK 3 T13: 0.1618 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.8567 L22: 0.8779 REMARK 3 L33: 2.5770 L12: 0.4016 REMARK 3 L13: -0.3932 L23: 0.3793 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.6093 S13: -0.2614 REMARK 3 S21: 0.3945 S22: -0.3311 S23: 0.1285 REMARK 3 S31: -0.1455 S32: -0.2215 S33: 0.3205 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|531 - A|740} REMARK 3 ORIGIN FOR THE GROUP (A): 8.7741 21.8539 -11.2702 REMARK 3 T TENSOR REMARK 3 T11: -0.2895 T22: -0.1357 REMARK 3 T33: 0.1337 T12: -0.0330 REMARK 3 T13: 0.1971 T23: -0.3270 REMARK 3 L TENSOR REMARK 3 L11: 2.7563 L22: 2.6629 REMARK 3 L33: 2.3639 L12: 0.7226 REMARK 3 L13: 0.5298 L23: -0.7054 REMARK 3 S TENSOR REMARK 3 S11: -0.2031 S12: 0.6031 S13: -0.4719 REMARK 3 S21: -0.0393 S22: 0.1033 S23: 0.8446 REMARK 3 S31: 0.3584 S32: -0.1501 S33: 0.0998 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15477 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: APC4 WAS CONCENTRATED TO 3.5 MG/ML IN REMARK 280 A BUFFER OF 20 MM HEPES (PH 8.0), 200 MM NACL AND 2 MM DTT. REMARK 280 INITIAL CRYSTAL WAS OBTAINED BY VAPOUR DIFFUSION IN SETTING DROP REMARK 280 IN A BUFFER CONTAINING 0.1 M SODIUM CITRATE 5.0, 8% (W/V) PEG REMARK 280 8K. BY SEEDING WITH THE INITIAL CRYSTALS, LARGE CRYSTALS WERE REMARK 280 GROWN IN A BUFFER CONTAINING 0.1 M SODIUM CITRATE 5.0, 3% (W/V) REMARK 280 PEG 8K, 250 MM MAGNESIUM ACETATE, 10 MM TRIS.HCL (PH 8.5), 200 REMARK 280 MM NDSB-211, 4% (V/V) ETHYLENE GLYCOL AND 2 MM DTT., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.79650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.89825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.69475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 281 REMARK 465 LYS A 282 REMARK 465 PHE A 283 REMARK 465 VAL A 284 REMARK 465 GLN A 285 REMARK 465 GLU A 286 REMARK 465 LYS A 287 REMARK 465 ASN A 288 REMARK 465 THR A 289 REMARK 465 THR A 290 REMARK 465 THR A 291 REMARK 465 SER A 292 REMARK 465 VAL A 293 REMARK 465 GLN A 294 REMARK 465 ASP A 295 REMARK 465 GLU A 296 REMARK 465 PHE A 297 REMARK 465 MSE A 298 REMARK 465 GLN A 299 REMARK 465 LEU A 300 REMARK 465 LEU A 301 REMARK 465 LEU A 302 REMARK 465 TRP A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 ALA A 306 REMARK 465 SER A 307 REMARK 465 PRO A 308 REMARK 465 ALA A 417 REMARK 465 MSE A 418 REMARK 465 LEU A 419 REMARK 465 ARG A 420 REMARK 465 MSE A 421 REMARK 465 SER A 422 REMARK 465 GLU A 423 REMARK 465 ASP A 424 REMARK 465 HIS A 425 REMARK 465 VAL A 426 REMARK 465 LEU A 427 REMARK 465 PRO A 428 REMARK 465 GLU A 429 REMARK 465 LEU A 430 REMARK 465 ASN A 431 REMARK 465 LYS A 432 REMARK 465 MSE A 433 REMARK 465 THR A 434 REMARK 465 GLN A 435 REMARK 465 LYS A 436 REMARK 465 ASP A 437 REMARK 465 ILE A 438 REMARK 465 THR A 439 REMARK 465 PHE A 440 REMARK 465 VAL A 441 REMARK 465 ALA A 442 REMARK 465 PRO A 453 REMARK 465 ASP A 454 REMARK 465 MSE A 455 REMARK 465 TYR A 456 REMARK 465 ASN A 457 REMARK 465 GLN A 458 REMARK 465 LYS A 459 REMARK 465 GLY A 460 REMARK 465 LYS A 461 REMARK 465 TYR A 462 REMARK 465 PHE A 463 REMARK 465 ASN A 464 REMARK 465 VAL A 465 REMARK 465 GLU A 466 REMARK 465 ARG A 467 REMARK 465 VAL A 468 REMARK 465 GLY A 469 REMARK 465 GLN A 470 REMARK 465 TYR A 471 REMARK 465 LEU A 472 REMARK 465 LYS A 473 REMARK 465 ASP A 474 REMARK 465 GLU A 475 REMARK 465 ASP A 476 REMARK 465 ASP A 477 REMARK 465 ILE A 478 REMARK 465 LEU A 479 REMARK 465 MSE A 480 REMARK 465 SER A 481 REMARK 465 PRO A 482 REMARK 465 PRO A 483 REMARK 465 ASN A 484 REMARK 465 ILE A 485 REMARK 465 GLU A 486 REMARK 465 GLY A 487 REMARK 465 ASN A 488 REMARK 465 GLN A 489 REMARK 465 TRP A 490 REMARK 465 PHE A 491 REMARK 465 SER A 492 REMARK 465 PHE A 493 REMARK 465 LEU A 494 REMARK 465 GLN A 495 REMARK 465 SER A 496 REMARK 465 SER A 497 REMARK 465 THR A 498 REMARK 465 HIS A 499 REMARK 465 LEU A 500 REMARK 465 LYS A 501 REMARK 465 GLU A 502 REMARK 465 SER A 503 REMARK 465 PRO A 504 REMARK 465 LEU A 505 REMARK 465 LEU A 506 REMARK 465 PHE A 507 REMARK 465 PRO A 508 REMARK 465 TYR A 509 REMARK 465 TYR A 510 REMARK 465 ASN A 615 REMARK 465 SER A 616 REMARK 465 LEU A 617 REMARK 465 ASN A 618 REMARK 465 SER A 619 REMARK 465 SER A 620 REMARK 465 ALA A 621 REMARK 465 ALA A 622 REMARK 465 GLU A 623 REMARK 465 ASP A 624 REMARK 465 THR A 625 REMARK 465 GLU A 626 REMARK 465 THR A 627 REMARK 465 ALA A 741 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 12 CG CD1 CD2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 SER A 154 OG REMARK 470 LEU A 273 CG CD1 CD2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 GLN A 398 CG CD OE1 NE2 REMARK 470 TYR A 415 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 416 CG1 CG2 REMARK 470 ASP A 443 CG OD1 OD2 REMARK 470 PHE A 444 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 445 CG CD1 CD2 REMARK 470 THR A 446 OG1 CG2 REMARK 470 GLU A 447 CG CD OE1 OE2 REMARK 470 HIS A 448 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 449 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 450 CG OD1 ND2 REMARK 470 GLU A 451 CG CD OE1 OE2 REMARK 470 ILE A 613 O REMARK 470 SER A 628 OG REMARK 470 GLU A 654 CG CD OE1 OE2 REMARK 470 GLU A 672 CG CD OE1 OE2 REMARK 470 GLU A 673 CG CD OE1 OE2 REMARK 470 ARG A 705 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 50.18 -90.75 REMARK 500 LYS A 33 -12.63 61.06 REMARK 500 ASN A 44 14.29 59.92 REMARK 500 SER A 116 -85.73 35.53 REMARK 500 LYS A 140 96.75 -69.03 REMARK 500 ALA A 146 -41.84 68.15 REMARK 500 GLU A 151 90.22 57.94 REMARK 500 LYS A 153 -112.53 59.59 REMARK 500 TYR A 183 19.82 59.29 REMARK 500 MSE A 185 -15.23 -155.74 REMARK 500 CYS A 198 98.36 -54.67 REMARK 500 ASN A 220 -65.51 -98.23 REMARK 500 TYR A 237 34.31 -99.99 REMARK 500 LEU A 255 -48.84 76.16 REMARK 500 ARG A 366 -56.17 68.97 REMARK 500 TYR A 369 -28.17 76.67 REMARK 500 LEU A 549 -82.63 -90.79 REMARK 500 ASN A 605 -78.00 -69.35 REMARK 500 GLU A 606 74.67 -102.85 REMARK 500 TYR A 630 -92.77 39.96 REMARK 500 TYR A 638 -88.00 -116.97 REMARK 500 GLU A 640 -72.14 5.57 REMARK 500 LEU A 668 -18.10 61.56 REMARK 500 TYR A 669 33.06 37.87 REMARK 500 ARG A 705 -102.23 -72.18 REMARK 500 LYS A 711 79.48 -103.65 REMARK 500 ALA A 712 -94.94 -50.64 REMARK 500 HIS A 713 -25.25 81.38 REMARK 500 ASN A 730 -37.75 67.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 5BPT A 2 737 UNP Q6NU36 Q6NU36_XENLA 2 737 SEQADV 5BPT MSE A 1 UNP Q6NU36 INITIATING METHIONINE SEQADV 5BPT THR A 312 UNP Q6NU36 ALA 312 CONFLICT SEQADV 5BPT GLU A 738 UNP Q6NU36 EXPRESSION TAG SEQADV 5BPT MSE A 739 UNP Q6NU36 EXPRESSION TAG SEQADV 5BPT ASP A 740 UNP Q6NU36 EXPRESSION TAG SEQADV 5BPT ALA A 741 UNP Q6NU36 EXPRESSION TAG SEQRES 1 A 741 MSE PRO PRO PHE ARG GLN VAL GLY GLU LYS GLN LEU PRO SEQRES 2 A 741 HIS GLU ILE ILE PHE LEU ALA TRP SER PRO LYS ARG ASP SEQRES 3 A 741 LEU ILE ALA LEU VAL ASN LYS ALA GLY GLU VAL LEU LEU SEQRES 4 A 741 HIS ARG LEU ALA ASN ILE GLN ARG VAL TRP SER LEU PRO SEQRES 5 A 741 PRO ASN GLU ASN THR GLY LYS GLU VAL THR CYS LEU ALA SEQRES 6 A 741 TRP ARG PRO ASP GLY LYS ILE LEU ALA PHE GLY LEU ALA SEQRES 7 A 741 ASP THR LYS LYS VAL ILE LEU CYS ASP VAL GLU LYS PRO SEQRES 8 A 741 GLU SER LEU HIS SER PHE SER LEU GLU THR PRO ILE SER SEQRES 9 A 741 CYS MSE GLN TRP MSE GLU VAL ASN VAL GLU ASN SER VAL SEQRES 10 A 741 LEU THR SER PHE TYR ASN ALA GLU ASP GLU ALA ASN VAL SEQRES 11 A 741 LEU LEU PRO LYS LEU PRO ALA LEU PRO LYS ASN TYR THR SEQRES 12 A 741 ALA THR ALA LYS ILE PHE SER GLU GLU LYS SER ASP GLU SEQRES 13 A 741 ILE LEU LYS LEU LEU GLY ASP ALA ARG LEU ASN ALA LEU SEQRES 14 A 741 VAL LEU GLY GLY ASP SER GLY GLN ILE GLU ILE TYR ALA SEQRES 15 A 741 TYR GLY MSE TYR LYS ILE ALA THR ILE SER GLU VAL TYR SEQRES 16 A 741 GLY SER CYS LEU ARG LEU CYS LEU SER SER ASP LEU LYS SEQRES 17 A 741 SER LEU SER VAL VAL THR GLU LEU THR THR ASN ASN THR SEQRES 18 A 741 PRO GLU ILE THR TYR PHE GLN LEU ASP THR SER LEU LEU SEQRES 19 A 741 SER ASP TYR LEU PRO GLU VAL THR ARG MSE ALA ARG LYS SEQRES 20 A 741 PHE THR HIS ILE SER THR LEU LEU GLN TYR LEU GLN LEU SEQRES 21 A 741 SER LEU THR CYS MSE CYS GLU ALA TRP GLU GLU ILE LEU SEQRES 22 A 741 MSE GLN MSE ASP SER ARG LEU THR LYS PHE VAL GLN GLU SEQRES 23 A 741 LYS ASN THR THR THR SER VAL GLN ASP GLU PHE MSE GLN SEQRES 24 A 741 LEU LEU LEU TRP GLY LYS ALA SER PRO GLU LEU GLN THR SEQRES 25 A 741 LEU LEU MSE ASN GLN LEU THR VAL LYS GLY LEU LYS LYS SEQRES 26 A 741 LEU GLY GLN SER VAL GLU SER SER TYR SER THR ILE GLN SEQRES 27 A 741 LYS LEU VAL ILE SER HIS LEU GLN SER GLY ALA GLU ALA SEQRES 28 A 741 LEU LEU TYR HIS LEU SER GLU LEU LYS GLY MSE ALA LEU SEQRES 29 A 741 TRP ARG GLN LYS TYR GLU PRO LEU GLY LEU ASP ALA LYS SEQRES 30 A 741 ALA ILE GLU ASP ALA ILE THR ALA VAL GLY SER PHE ILE SEQRES 31 A 741 LEU LYS ALA HIS GLU LEU LEU GLN VAL ILE ASP SER GLY SEQRES 32 A 741 MSE LYS ASN PHE LYS ALA PHE PHE ARG TRP LEU TYR VAL SEQRES 33 A 741 ALA MSE LEU ARG MSE SER GLU ASP HIS VAL LEU PRO GLU SEQRES 34 A 741 LEU ASN LYS MSE THR GLN LYS ASP ILE THR PHE VAL ALA SEQRES 35 A 741 ASP PHE LEU THR GLU HIS PHE ASN GLU ALA PRO ASP MSE SEQRES 36 A 741 TYR ASN GLN LYS GLY LYS TYR PHE ASN VAL GLU ARG VAL SEQRES 37 A 741 GLY GLN TYR LEU LYS ASP GLU ASP ASP ILE LEU MSE SER SEQRES 38 A 741 PRO PRO ASN ILE GLU GLY ASN GLN TRP PHE SER PHE LEU SEQRES 39 A 741 GLN SER SER THR HIS LEU LYS GLU SER PRO LEU LEU PHE SEQRES 40 A 741 PRO TYR TYR PRO GLU LYS SER LEU HIS PHE VAL LYS ARG SEQRES 41 A 741 GLN MSE GLU ALA ILE ILE ASP ARG CYS LEU THR LYS PRO SEQRES 42 A 741 ALA GLN ILE ILE GLY ALA SER VAL GLN GLN LYS ARG CYS SEQRES 43 A 741 LEU PRO LEU TYR GLN VAL SER ALA SER GLU GLU ALA CYS SEQRES 44 A 741 PRO ARG LEU ILE SER LEU PRO TYR LEU TRP ASN ASP LYS SEQRES 45 A 741 SER GLN ASN LEU HIS CYS VAL MSE PHE ARG MSE LEU GLU SEQRES 46 A 741 SER SER SER SER LYS VAL PHE ILE LEU ARG GLN PRO THR SEQRES 47 A 741 ASP LEU SER ARG SER ILE ASN GLU ALA LEU LEU ALA VAL SEQRES 48 A 741 THR ILE GLY ASN SER LEU ASN SER SER ALA ALA GLU ASP SEQRES 49 A 741 THR GLU THR SER SER TYR SER CYS LEU ASP ALA ARG PHE SEQRES 50 A 741 TYR ASP GLU ASP ILE ILE THR VAL VAL LEU ARG ASP ASN SEQRES 51 A 741 SER GLU PRO GLU GLY LYS ASP ARG VAL LEU SER GLN LEU SEQRES 52 A 741 SER LEU SER GLN LEU TYR SER ASP GLU GLU THR GLU ASP SEQRES 53 A 741 GLU PHE THR TRP ASP THR SER LYS ARG LEU GLU GLU GLN SEQRES 54 A 741 HIS SER ASP ILE PRO THR ARG THR VAL PHE LEU GLU ASN SEQRES 55 A 741 GLN GLY ARG LEU LEU GLU ASN MSE LYS ALA HIS TYR VAL SEQRES 56 A 741 SER VAL ASN GLY ILE ARG LYS VAL ALA CYS VAL LEU SER SEQRES 57 A 741 SER ASN LEU ARG HIS VAL ARG VAL PHE GLU MSE ASP ALA MODRES 5BPT MSE A 106 MET MODIFIED RESIDUE MODRES 5BPT MSE A 109 MET MODIFIED RESIDUE MODRES 5BPT MSE A 185 MET MODIFIED RESIDUE MODRES 5BPT MSE A 244 MET MODIFIED RESIDUE MODRES 5BPT MSE A 265 MET MODIFIED RESIDUE MODRES 5BPT MSE A 274 MET MODIFIED RESIDUE MODRES 5BPT MSE A 276 MET MODIFIED RESIDUE MODRES 5BPT MSE A 315 MET MODIFIED RESIDUE MODRES 5BPT MSE A 362 MET MODIFIED RESIDUE MODRES 5BPT MSE A 404 MET MODIFIED RESIDUE MODRES 5BPT MSE A 522 MET MODIFIED RESIDUE MODRES 5BPT MSE A 580 MET MODIFIED RESIDUE MODRES 5BPT MSE A 583 MET MODIFIED RESIDUE MODRES 5BPT MSE A 710 MET MODIFIED RESIDUE HET MSE A 106 8 HET MSE A 109 8 HET MSE A 185 8 HET MSE A 244 8 HET MSE A 265 8 HET MSE A 274 8 HET MSE A 276 8 HET MSE A 315 8 HET MSE A 362 8 HET MSE A 404 8 HET MSE A 522 8 HET MSE A 580 8 HET MSE A 583 8 HET MSE A 710 8 HET MSE A 739 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 15(C5 H11 N O2 SE) HELIX 1 AA1 ALA A 43 ILE A 45 5 3 HELIX 2 AA2 ASN A 54 GLY A 58 5 5 HELIX 3 AA3 SER A 116 LEU A 132 1 17 HELIX 4 AA4 GLU A 156 LEU A 161 1 6 HELIX 5 AA5 THR A 231 TYR A 237 1 7 HELIX 6 AA6 TYR A 237 LEU A 254 1 18 HELIX 7 AA7 LEU A 255 LEU A 280 1 26 HELIX 8 AA8 LEU A 310 LEU A 318 1 9 HELIX 9 AA9 THR A 319 SER A 343 1 25 HELIX 10 AB1 SER A 343 LEU A 364 1 22 HELIX 11 AB2 ASP A 375 VAL A 416 1 42 HELIX 12 AB3 PHE A 444 ALA A 452 1 9 HELIX 13 AB4 SER A 514 VAL A 541 1 28 HELIX 14 AB5 LEU A 663 LEU A 668 1 6 HELIX 15 AB6 ARG A 685 HIS A 690 5 6 SHEET 1 AA1 4 ARG A 5 GLN A 11 0 SHEET 2 AA1 4 HIS A 733 GLU A 738 -1 O GLU A 738 N ARG A 5 SHEET 3 AA1 4 VAL A 723 LEU A 727 -1 N VAL A 726 O ARG A 735 SHEET 4 AA1 4 TYR A 714 ASN A 718 -1 N SER A 716 O CYS A 725 SHEET 1 AA2 4 PHE A 18 TRP A 21 0 SHEET 2 AA2 4 LEU A 27 VAL A 31 -1 O ALA A 29 N ALA A 20 SHEET 3 AA2 4 VAL A 37 ARG A 41 -1 O HIS A 40 N ILE A 28 SHEET 4 AA2 4 ARG A 47 LEU A 51 -1 O VAL A 48 N LEU A 39 SHEET 1 AA3 4 VAL A 61 TRP A 66 0 SHEET 2 AA3 4 ILE A 72 LEU A 77 -1 O ALA A 74 N ALA A 65 SHEET 3 AA3 4 LYS A 82 ASP A 87 -1 O CYS A 86 N LEU A 73 SHEET 4 AA3 4 SER A 93 SER A 98 -1 O HIS A 95 N LEU A 85 SHEET 1 AA4 4 ILE A 103 GLU A 110 0 SHEET 2 AA4 4 ASN A 167 GLY A 173 -1 O VAL A 170 N GLN A 107 SHEET 3 AA4 4 ILE A 178 ALA A 182 -1 O GLU A 179 N LEU A 171 SHEET 4 AA4 4 TYR A 186 ILE A 191 -1 O ILE A 191 N ILE A 178 SHEET 1 AA5 4 SER A 197 LEU A 203 0 SHEET 2 AA5 4 LEU A 210 LEU A 216 -1 O GLU A 215 N SER A 197 SHEET 3 AA5 4 GLU A 223 ASP A 230 -1 O THR A 225 N THR A 214 SHEET 4 AA5 4 GLN A 542 GLN A 551 -1 O LEU A 547 N TYR A 226 SHEET 1 AA6 5 TYR A 567 TRP A 569 0 SHEET 2 AA6 5 LEU A 576 PHE A 581 -1 O CYS A 578 N TRP A 569 SHEET 3 AA6 5 VAL A 591 PRO A 597 -1 O PHE A 592 N PHE A 581 SHEET 4 AA6 5 LEU A 608 THR A 612 -1 O LEU A 609 N ILE A 593 SHEET 5 AA6 5 THR A 695 THR A 697 1 O ARG A 696 N THR A 612 SHEET 1 AA7 4 SER A 631 ASP A 639 0 SHEET 2 AA7 4 ILE A 642 ARG A 648 -1 O VAL A 646 N ASP A 634 SHEET 3 AA7 4 LYS A 656 GLN A 662 -1 O SER A 661 N ILE A 643 SHEET 4 AA7 4 LEU A 706 LEU A 707 -1 O LEU A 706 N ARG A 658 LINK C CYS A 105 N MSE A 106 1555 1555 1.35 LINK C MSE A 106 N GLN A 107 1555 1555 1.34 LINK C TRP A 108 N MSE A 109 1555 1555 1.34 LINK C MSE A 109 N GLU A 110 1555 1555 1.35 LINK C GLY A 184 N MSE A 185 1555 1555 1.36 LINK C MSE A 185 N TYR A 186 1555 1555 1.35 LINK C ARG A 243 N MSE A 244 1555 1555 1.35 LINK C MSE A 244 N ALA A 245 1555 1555 1.35 LINK C CYS A 264 N MSE A 265 1555 1555 1.34 LINK C MSE A 265 N CYS A 266 1555 1555 1.35 LINK C LEU A 273 N MSE A 274 1555 1555 1.35 LINK C MSE A 274 N GLN A 275 1555 1555 1.35 LINK C GLN A 275 N MSE A 276 1555 1555 1.35 LINK C MSE A 276 N ASP A 277 1555 1555 1.35 LINK C LEU A 314 N MSE A 315 1555 1555 1.35 LINK C MSE A 315 N ASN A 316 1555 1555 1.35 LINK C GLY A 361 N MSE A 362 1555 1555 1.35 LINK C MSE A 362 N ALA A 363 1555 1555 1.36 LINK C GLY A 403 N MSE A 404 1555 1555 1.35 LINK C MSE A 404 N LYS A 405 1555 1555 1.35 LINK C GLN A 521 N MSE A 522 1555 1555 1.35 LINK C MSE A 522 N GLU A 523 1555 1555 1.35 LINK C VAL A 579 N MSE A 580 1555 1555 1.34 LINK C MSE A 580 N PHE A 581 1555 1555 1.33 LINK C ARG A 582 N MSE A 583 1555 1555 1.34 LINK C MSE A 583 N LEU A 584 1555 1555 1.35 LINK C ASN A 709 N MSE A 710 1555 1555 1.35 LINK C MSE A 710 N LYS A 711 1555 1555 1.35 LINK C GLU A 738 N MSE A 739 1555 1555 1.34 LINK C MSE A 739 N ASP A 740 1555 1555 1.35 CISPEP 1 LEU A 565 PRO A 566 0 5.93 CRYST1 90.469 90.469 115.593 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008651 0.00000