HEADER SIGNALING PROTEIN 28-MAY-15 5BQC TITLE CRYSTAL STRUCTURE OF NORRIN IN COMPLEX WITH THE CYSTEINE-RICH DOMAIN TITLE 2 OF FRIZZLED 4 AND SUCROSE OCTASULFATE CAVEAT 5BQC NAG B 202 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIZZLED-4; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: RESIDUES 42-179; COMPND 5 SYNONYM: HFZ4,FZE4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NORRIN; COMPND 9 CHAIN: A; COMPND 10 FRAGMENT: RESIDUES 25-133; COMPND 11 SYNONYM: NORRIE DISEASE PROTEIN,X-LINKED EXUDATIVE VITREORETINOPATHY COMPND 12 2 PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FZD4; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHLSEC-MVENUS-12H; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: NDP, EVR2; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 21 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-11268; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PHLIGK-STR-8H-SUMO-1D4 KEYWDS WNT SIGNALLING PATHWAY, NORRIE DISEASE PROTEIN, GLYCOPROTEIN, G KEYWDS 2 PROTEIN COUPLED RECEPTOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.-H.CHANG,F.-L.HSIEH,M.ZEBISCH,K.HARLOS,E.Y.JONES REVDAT 6 10-JAN-24 5BQC 1 HETSYN REVDAT 5 29-JUL-20 5BQC 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL SSBOND LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 13-SEP-17 5BQC 1 REMARK REVDAT 3 29-JUL-15 5BQC 1 JRNL REVDAT 2 22-JUL-15 5BQC 1 JRNL REVDAT 1 01-JUL-15 5BQC 0 JRNL AUTH T.H.CHANG,F.L.HSIEH,M.ZEBISCH,K.HARLOS,J.ELEGHEERT,E.Y.JONES JRNL TITL STRUCTURE AND FUNCTIONAL PROPERTIES OF NORRIN MIMIC WNT FOR JRNL TITL 2 SIGNALLING WITH FRIZZLED4, LRP5/6, AND PROTEOGLYCAN. JRNL REF ELIFE V. 4 06554 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26158506 JRNL DOI 10.7554/ELIFE.06554 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 571 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.4500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.00000 REMARK 3 B22 (A**2) : -3.00000 REMARK 3 B33 (A**2) : 9.74000 REMARK 3 B12 (A**2) : -1.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.380 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1894 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1720 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2577 ; 1.181 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3984 ; 0.935 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2026 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 416 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 894 ; 5.283 ; 7.828 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 893 ; 5.280 ; 7.826 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1114 ; 7.397 ;11.722 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3612 ; 1.080 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 2 ;39.748 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3562 ;22.406 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7070 -35.2290 -8.1740 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.3001 REMARK 3 T33: 0.0495 T12: 0.0824 REMARK 3 T13: -0.0293 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 4.7769 L22: 7.8459 REMARK 3 L33: 5.9265 L12: -0.8636 REMARK 3 L13: 0.9652 L23: -3.7766 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: 0.4308 S13: 0.3069 REMARK 3 S21: -0.4207 S22: -0.0682 S23: 0.2580 REMARK 3 S31: -0.0720 S32: -0.0085 S33: -0.0602 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8240 -48.9450 10.4400 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.4622 REMARK 3 T33: 0.1049 T12: 0.1477 REMARK 3 T13: 0.0167 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 3.2197 L22: 0.9183 REMARK 3 L33: 5.8745 L12: -1.4125 REMARK 3 L13: -3.6888 L23: 2.0723 REMARK 3 S TENSOR REMARK 3 S11: -0.2074 S12: 0.3353 S13: -0.1555 REMARK 3 S21: 0.2317 S22: 0.1013 S23: 0.1484 REMARK 3 S31: 0.4087 S32: -0.2956 S33: 0.1061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10503 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.60 REMARK 200 R MERGE FOR SHELL (I) : 2.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5BPB,5BPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.0, 0.15 M NACL, 8% REMARK 280 PEG8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.71700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.43400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.57550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 99.29250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.85850 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.71700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 79.43400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 99.29250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.57550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.85850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.71700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 39 REMARK 465 THR B 40 REMARK 465 GLY B 41 REMARK 465 GLU B 42 REMARK 465 VAL B 167 REMARK 465 PRO B 168 REMARK 465 LEU B 169 REMARK 465 PRO B 170 REMARK 465 HIS B 171 REMARK 465 LYS B 172 REMARK 465 THR B 173 REMARK 465 PRO B 174 REMARK 465 ILE B 175 REMARK 465 GLN B 176 REMARK 465 PRO B 177 REMARK 465 GLY B 178 REMARK 465 GLU B 179 REMARK 465 GLY B 180 REMARK 465 THR B 181 REMARK 465 LEU B 182 REMARK 465 GLU B 183 REMARK 465 VAL B 184 REMARK 465 LEU B 185 REMARK 465 PHE B 186 REMARK 465 GLN B 187 REMARK 465 GLY A 22 REMARK 465 PRO A 23 REMARK 465 GLY A 24 REMARK 465 LYS A 25 REMARK 465 THR A 26 REMARK 465 ASP A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 PHE A 30 REMARK 465 ILE A 31 REMARK 465 MET A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 134 REMARK 465 THR A 135 REMARK 465 GLU A 136 REMARK 465 THR A 137 REMARK 465 SER A 138 REMARK 465 GLN A 139 REMARK 465 VAL A 140 REMARK 465 ALA A 141 REMARK 465 PRO A 142 REMARK 465 ALA A 143 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 152 O CYS B 158 1.49 REMARK 500 OD1 ASP B 153 N HIS B 156 1.87 REMARK 500 N LEU A 108 O LEU A 116 1.96 REMARK 500 OE1 GLN A 71 ND1 HIS A 94 1.97 REMARK 500 OD1 ASN B 152 N CYS B 158 2.00 REMARK 500 OD1 ASN B 144 OG SER B 146 2.06 REMARK 500 O LEU B 132 O GLU B 134 2.10 REMARK 500 NH1 ARG B 44 O ILE B 110 2.14 REMARK 500 O LEU B 77 OG1 THR B 80 2.18 REMARK 500 OE2 GLU B 141 ND2 ASN B 144 2.18 REMARK 500 O LEU A 108 N LEU A 116 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 107 O6 YYJ C 2 10444 1.75 REMARK 500 NH1 ARG A 107 C5 YYJ C 2 10444 1.97 REMARK 500 SG CYS A 131 SG CYS A 131 7555 2.00 REMARK 500 NH2 ARG A 115 O3S4 YYJ C 2 10444 2.05 REMARK 500 CZ ARG A 107 C6 YYJ C 2 10444 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 45 -177.38 -68.59 REMARK 500 PHE B 135 16.90 58.52 REMARK 500 LEU A 85 -73.64 -100.33 REMARK 500 LYS A 86 -129.28 49.52 REMARK 500 CYS A 93 124.72 -172.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 59 VAL B 60 -143.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BPU RELATED DB: PDB REMARK 900 HUMAN NORRIN STRUCTURE CRYSTAL FORM I REMARK 900 RELATED ID: 5BQ8 RELATED DB: PDB REMARK 900 HUMAN NORRIN STRUCTURE CRYSTAL FORM II REMARK 900 RELATED ID: 5BQB RELATED DB: PDB REMARK 900 HUMAN NORRIN STRUCTURE CRYSTAL FORM III REMARK 900 RELATED ID: 5BPB RELATED DB: PDB REMARK 900 HUMAN FRIZZLED 4 CYSTEINE-RICH DOMAIN CRYSTAL FORM I REMARK 900 RELATED ID: 5BPQ RELATED DB: PDB REMARK 900 HUMAN FRIZZLED 4 CYSTEINE-RICH DOMAIN CRYSTAL FORM II DBREF 5BQC B 42 179 UNP Q9ULV1 FZD4_HUMAN 42 179 DBREF 5BQC A 25 133 UNP Q00604 NDP_HUMAN 25 133 SEQADV 5BQC ASP B 39 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC THR B 40 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC GLY B 41 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC GLY B 180 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC THR B 181 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC LEU B 182 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC GLU B 183 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC VAL B 184 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC LEU B 185 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC PHE B 186 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC GLN B 187 UNP Q9ULV1 EXPRESSION TAG SEQADV 5BQC GLY A 22 UNP Q00604 EXPRESSION TAG SEQADV 5BQC PRO A 23 UNP Q00604 EXPRESSION TAG SEQADV 5BQC GLY A 24 UNP Q00604 EXPRESSION TAG SEQADV 5BQC GLY A 134 UNP Q00604 EXPRESSION TAG SEQADV 5BQC THR A 135 UNP Q00604 EXPRESSION TAG SEQADV 5BQC GLU A 136 UNP Q00604 EXPRESSION TAG SEQADV 5BQC THR A 137 UNP Q00604 EXPRESSION TAG SEQADV 5BQC SER A 138 UNP Q00604 EXPRESSION TAG SEQADV 5BQC GLN A 139 UNP Q00604 EXPRESSION TAG SEQADV 5BQC VAL A 140 UNP Q00604 EXPRESSION TAG SEQADV 5BQC ALA A 141 UNP Q00604 EXPRESSION TAG SEQADV 5BQC PRO A 142 UNP Q00604 EXPRESSION TAG SEQADV 5BQC ALA A 143 UNP Q00604 EXPRESSION TAG SEQRES 1 B 149 ASP THR GLY GLU ARG ARG CYS ASP PRO ILE ARG ILE SER SEQRES 2 B 149 MET CYS GLN ASN LEU GLY TYR ASN VAL THR LYS MET PRO SEQRES 3 B 149 ASN LEU VAL GLY HIS GLU LEU GLN THR ASP ALA GLU LEU SEQRES 4 B 149 GLN LEU THR THR PHE THR PRO LEU ILE GLN TYR GLY CYS SEQRES 5 B 149 SER SER GLN LEU GLN PHE PHE LEU CYS SER VAL TYR VAL SEQRES 6 B 149 PRO MET CYS THR GLU LYS ILE ASN ILE PRO ILE GLY PRO SEQRES 7 B 149 CYS GLY GLY MET CYS LEU SER VAL LYS ARG ARG CYS GLU SEQRES 8 B 149 PRO VAL LEU LYS GLU PHE GLY PHE ALA TRP PRO GLU SER SEQRES 9 B 149 LEU ASN CYS SER LYS PHE PRO PRO GLN ASN ASP HIS ASN SEQRES 10 B 149 HIS MET CYS MET GLU GLY PRO GLY ASP GLU GLU VAL PRO SEQRES 11 B 149 LEU PRO HIS LYS THR PRO ILE GLN PRO GLY GLU GLY THR SEQRES 12 B 149 LEU GLU VAL LEU PHE GLN SEQRES 1 A 122 GLY PRO GLY LYS THR ASP SER SER PHE ILE MET ASP SER SEQRES 2 A 122 ASP PRO ARG ARG CYS MET ARG HIS HIS TYR VAL ASP SER SEQRES 3 A 122 ILE SER HIS PRO LEU TYR LYS CYS SER SER LYS MET VAL SEQRES 4 A 122 LEU LEU ALA ARG CYS GLU GLY HIS CYS SER GLN ALA SER SEQRES 5 A 122 ARG SER GLU PRO LEU VAL SER PHE SER THR VAL LEU LYS SEQRES 6 A 122 GLN PRO PHE ARG SER SER CYS HIS CYS CYS ARG PRO GLN SEQRES 7 A 122 THR SER LYS LEU LYS ALA LEU ARG LEU ARG CYS SER GLY SEQRES 8 A 122 GLY MET ARG LEU THR ALA THR TYR ARG TYR ILE LEU SER SEQRES 9 A 122 CYS HIS CYS GLU GLU CYS ASN SER GLY THR GLU THR SER SEQRES 10 A 122 GLN VAL ALA PRO ALA HET GU4 C 1 27 HET YYJ C 2 28 HET NAG B 201 14 HET NAG B 202 14 HETNAM GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE HETNAM YYJ 1,3,4,6-TETRA-O-SULFO-BETA-D-FRUCTOFURANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOSE; 2,3,4,6- HETSYN 2 GU4 TETRA-O-SULFONATO-D-GLUCOSE; 2,3,4,6-TETRA-O- HETSYN 3 GU4 SULFONATO-GLUCOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 GU4 C6 H12 O18 S4 FORMUL 3 YYJ C6 H12 O18 S4 FORMUL 4 NAG 2(C8 H15 N O6) HELIX 1 AA1 LEU B 71 GLY B 89 1 19 HELIX 2 AA2 GLN B 93 VAL B 103 1 11 HELIX 3 AA3 CYS B 117 GLU B 134 1 18 HELIX 4 AA4 PHE B 135 PHE B 137 5 3 HELIX 5 AA5 PRO B 140 ASN B 144 5 5 SHEET 1 AA1 2 ASP B 46 PRO B 47 0 SHEET 2 AA1 2 VAL B 60 THR B 61 -1 O THR B 61 N ASP B 46 SHEET 1 AA2 2 GLY B 115 PRO B 116 0 SHEET 2 AA2 2 CYS B 158 MET B 159 1 O MET B 159 N GLY B 115 SHEET 1 AA3 2 MET A 40 ILE A 48 0 SHEET 2 AA3 2 LYS A 58 GLU A 66 -1 O ARG A 64 N HIS A 42 SHEET 1 AA4 2 ARG A 74 PRO A 77 0 SHEET 2 AA4 2 PHE A 89 SER A 92 -1 O SER A 92 N ARG A 74 SHEET 1 AA5 2 HIS A 94 ARG A 109 0 SHEET 2 AA5 2 ARG A 115 GLU A 130 -1 O LEU A 116 N LEU A 108 SSBOND 1 CYS B 45 CYS B 106 1555 1555 2.03 SSBOND 2 CYS B 53 CYS B 99 1555 1555 2.03 SSBOND 3 CYS B 90 CYS B 128 1555 1555 2.03 SSBOND 4 CYS B 117 CYS B 158 1555 1555 2.03 SSBOND 5 CYS B 121 CYS B 145 1555 1555 2.03 SSBOND 6 CYS A 39 CYS A 96 1555 1555 2.01 SSBOND 7 CYS A 55 CYS A 110 1555 1555 2.03 SSBOND 8 CYS A 65 CYS A 126 1555 1555 2.04 SSBOND 9 CYS A 69 CYS A 128 1555 1555 2.01 SSBOND 10 CYS A 93 CYS A 95 1555 7555 2.00 LINK ND2 ASN B 59 C1 NAG B 202 1555 1555 1.45 LINK ND2 ASN B 144 C1 NAG B 201 1555 1555 1.44 LINK NE2 HIS B 154 O29 GU4 C 1 1555 10444 1.46 LINK NH1 ARG A 107 C6 YYJ C 2 1555 10444 1.29 LINK C1 GU4 C 1 O2 YYJ C 2 1555 1555 1.37 CISPEP 1 MET B 63 PRO B 64 0 7.58 CRYST1 119.136 119.136 119.151 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008394 0.004846 0.000000 0.00000 SCALE2 0.000000 0.009692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008393 0.00000