HEADER HYDROLASE 29-MAY-15 5BQN TITLE CRYSTAL STRUCTURE OF THE LHN FRAGMENT OF BOTULINUM NEUROTOXIN TYPE D, TITLE 2 MUTANT H233Y E230Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN TYPE D,BOTULINUM NEUROTOXIN TYPE D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BONT/D,BONTOXILYSIN-D,BONT/D,BONTOXILYSIN-D; COMPND 5 EC: 3.4.24.69,3.4.24.69; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: ENGINEERED FRAGMENT OF THE BOTULINUM NEUROTOXIN TYPE D COMPND 9 WITH INACTIVE CATALYTIC DOMAIN AND TRANSLOCATION DOMAIN. AN COMPND 10 ENGINEERED LINKER REGION IS PRESENT BETWEEN THE TWO DOMAINS. RESIDUES COMPND 11 442-457, 494-510, 872-884 WERE DISORDERED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 GENE: BOTD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BOTULINUM NEUROTOXIN, TARGETED SECRETION INHIBITORS, ENDOPEPTIDASE, KEYWDS 2 TYPE D, PROTEIN ENGINEERING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MASUYER,J.R.DAVIES,K.MOORE,J.A.CHADDOCK,K.R.ACHARYA REVDAT 3 10-JAN-24 5BQN 1 REMARK REVDAT 2 09-SEP-15 5BQN 1 JRNL REVDAT 1 19-AUG-15 5BQN 0 JRNL AUTH G.MASUYER,J.R.DAVIES,K.MOORE,J.A.CHADDOCK,K.RAVI ACHARYA JRNL TITL STRUCTURAL ANALYSIS OF CLOSTRIDIUM BOTULINUM NEUROTOXIN TYPE JRNL TITL 2 D AS A PLATFORM FOR THE DEVELOPMENT OF TARGETED SECRETION JRNL TITL 3 INHIBITORS. JRNL REF SCI REP V. 5 13397 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26324071 JRNL DOI 10.1038/SREP13397 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 150.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 82020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 316 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6690 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.239 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6873 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6437 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9341 ; 1.517 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14835 ; 0.975 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 839 ; 7.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 327 ;38.750 ;25.505 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1179 ;15.657 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.634 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1058 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7800 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1568 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3356 ; 2.602 ; 5.756 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3355 ; 2.593 ; 5.755 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4192 ; 4.340 ; 8.621 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4193 ; 4.339 ; 8.623 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3517 ; 2.666 ; 5.891 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3517 ; 2.665 ; 5.891 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5149 ; 4.513 ; 8.744 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7657 ; 7.199 ;44.453 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7619 ; 7.185 ;44.456 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 871 REMARK 3 ORIGIN FOR THE GROUP (A): 155.9250 -71.2073 13.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.2936 REMARK 3 T33: 0.0668 T12: 0.0024 REMARK 3 T13: 0.0387 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.5321 L22: 0.0105 REMARK 3 L33: 0.8972 L12: -0.0494 REMARK 3 L13: -0.6803 L23: 0.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.0615 S12: 0.0754 S13: -0.0417 REMARK 3 S21: 0.0238 S22: -0.0095 S23: 0.0057 REMARK 3 S31: 0.0548 S32: -0.0836 S33: 0.0709 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 150.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 1.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % V/V PENTAERYTHRITOL ETHOXYLATE REMARK 280 (15/4 EO/OH), 0.1 M HEPES 7.5, 6 % W/V POLYVINYLPYRROLIDONE, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.1K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.06367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.12733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.06367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 148.12733 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.06367 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 148.12733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.06367 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 148.12733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 442 REMARK 465 GLU A 443 REMARK 465 LYS A 444 REMARK 465 LEU A 445 REMARK 465 TYR A 446 REMARK 465 ASP A 447 REMARK 465 ASP A 448 REMARK 465 ASP A 449 REMARK 465 ASP A 450 REMARK 465 LYS A 451 REMARK 465 ASP A 452 REMARK 465 ARG A 453 REMARK 465 TRP A 454 REMARK 465 GLY A 455 REMARK 465 SER A 456 REMARK 465 SER A 457 REMARK 465 GLN A 494 REMARK 465 ASN A 495 REMARK 465 TYR A 496 REMARK 465 SER A 497 REMARK 465 ASP A 498 REMARK 465 LYS A 499 REMARK 465 PHE A 500 REMARK 465 SER A 501 REMARK 465 LEU A 502 REMARK 465 ASP A 503 REMARK 465 GLU A 504 REMARK 465 SER A 505 REMARK 465 ILE A 506 REMARK 465 LEU A 507 REMARK 465 ASP A 508 REMARK 465 GLY A 509 REMARK 465 GLN A 510 REMARK 465 ASN A 872 REMARK 465 LEU A 873 REMARK 465 GLU A 874 REMARK 465 ALA A 875 REMARK 465 HIS A 876 REMARK 465 HIS A 877 REMARK 465 HIS A 878 REMARK 465 HIS A 879 REMARK 465 HIS A 880 REMARK 465 HIS A 881 REMARK 465 HIS A 882 REMARK 465 HIS A 883 REMARK 465 HIS A 884 REMARK 465 HIS A 885 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 VAL A 493 CG1 CG2 REMARK 470 VAL A 511 CG1 CG2 REMARK 470 ASN A 514 CG OD1 ND2 REMARK 470 ASN A 563 CG OD1 ND2 REMARK 470 ILE A 584 CD1 REMARK 470 LYS A 627 CG CD CE NZ REMARK 470 ILE A 635 CD1 REMARK 470 ARG A 650 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 655 CG CD OE1 NE2 REMARK 470 SER A 684 OG REMARK 470 SER A 685 OG REMARK 470 ILE A 686 CG1 CG2 CD1 REMARK 470 GLN A 687 CG CD OE1 NE2 REMARK 470 GLU A 688 CG CD OE1 OE2 REMARK 470 ARG A 689 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 690 CG CD OE1 OE2 REMARK 470 LYS A 691 CG CD CE NZ REMARK 470 ILE A 693 CG1 CG2 CD1 REMARK 470 ILE A 806 CD1 REMARK 470 LEU A 831 CG CD1 CD2 REMARK 470 ARG A 837 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 841 CG CD CE NZ REMARK 470 LYS A 864 CE NZ REMARK 470 TYR A 870 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 871 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 100 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -80.17 -141.05 REMARK 500 ASN A 98 0.25 -67.07 REMARK 500 THR A 153 73.71 -117.13 REMARK 500 TRP A 315 20.85 -73.98 REMARK 500 ARG A 372 126.61 -35.85 REMARK 500 ASN A 407 -175.83 -170.25 REMARK 500 ASP A 439 -103.62 81.36 REMARK 500 ILE A 477 -72.87 -78.73 REMARK 500 SER A 478 138.17 -172.25 REMARK 500 ASN A 564 72.49 55.84 REMARK 500 GLU A 566 -98.00 -109.86 REMARK 500 LYS A 627 175.51 71.09 REMARK 500 SER A 632 -71.87 -55.42 REMARK 500 LEU A 649 -67.74 73.47 REMARK 500 GLU A 671 131.30 -32.08 REMARK 500 SER A 685 -95.58 -83.98 REMARK 500 ARG A 689 151.02 97.63 REMARK 500 LYS A 691 32.13 -84.44 REMARK 500 HIS A 827 53.20 -102.57 REMARK 500 LEU A 831 -67.68 70.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 691 ILE A 692 143.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 901 DBREF 5BQN A 1 437 UNP P19321 BXD_CLOBO 1 437 DBREF 5BQN A 460 872 UNP P19321 BXD_CLOBO 450 862 SEQADV 5BQN GLN A 230 UNP P19321 GLU 230 CONFLICT SEQADV 5BQN TYR A 233 UNP P19321 HIS 233 CONFLICT SEQADV 5BQN VAL A 438 UNP P19321 LINKER SEQADV 5BQN ASP A 439 UNP P19321 LINKER SEQADV 5BQN LYS A 440 UNP P19321 LINKER SEQADV 5BQN SER A 441 UNP P19321 LINKER SEQADV 5BQN GLU A 442 UNP P19321 LINKER SEQADV 5BQN GLU A 443 UNP P19321 LINKER SEQADV 5BQN LYS A 444 UNP P19321 LINKER SEQADV 5BQN LEU A 445 UNP P19321 LINKER SEQADV 5BQN TYR A 446 UNP P19321 LINKER SEQADV 5BQN ASP A 447 UNP P19321 LINKER SEQADV 5BQN ASP A 448 UNP P19321 LINKER SEQADV 5BQN ASP A 449 UNP P19321 LINKER SEQADV 5BQN ASP A 450 UNP P19321 LINKER SEQADV 5BQN LYS A 451 UNP P19321 LINKER SEQADV 5BQN ASP A 452 UNP P19321 LINKER SEQADV 5BQN ARG A 453 UNP P19321 LINKER SEQADV 5BQN TRP A 454 UNP P19321 LINKER SEQADV 5BQN GLY A 455 UNP P19321 LINKER SEQADV 5BQN SER A 456 UNP P19321 LINKER SEQADV 5BQN SER A 457 UNP P19321 LINKER SEQADV 5BQN LEU A 458 UNP P19321 LINKER SEQADV 5BQN GLN A 459 UNP P19321 LINKER SEQADV 5BQN LEU A 873 UNP P19321 EXPRESSION TAG SEQADV 5BQN GLU A 874 UNP P19321 EXPRESSION TAG SEQADV 5BQN ALA A 875 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 876 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 877 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 878 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 879 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 880 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 881 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 882 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 883 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 884 UNP P19321 EXPRESSION TAG SEQADV 5BQN HIS A 885 UNP P19321 EXPRESSION TAG SEQRES 1 A 885 MET THR TRP PRO VAL LYS ASP PHE ASN TYR SER ASP PRO SEQRES 2 A 885 VAL ASN ASP ASN ASP ILE LEU TYR LEU ARG ILE PRO GLN SEQRES 3 A 885 ASN LYS LEU ILE THR THR PRO VAL LYS ALA PHE MET ILE SEQRES 4 A 885 THR GLN ASN ILE TRP VAL ILE PRO GLU ARG PHE SER SER SEQRES 5 A 885 ASP THR ASN PRO SER LEU SER LYS PRO PRO ARG PRO THR SEQRES 6 A 885 SER LYS TYR GLN SER TYR TYR ASP PRO SER TYR LEU SER SEQRES 7 A 885 THR ASP GLU GLN LYS ASP THR PHE LEU LYS GLY ILE ILE SEQRES 8 A 885 LYS LEU PHE LYS ARG ILE ASN GLU ARG ASP ILE GLY LYS SEQRES 9 A 885 LYS LEU ILE ASN TYR LEU VAL VAL GLY SER PRO PHE MET SEQRES 10 A 885 GLY ASP SER SER THR PRO GLU ASP THR PHE ASP PHE THR SEQRES 11 A 885 ARG HIS THR THR ASN ILE ALA VAL GLU LYS PHE GLU ASN SEQRES 12 A 885 GLY SER TRP LYS VAL THR ASN ILE ILE THR PRO SER VAL SEQRES 13 A 885 LEU ILE PHE GLY PRO LEU PRO ASN ILE LEU ASP TYR THR SEQRES 14 A 885 ALA SER LEU THR LEU GLN GLY GLN GLN SER ASN PRO SER SEQRES 15 A 885 PHE GLU GLY PHE GLY THR LEU SER ILE LEU LYS VAL ALA SEQRES 16 A 885 PRO GLU PHE LEU LEU THR PHE SER ASP VAL THR SER ASN SEQRES 17 A 885 GLN SER SER ALA VAL LEU GLY LYS SER ILE PHE CYS MET SEQRES 18 A 885 ASP PRO VAL ILE ALA LEU MET HIS GLN LEU THR TYR SER SEQRES 19 A 885 LEU HIS GLN LEU TYR GLY ILE ASN ILE PRO SER ASP LYS SEQRES 20 A 885 ARG ILE ARG PRO GLN VAL SER GLU GLY PHE PHE SER GLN SEQRES 21 A 885 ASP GLY PRO ASN VAL GLN PHE GLU GLU LEU TYR THR PHE SEQRES 22 A 885 GLY GLY LEU ASP VAL GLU ILE ILE PRO GLN ILE GLU ARG SEQRES 23 A 885 SER GLN LEU ARG GLU LYS ALA LEU GLY HIS TYR LYS ASP SEQRES 24 A 885 ILE ALA LYS ARG LEU ASN ASN ILE ASN LYS THR ILE PRO SEQRES 25 A 885 SER SER TRP ILE SER ASN ILE ASP LYS TYR LYS LYS ILE SEQRES 26 A 885 PHE SER GLU LYS TYR ASN PHE ASP LYS ASP ASN THR GLY SEQRES 27 A 885 ASN PHE VAL VAL ASN ILE ASP LYS PHE ASN SER LEU TYR SEQRES 28 A 885 SER ASP LEU THR ASN VAL MET SER GLU VAL VAL TYR SER SEQRES 29 A 885 SER GLN TYR ASN VAL LYS ASN ARG THR HIS TYR PHE SER SEQRES 30 A 885 ARG HIS TYR LEU PRO VAL PHE ALA ASN ILE LEU ASP ASP SEQRES 31 A 885 ASN ILE TYR THR ILE ARG ASP GLY PHE ASN LEU THR ASN SEQRES 32 A 885 LYS GLY PHE ASN ILE GLU ASN SER GLY GLN ASN ILE GLU SEQRES 33 A 885 ARG ASN PRO ALA LEU GLN LYS LEU SER SER GLU SER VAL SEQRES 34 A 885 VAL ASP LEU PHE THR LYS VAL CYS VAL ASP LYS SER GLU SEQRES 35 A 885 GLU LYS LEU TYR ASP ASP ASP ASP LYS ASP ARG TRP GLY SEQRES 36 A 885 SER SER LEU GLN CYS ILE LYS VAL LYS ASN ASN ARG LEU SEQRES 37 A 885 PRO TYR VAL ALA ASP LYS ASP SER ILE SER GLN GLU ILE SEQRES 38 A 885 PHE GLU ASN LYS ILE ILE THR ASP GLU THR ASN VAL GLN SEQRES 39 A 885 ASN TYR SER ASP LYS PHE SER LEU ASP GLU SER ILE LEU SEQRES 40 A 885 ASP GLY GLN VAL PRO ILE ASN PRO GLU ILE VAL ASP PRO SEQRES 41 A 885 LEU LEU PRO ASN VAL ASN MET GLU PRO LEU ASN LEU PRO SEQRES 42 A 885 GLY GLU GLU ILE VAL PHE TYR ASP ASP ILE THR LYS TYR SEQRES 43 A 885 VAL ASP TYR LEU ASN SER TYR TYR TYR LEU GLU SER GLN SEQRES 44 A 885 LYS LEU SER ASN ASN VAL GLU ASN ILE THR LEU THR THR SEQRES 45 A 885 SER VAL GLU GLU ALA LEU GLY TYR SER ASN LYS ILE TYR SEQRES 46 A 885 THR PHE LEU PRO SER LEU ALA GLU LYS VAL ASN LYS GLY SEQRES 47 A 885 VAL GLN ALA GLY LEU PHE LEU ASN TRP ALA ASN GLU VAL SEQRES 48 A 885 VAL GLU ASP PHE THR THR ASN ILE MET LYS LYS ASP THR SEQRES 49 A 885 LEU ASP LYS ILE SER ASP VAL SER VAL ILE ILE PRO TYR SEQRES 50 A 885 ILE GLY PRO ALA LEU ASN ILE GLY ASN SER ALA LEU ARG SEQRES 51 A 885 GLY ASN PHE ASN GLN ALA PHE ALA THR ALA GLY VAL ALA SEQRES 52 A 885 PHE LEU LEU GLU GLY PHE PRO GLU PHE THR ILE PRO ALA SEQRES 53 A 885 LEU GLY VAL PHE THR PHE TYR SER SER ILE GLN GLU ARG SEQRES 54 A 885 GLU LYS ILE ILE LYS THR ILE GLU ASN CYS LEU GLU GLN SEQRES 55 A 885 ARG VAL LYS ARG TRP LYS ASP SER TYR GLN TRP MET VAL SEQRES 56 A 885 SER ASN TRP LEU SER ARG ILE THR THR GLN PHE ASN HIS SEQRES 57 A 885 ILE ASN TYR GLN MET TYR ASP SER LEU SER TYR GLN ALA SEQRES 58 A 885 ASP ALA ILE LYS ALA LYS ILE ASP LEU GLU TYR LYS LYS SEQRES 59 A 885 TYR SER GLY SER ASP LYS GLU ASN ILE LYS SER GLN VAL SEQRES 60 A 885 GLU ASN LEU LYS ASN SER LEU ASP VAL LYS ILE SER GLU SEQRES 61 A 885 ALA MET ASN ASN ILE ASN LYS PHE ILE ARG GLU CYS SER SEQRES 62 A 885 VAL THR TYR LEU PHE LYS ASN MET LEU PRO LYS VAL ILE SEQRES 63 A 885 ASP GLU LEU ASN LYS PHE ASP LEU ARG THR LYS THR GLU SEQRES 64 A 885 LEU ILE ASN LEU ILE ASP SER HIS ASN ILE ILE LEU VAL SEQRES 65 A 885 GLY GLU VAL ASP ARG LEU LYS ALA LYS VAL ASN GLU SER SEQRES 66 A 885 PHE GLU ASN THR MET PRO PHE ASN ILE PHE SER TYR THR SEQRES 67 A 885 ASN ASN SER LEU LEU LYS ASP ILE ILE ASN GLU TYR PHE SEQRES 68 A 885 ASN LEU GLU ALA HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 69 A 885 HIS HET EPE A 901 15 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 HOH *197(H2 O) HELIX 1 AA1 THR A 79 ASN A 98 1 20 HELIX 2 AA2 ARG A 100 GLY A 113 1 14 HELIX 3 AA3 THR A 169 THR A 173 5 5 HELIX 4 AA4 GLN A 175 GLN A 177 5 3 HELIX 5 AA5 GLN A 178 GLU A 184 1 7 HELIX 6 AA6 ASP A 222 TYR A 239 1 18 HELIX 7 AA7 PHE A 267 GLY A 274 1 8 HELIX 8 AA8 GLY A 275 ILE A 281 5 7 HELIX 9 AA9 PRO A 282 ILE A 307 1 26 HELIX 10 AB1 PRO A 312 SER A 317 5 6 HELIX 11 AB2 ASN A 318 ASN A 331 1 14 HELIX 12 AB3 ASN A 343 ASN A 356 1 14 HELIX 13 AB4 SER A 359 TYR A 367 1 9 HELIX 14 AB5 LEU A 401 GLY A 405 5 5 HELIX 15 AB6 ASN A 466 LEU A 468 5 3 HELIX 16 AB7 ASP A 473 ILE A 477 5 5 HELIX 17 AB8 GLN A 479 GLU A 483 5 5 HELIX 18 AB9 ASN A 551 GLN A 559 1 9 HELIX 19 AC1 SER A 573 TYR A 580 1 8 HELIX 20 AC2 LEU A 588 LYS A 597 1 10 HELIX 21 AC3 LEU A 603 MET A 620 1 18 HELIX 22 AC4 TYR A 637 ASN A 643 1 7 HELIX 23 AC5 ASN A 652 GLY A 661 1 10 HELIX 24 AC6 VAL A 662 LEU A 666 5 5 HELIX 25 AC7 ARG A 689 ILE A 692 5 4 HELIX 26 AC8 ILE A 693 ILE A 722 1 30 HELIX 27 AC9 ILE A 722 TYR A 755 1 34 HELIX 28 AD1 ILE A 763 SER A 773 1 11 HELIX 29 AD2 SER A 773 ASN A 800 1 28 HELIX 30 AD3 MET A 801 HIS A 827 1 27 HELIX 31 AD4 ARG A 837 ASN A 843 1 7 HELIX 32 AD5 SER A 856 THR A 858 5 3 HELIX 33 AD6 ASN A 859 PHE A 871 1 13 SHEET 1 AA1 8 SER A 190 LYS A 193 0 SHEET 2 AA1 8 VAL A 156 PHE A 159 1 N LEU A 157 O LEU A 192 SHEET 3 AA1 8 ILE A 43 ILE A 46 1 N ILE A 46 O ILE A 158 SHEET 4 AA1 8 VAL A 34 THR A 40 -1 N PHE A 37 O VAL A 45 SHEET 5 AA1 8 ILE A 19 ARG A 23 -1 N LEU A 20 O ALA A 36 SHEET 6 AA1 8 ILE A 136 GLU A 142 -1 O GLU A 139 N TYR A 21 SHEET 7 AA1 8 SER A 145 ILE A 152 -1 O ASN A 150 N VAL A 138 SHEET 8 AA1 8 LEU A 522 PRO A 523 -1 O LEU A 522 N ILE A 151 SHEET 1 AA2 2 THR A 126 ASP A 128 0 SHEET 2 AA2 2 LYS A 309 ILE A 311 1 O ILE A 311 N PHE A 127 SHEET 1 AA3 4 ILE A 218 CYS A 220 0 SHEET 2 AA3 4 PHE A 198 SER A 203 -1 N PHE A 202 O PHE A 219 SHEET 3 AA3 4 TYR A 380 PHE A 384 -1 O VAL A 383 N LEU A 199 SHEET 4 AA3 4 GLN A 422 LYS A 423 -1 O GLN A 422 N PHE A 384 SHEET 1 AA4 2 ARG A 248 ILE A 249 0 SHEET 2 AA4 2 VAL A 265 GLN A 266 -1 O VAL A 265 N ILE A 249 SHEET 1 AA5 2 ASP A 333 LYS A 334 0 SHEET 2 AA5 2 PHE A 340 VAL A 341 -1 O VAL A 341 N ASP A 333 SHEET 1 AA6 3 ILE A 461 LYS A 464 0 SHEET 2 AA6 3 PHE A 433 VAL A 438 -1 N VAL A 436 O ILE A 461 SHEET 3 AA6 3 ILE A 543 VAL A 547 1 O VAL A 547 N CYS A 437 SHEET 1 AA7 2 LYS A 485 ILE A 486 0 SHEET 2 AA7 2 PHE A 680 THR A 681 1 O THR A 681 N LYS A 485 SHEET 1 AA8 2 THR A 569 THR A 571 0 SHEET 2 AA8 2 LYS A 583 TYR A 585 1 O ILE A 584 N THR A 571 SHEET 1 AA9 2 ASP A 623 THR A 624 0 SHEET 2 AA9 2 VAL A 633 ILE A 634 -1 O ILE A 634 N ASP A 623 SSBOND 1 CYS A 437 CYS A 460 1555 1555 2.05 CISPEP 1 ILE A 311 PRO A 312 0 -1.57 SITE 1 AC1 9 ARG A 23 THR A 32 TRP A 146 GLN A 479 SITE 2 AC1 9 GLU A 483 ASN A 484 ASN A 531 HOH A1055 SITE 3 AC1 9 HOH A1128 CRYST1 173.545 173.545 222.191 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005762 0.003327 0.000000 0.00000 SCALE2 0.000000 0.006654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004501 0.00000