HEADER SOLUTE-BINDING PROTEIN 29-MAY-15 5BR1 TITLE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN TITLE 2 (IPR025997) FROM AGROBACTERIUM VITIS S4 (AVI_5305, TARGET EFI-511224) TITLE 3 WITH BOUND ALPHA-D-GALACTOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM VITIS; SOURCE 3 ORGANISM_TAXID: 311402; SOURCE 4 STRAIN: S4 / ATCC BAA-846; SOURCE 5 GENE: AVI_5305; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS SOLUTE BINDING PROTEIN, ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL KEYWDS 2 GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.YADAVA,M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH, AUTHOR 2 S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA,S.CHOWDHURY, AUTHOR 3 J.LAFLEUR,J.LOVE,R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME AUTHOR 4 FUNCTION INITIATIVE (EFI) REVDAT 5 15-NOV-23 5BR1 1 REMARK REVDAT 4 27-SEP-23 5BR1 1 HETSYN REVDAT 3 29-JUL-20 5BR1 1 REMARK SITE ATOM REVDAT 2 22-JUN-16 5BR1 1 JRNL REVDAT 1 10-JUN-15 5BR1 0 JRNL AUTH U.YADAVA,M.W.VETTING,N.AL OBAIDI,M.S.CARTER,J.A.GERLT, JRNL AUTH 2 S.C.ALMO JRNL TITL STRUCTURE OF AN ABC TRANSPORTER SOLUTE-BINDING PROTEIN JRNL TITL 2 SPECIFIC FOR THE AMINO SUGARS GLUCOSAMINE AND GALACTOSAMINE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 467 2016 JRNL REFN ESSN 2053-230X JRNL PMID 27303900 JRNL DOI 10.1107/S2053230X16007500 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 20961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.4999 - 3.5282 0.84 2970 170 0.1527 0.2444 REMARK 3 2 3.5282 - 2.8049 0.90 3065 143 0.1690 0.2858 REMARK 3 3 2.8049 - 2.4517 0.92 3092 142 0.1916 0.3095 REMARK 3 4 2.4517 - 2.2281 0.91 3035 159 0.1916 0.2803 REMARK 3 5 2.2281 - 2.0687 0.91 2996 159 0.2024 0.2995 REMARK 3 6 2.0687 - 1.9470 0.87 2858 153 0.2403 0.3495 REMARK 3 7 1.9470 - 1.8496 0.58 1913 106 0.2881 0.3219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2447 REMARK 3 ANGLE : 1.397 3330 REMARK 3 CHIRALITY : 0.061 392 REMARK 3 PLANARITY : 0.008 429 REMARK 3 DIHEDRAL : 13.543 912 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8674 -3.7828 24.1361 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.2578 REMARK 3 T33: 0.1900 T12: 0.0154 REMARK 3 T13: 0.0187 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.9946 L22: 4.7108 REMARK 3 L33: 4.2486 L12: -0.0957 REMARK 3 L13: 0.0192 L23: -2.0466 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: -0.2301 S13: -0.0645 REMARK 3 S21: 0.3202 S22: 0.0971 S23: 0.1434 REMARK 3 S31: -0.2073 S32: -0.0664 S33: -0.1090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2431 -0.5621 31.0555 REMARK 3 T TENSOR REMARK 3 T11: 0.2883 T22: 0.2908 REMARK 3 T33: 0.2053 T12: -0.0099 REMARK 3 T13: -0.0305 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.8978 L22: 0.7326 REMARK 3 L33: 2.3489 L12: -0.7579 REMARK 3 L13: -0.9306 L23: 0.4794 REMARK 3 S TENSOR REMARK 3 S11: 0.0614 S12: -0.2568 S13: 0.1794 REMARK 3 S21: 0.3042 S22: -0.1330 S23: 0.0264 REMARK 3 S31: -0.3247 S32: 0.1921 S33: 0.0324 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9156 -7.6551 31.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.2858 T22: 0.3304 REMARK 3 T33: 0.2445 T12: 0.0073 REMARK 3 T13: -0.0516 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.3736 L22: 2.0832 REMARK 3 L33: 4.6918 L12: 0.3676 REMARK 3 L13: 0.3534 L23: -0.6684 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: -0.2857 S13: -0.2148 REMARK 3 S21: 0.3607 S22: 0.0558 S23: -0.3594 REMARK 3 S31: 0.0661 S32: 0.1547 S33: 0.0070 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8493 -7.1470 6.9463 REMARK 3 T TENSOR REMARK 3 T11: 0.1006 T22: 0.1282 REMARK 3 T33: 0.1772 T12: 0.0006 REMARK 3 T13: -0.0168 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.5009 L22: 0.8221 REMARK 3 L33: 1.8684 L12: -0.0555 REMARK 3 L13: -0.2218 L23: -0.3929 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: -0.0929 S13: -0.0401 REMARK 3 S21: 0.0292 S22: -0.0021 S23: -0.0170 REMARK 3 S31: 0.0883 S32: 0.2809 S33: 0.0419 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1946 5.9850 1.5486 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.1057 REMARK 3 T33: 0.1372 T12: -0.0235 REMARK 3 T13: -0.0053 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.9319 L22: 1.0502 REMARK 3 L33: 1.1294 L12: -0.1636 REMARK 3 L13: -0.0692 L23: 0.2199 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0141 S13: 0.0213 REMARK 3 S21: -0.0269 S22: 0.0004 S23: 0.0014 REMARK 3 S31: -0.0313 S32: -0.0532 S33: -0.0048 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3841 3.5212 -2.8374 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.1907 REMARK 3 T33: 0.1337 T12: 0.0130 REMARK 3 T13: -0.0255 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 2.9157 L22: 5.9287 REMARK 3 L33: 4.3820 L12: 1.4835 REMARK 3 L13: -0.2291 L23: -3.5190 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: 0.4705 S13: -0.0777 REMARK 3 S21: -0.1493 S22: 0.0491 S23: 0.1509 REMARK 3 S31: 0.0518 S32: 0.1188 S33: 0.0928 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0659 -5.7179 7.1332 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1449 REMARK 3 T33: 0.1841 T12: -0.0324 REMARK 3 T13: 0.0026 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.6239 L22: 2.2868 REMARK 3 L33: 5.2442 L12: -0.3635 REMARK 3 L13: 0.3751 L23: -2.5690 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: 0.0437 S13: 0.0345 REMARK 3 S21: 0.0150 S22: 0.1781 S23: 0.1844 REMARK 3 S31: 0.2052 S32: -0.4693 S33: -0.1886 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3470 -20.4177 27.2397 REMARK 3 T TENSOR REMARK 3 T11: 0.3242 T22: 0.3525 REMARK 3 T33: 0.2368 T12: -0.1168 REMARK 3 T13: -0.0041 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 4.8273 L22: 3.7435 REMARK 3 L33: 6.2958 L12: -2.9197 REMARK 3 L13: -2.3363 L23: 4.5955 REMARK 3 S TENSOR REMARK 3 S11: -0.0685 S12: -0.2084 S13: 0.0439 REMARK 3 S21: 0.1903 S22: -0.2459 S23: -0.1457 REMARK 3 S31: 0.3141 S32: -0.0982 S33: 0.3415 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7979 -15.0383 11.3919 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.1199 REMARK 3 T33: 0.1811 T12: 0.0003 REMARK 3 T13: 0.0361 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.5459 L22: 2.3934 REMARK 3 L33: 3.2916 L12: -1.1140 REMARK 3 L13: 1.9694 L23: -1.7814 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: -0.1203 S13: -0.2367 REMARK 3 S21: -0.1068 S22: 0.0734 S23: 0.0962 REMARK 3 S31: 0.2539 S32: -0.1048 S33: -0.1132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54056 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21553 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 16.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.60800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2IOY REMARK 200 REMARK 200 REMARK: SHEET REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (53.5 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM D-GALACTOSAMINE); RESERVOIR (42.1 %(W/V) REMARK 280 PEG 4000); CRYOPROTECTION (RESERVOIR, PAUSE IN AIR DURING REMARK 280 TRANSFER TO LIQUID N2), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.39050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.78750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.85050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.78750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.39050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.85050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 TYR A 19 REMARK 465 PHE A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 MSE A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 THR A 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 247 OE1 GLU A 266 1.50 REMARK 500 HZ2 LYS A 284 O GLU A 346 1.54 REMARK 500 HH TYR A 58 OD1 ASP A 283 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 83 62.75 40.00 REMARK 500 ASP A 115 -42.48 78.12 REMARK 500 LEU A 146 -62.84 69.93 REMARK 500 ASN A 249 -14.49 -147.91 REMARK 500 LYS A 336 74.76 -116.67 REMARK 500 ALA A 340 -137.58 123.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 738 DISTANCE = 6.18 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511224 RELATED DB: TARGETTRACK DBREF 5BR1 A 24 346 UNP B9K0Q5 B9K0Q5_AGRVS 24 346 SEQADV 5BR1 MSE A 1 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 HIS A 2 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 HIS A 3 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 HIS A 4 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 HIS A 5 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 HIS A 6 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 HIS A 7 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 SER A 8 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 SER A 9 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 GLY A 10 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 VAL A 11 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 ASP A 12 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 LEU A 13 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 GLY A 14 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 THR A 15 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 GLU A 16 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 ASN A 17 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 LEU A 18 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 TYR A 19 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 PHE A 20 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 GLN A 21 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 SER A 22 UNP B9K0Q5 EXPRESSION TAG SEQADV 5BR1 MSE A 23 UNP B9K0Q5 EXPRESSION TAG SEQRES 1 A 346 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 346 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ALA GLN THR SEQRES 3 A 346 LYS GLY MSE VAL TYR TYR LEU VAL PRO THR LEU LEU ASP SEQRES 4 A 346 GLU PHE GLN THR GLY SER VAL ASN ALA LEU SER MSE PHE SEQRES 5 A 346 LEU GLY GLN VAL GLY TYR GLU MSE LYS THR LEU ASN ALA SEQRES 6 A 346 ASP ASN LYS THR ASP ALA GLN GLN SER GLN MSE ASN ASP SEQRES 7 A 346 VAL ILE ALA LEU LYS PRO ALA ALA ILE ILE LEU ALA ALA SEQRES 8 A 346 VAL ASP PHE ASN ALA LEU LYS PRO SER ILE GLU ALA ALA SEQRES 9 A 346 ARG ALA ALA GLY ILE PRO VAL VAL GLU PHE ASP ARG GLN SEQRES 10 A 346 ILE THR SER THR PRO SER ASP PHE THR SER VAL ALA GLY SEQRES 11 A 346 THR VAL GLU ILE GLY HIS ILE ALA GLY ASP HIS ALA ILE SEQRES 12 A 346 SER LEU LEU LYS GLY LYS ASN GLY ASP VAL LYS GLY LYS SEQRES 13 A 346 ILE LEU GLN VAL PRO GLY ASP PRO GLY ASP PRO TYR THR SEQRES 14 A 346 LEU ASP ILE GLN LYS GLY PHE GLU GLU LYS ILE LYS ALA SEQRES 15 A 346 PHE PRO GLY VAL LYS ILE ILE SER VAL PRO ALA VAL GLN SEQRES 16 A 346 TRP GLU ALA SER ALA ALA GLY THR ILE VAL SER ASP GLN SEQRES 17 A 346 MSE LEU ALA ASN PRO ASP ILE ASP LEU ILE PHE LEU HIS SEQRES 18 A 346 ALA ALA HIS LEU SER VAL ALA ALA VAL ALA SER LEU GLU SEQRES 19 A 346 ALA ALA GLY LYS LYS PRO GLY ASP VAL MSE LEU MSE SER SEQRES 20 A 346 SER ASN GLY ALA PRO VAL GLY LEU ASP LEU ILE ARG LYS SEQRES 21 A 346 GLY TRP LEU ASN VAL GLU VAL GLU GLN PRO LEU TYR ALA SEQRES 22 A 346 GLN ALA ALA ALA ILE ALA MSE PHE MSE ASP LYS VAL VAL SEQRES 23 A 346 GLY LYS LYS PRO ILE LYS ALA GLY ASP TYR ASP VAL LEU SEQRES 24 A 346 GLY LEU LYS SER VAL VAL THR MSE GLU THR TRP GLY PRO SEQRES 25 A 346 ASN ILE LYS ILE PRO GLY SER ALA ILE THR LYS GLU ASN SEQRES 26 A 346 VAL ASP ASN PRO SER PHE TRP GLY ASN LEU LYS PRO PRO SEQRES 27 A 346 THR ALA ALA ILE LYS SER VAL GLU MODRES 5BR1 MSE A 29 MET MODIFIED RESIDUE MODRES 5BR1 MSE A 51 MET MODIFIED RESIDUE MODRES 5BR1 MSE A 60 MET MODIFIED RESIDUE MODRES 5BR1 MSE A 76 MET MODIFIED RESIDUE MODRES 5BR1 MSE A 209 MET MODIFIED RESIDUE MODRES 5BR1 MSE A 244 MET MODIFIED RESIDUE MODRES 5BR1 MSE A 246 MET MODIFIED RESIDUE MODRES 5BR1 MSE A 280 MET MODIFIED RESIDUE MODRES 5BR1 MSE A 282 MET MODIFIED RESIDUE MODRES 5BR1 MSE A 307 MET MODIFIED RESIDUE HET MSE A 29 10 HET MSE A 51 9 HET MSE A 60 10 HET MSE A 76 17 HET MSE A 209 10 HET MSE A 244 17 HET MSE A 246 17 HET MSE A 280 17 HET MSE A 282 17 HET MSE A 307 17 HET X6X A 401 12 HETNAM MSE SELENOMETHIONINE HETNAM X6X 2-AMINO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN X6X ALPHA-D-GALACTOSAMINE; 2-AMINO-2-DEOXY-ALPHA-D- HETSYN 2 X6X GALACTOSE; 2-AMINO-2-DEOXY-D-GALACTOSE; 2-AMINO-2- HETSYN 3 X6X DEOXY-GALACTOSE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 X6X C6 H13 N O5 FORMUL 3 HOH *238(H2 O) HELIX 1 AA1 ASP A 39 VAL A 56 1 18 HELIX 2 AA2 LYS A 68 LYS A 83 1 16 HELIX 3 AA3 LEU A 97 ALA A 107 1 11 HELIX 4 AA4 GLY A 130 GLY A 151 1 22 HELIX 5 AA5 ASP A 166 LYS A 181 1 16 HELIX 6 AA6 ALA A 193 TRP A 196 5 4 HELIX 7 AA7 GLU A 197 ASN A 212 1 16 HELIX 8 AA8 ALA A 222 ALA A 236 1 15 HELIX 9 AA9 ALA A 251 LYS A 260 1 10 HELIX 10 AB1 PRO A 270 PHE A 281 1 12 HELIX 11 AB2 PHE A 281 GLY A 287 1 7 HELIX 12 AB3 PHE A 331 LEU A 335 5 5 SHEET 1 AA1 8 GLU A 59 ASN A 64 0 SHEET 2 AA1 8 MSE A 29 VAL A 34 1 N TYR A 32 O LEU A 63 SHEET 3 AA1 8 ALA A 86 LEU A 89 1 O ILE A 88 N TYR A 31 SHEET 4 AA1 8 VAL A 111 PHE A 114 1 O VAL A 112 N LEU A 89 SHEET 5 AA1 8 PHE A 125 ALA A 129 1 O PHE A 125 N GLU A 113 SHEET 6 AA1 8 GLY A 311 ILE A 316 1 O ILE A 314 N THR A 126 SHEET 7 AA1 8 LEU A 301 GLU A 308 -1 N THR A 306 O ASN A 313 SHEET 8 AA1 8 GLY A 294 VAL A 298 -1 N TYR A 296 O SER A 303 SHEET 1 AA2 6 VAL A 186 SER A 190 0 SHEET 2 AA2 6 GLY A 155 VAL A 160 1 N GLN A 159 O ILE A 189 SHEET 3 AA2 6 LEU A 217 LEU A 220 1 O PHE A 219 N VAL A 160 SHEET 4 AA2 6 MSE A 244 SER A 247 1 O MSE A 246 N LEU A 220 SHEET 5 AA2 6 VAL A 265 GLU A 268 1 O VAL A 267 N SER A 247 SHEET 6 AA2 6 SER A 319 ILE A 321 -1 O SER A 319 N GLU A 268 LINK C GLY A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N VAL A 30 1555 1555 1.34 LINK C SER A 50 N MSE A 51 1555 1555 1.34 LINK C MSE A 51 N PHE A 52 1555 1555 1.33 LINK C GLU A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N LYS A 61 1555 1555 1.33 LINK C GLN A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N ASN A 77 1555 1555 1.32 LINK C GLN A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N LEU A 210 1555 1555 1.33 LINK C VAL A 243 N MSE A 244 1555 1555 1.33 LINK C MSE A 244 N LEU A 245 1555 1555 1.31 LINK C LEU A 245 N MSE A 246 1555 1555 1.33 LINK C MSE A 246 N SER A 247 1555 1555 1.32 LINK C ALA A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N PHE A 281 1555 1555 1.33 LINK C PHE A 281 N MSE A 282 1555 1555 1.33 LINK C MSE A 282 N ASP A 283 1555 1555 1.33 LINK C THR A 306 N MSE A 307 1555 1555 1.33 LINK C MSE A 307 N GLU A 308 1555 1555 1.33 CRYST1 36.781 63.701 119.575 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027188 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008363 0.00000