HEADER HYDROLASE INHIBITOR/HYDROLASE 01-JUN-15 5BRR TITLE MICHAELIS COMPLEX OF TPA-S195A:PAI-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN ACTIVATOR INHIBITOR 1; COMPND 3 CHAIN: I; COMPND 4 SYNONYM: PAI-1,ENDOTHELIAL PLASMINOGEN ACTIVATOR INHIBITOR,SERPIN E1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TISSUE-TYPE PLASMINOGEN ACTIVATOR; COMPND 9 CHAIN: E; COMPND 10 FRAGMENT: UNP RESIDUES 311-562; COMPND 11 SYNONYM: TPA; COMPND 12 EC: 3.4.21.68; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SERPINE1, PAI1, PLANH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PLAT; SOURCE 13 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS CBS 7435; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 981350; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: X-33 KEYWDS TISSUE-TYPE PLASMINOGEN ACTIVATOR CATALYTIC DOMAIN, PLASMINOGEN KEYWDS 2 ACTIVATOR INHIBITOR 1, STRUCTURE-ACTIVITY RELATIONSHIP, KEYWDS 3 THROMBOLYSIS, HYDROLASE INHIBITOR-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.GONG REVDAT 5 18-OCT-17 5BRR 1 JRNL REMARK REVDAT 4 11-NOV-15 5BRR 1 JRNL REVDAT 3 16-SEP-15 5BRR 1 JRNL REVDAT 2 09-SEP-15 5BRR 1 JRNL REVDAT 1 02-SEP-15 5BRR 0 JRNL AUTH L.GONG,M.LIU,T.ZENG,X.SHI,C.YUAN,P.A.ANDREASEN,M.HUANG JRNL TITL CRYSTAL STRUCTURE OF THE MICHAELIS COMPLEX BETWEEN JRNL TITL 2 TISSUE-TYPE PLASMINOGEN ACTIVATOR AND PLASMINOGEN ACTIVATORS JRNL TITL 3 INHIBITOR-1 JRNL REF J.BIOL.CHEM. V. 290 25795 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26324706 JRNL DOI 10.1074/JBC.M115.677567 REMARK 2 REMARK 2 RESOLUTION. 3.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 893 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.55000 REMARK 3 B22 (A**2) : -2.61000 REMARK 3 B33 (A**2) : 6.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.448 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.619 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.852 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5045 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4818 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6791 ; 1.522 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11061 ; 0.885 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 7.688 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;36.479 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 849 ;21.611 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;25.229 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 763 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5515 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1167 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2465 ; 2.437 ; 4.663 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2464 ; 2.435 ; 4.662 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3034 ; 4.118 ; 6.972 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3035 ; 4.118 ; 6.973 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2580 ; 2.194 ; 4.932 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2580 ; 2.193 ; 4.932 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3758 ; 3.730 ; 7.291 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5905 ; 7.135 ;37.727 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5906 ; 7.135 ;37.729 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13390 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.160 REMARK 200 RESOLUTION RANGE LOW (A) : 35.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 6000, 0.1 M TRIS-HCL, PH 7.4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.87000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.87000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL I 1 REMARK 465 HIS I 2 REMARK 465 HIS I 3 REMARK 465 PRO I 4 REMARK 465 PRO I 5 REMARK 465 SER I 6 REMARK 465 TYR I 7 REMARK 465 PRO E 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN E 129 O HOH E 401 1.30 REMARK 500 SG CYS E 50 SG CYS E 111 1.73 REMARK 500 ND1 HIS E 37 O GLY E 37E 1.90 REMARK 500 O PHE E 40 O1 GOL E 301 1.90 REMARK 500 O ILE I 91 O TYR I 170 1.91 REMARK 500 O GLY I 332 N VAL I 334 1.95 REMARK 500 NZ LYS I 207 OE1 GLN E 60 1.96 REMARK 500 NE2 GLN I 56 OE1 GLN I 59 1.98 REMARK 500 CB HIS I 190 NZ LYS I 243 2.07 REMARK 500 O PRO E 131 OG1 THR E 134 2.08 REMARK 500 O HIS I 190 NZ LYS I 243 2.09 REMARK 500 OE2 GLU E 38 O2 GOL E 304 2.13 REMARK 500 OD1 ASP I 181 CB ALA I 335 2.17 REMARK 500 OD1 ASP I 125 OG SER I 127 2.18 REMARK 500 C HIS I 190 NZ LYS I 243 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG I 115 OE1 GLN I 303 4455 1.52 REMARK 500 CG ARG I 115 CZ PHE I 302 4455 1.71 REMARK 500 CD ARG I 115 CD2 PHE I 302 4455 1.92 REMARK 500 NZ LYS I 80 OE2 GLU I 313 4455 1.97 REMARK 500 NH1 ARG I 118 CG GLU I 313 4455 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR E 169 C THR E 169 O -0.138 REMARK 500 SER E 169A C GLN E 169B N 0.184 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO E 186E C - N - CD ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS I 28 -125.80 45.67 REMARK 500 ASP I 29 69.79 -118.23 REMARK 500 PRO I 85 74.98 -111.18 REMARK 500 TRP I 86 -18.18 152.65 REMARK 500 ILE I 91 -84.20 -114.74 REMARK 500 SER I 92 108.06 78.14 REMARK 500 ARG I 101 -71.35 -47.24 REMARK 500 ARG I 118 -8.54 71.40 REMARK 500 SER I 149 -69.52 -127.78 REMARK 500 LEU I 151 95.63 -165.34 REMARK 500 ALA I 156 1.66 -64.86 REMARK 500 ASP I 158 -158.26 -116.75 REMARK 500 GLN I 174 79.07 108.00 REMARK 500 SER I 195 -172.96 -28.88 REMARK 500 ASN I 206 -159.19 -130.04 REMARK 500 SER I 248 71.91 -66.42 REMARK 500 ALA I 249 -42.20 -150.99 REMARK 500 MET I 295 63.06 -118.92 REMARK 500 SER I 310 -98.75 -75.76 REMARK 500 ASP I 311 -48.45 96.31 REMARK 500 LEU I 315 110.27 -163.55 REMARK 500 ASN I 329 -109.21 -152.32 REMARK 500 GLU I 330 49.95 -141.40 REMARK 500 SER I 331 -57.34 105.97 REMARK 500 THR I 333 -36.27 57.48 REMARK 500 VAL I 334 -80.21 -35.61 REMARK 500 ALA I 335 174.48 76.32 REMARK 500 SER I 336 115.06 -37.10 REMARK 500 THR I 339 -62.77 -106.59 REMARK 500 SER I 344 -114.22 71.21 REMARK 500 ILE I 354 74.95 -114.09 REMARK 500 HIS E 27 54.23 -145.26 REMARK 500 PRO E 28 6.85 -66.10 REMARK 500 HIS E 37 -179.22 -62.02 REMARK 500 ARG E 37B -38.39 -134.17 REMARK 500 SER E 110C 11.70 51.33 REMARK 500 CYS E 111 -104.14 -106.75 REMARK 500 SER E 115 -166.70 -169.13 REMARK 500 TRP E 133 18.16 57.38 REMARK 500 CYS E 168 61.23 -111.64 REMARK 500 THR E 186 40.07 -101.79 REMARK 500 ALA E 186G 106.91 171.38 REMARK 500 ASN E 186H 79.21 -105.88 REMARK 500 SER E 214 -77.16 -134.39 REMARK 500 LEU E 217 55.57 -112.90 REMARK 500 LYS E 222 81.81 -68.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG I 131 ALA I 132 145.35 REMARK 500 ASN I 252 ILE I 253 149.46 REMARK 500 LEU E 217 GLY E 219 -146.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE E 305 DBREF 5BRR I 1 379 UNP P05121 PAI1_HUMAN 24 402 DBREF 5BRR E 16 244 UNP P00750 TPA_HUMAN 311 562 SEQADV 5BRR HIS I 150 UNP P05121 ASN 173 ENGINEERED MUTATION SEQADV 5BRR THR I 154 UNP P05121 LYS 177 ENGINEERED MUTATION SEQADV 5BRR LEU I 319 UNP P05121 GLN 342 ENGINEERED MUTATION SEQADV 5BRR ILE I 354 UNP P05121 MET 377 ENGINEERED MUTATION SEQADV 5BRR ALA E 122 UNP P00750 CYS 430 ENGINEERED MUTATION SEQADV 5BRR GLN E 173 UNP P00750 ASN 483 ENGINEERED MUTATION SEQADV 5BRR ALA E 195 UNP P00750 SER 513 ENGINEERED MUTATION SEQRES 1 I 379 VAL HIS HIS PRO PRO SER TYR VAL ALA HIS LEU ALA SER SEQRES 2 I 379 ASP PHE GLY VAL ARG VAL PHE GLN GLN VAL ALA GLN ALA SEQRES 3 I 379 SER LYS ASP ARG ASN VAL VAL PHE SER PRO TYR GLY VAL SEQRES 4 I 379 ALA SER VAL LEU ALA MET LEU GLN LEU THR THR GLY GLY SEQRES 5 I 379 GLU THR GLN GLN GLN ILE GLN ALA ALA MET GLY PHE LYS SEQRES 6 I 379 ILE ASP ASP LYS GLY MET ALA PRO ALA LEU ARG HIS LEU SEQRES 7 I 379 TYR LYS GLU LEU MET GLY PRO TRP ASN LYS ASP GLU ILE SEQRES 8 I 379 SER THR THR ASP ALA ILE PHE VAL GLN ARG ASP LEU LYS SEQRES 9 I 379 LEU VAL GLN GLY PHE MET PRO HIS PHE PHE ARG LEU PHE SEQRES 10 I 379 ARG SER THR VAL LYS GLN VAL ASP PHE SER GLU VAL GLU SEQRES 11 I 379 ARG ALA ARG PHE ILE ILE ASN ASP TRP VAL LYS THR HIS SEQRES 12 I 379 THR LYS GLY MET ILE SER HIS LEU LEU GLY THR GLY ALA SEQRES 13 I 379 VAL ASP GLN LEU THR ARG LEU VAL LEU VAL ASN ALA LEU SEQRES 14 I 379 TYR PHE ASN GLY GLN TRP LYS THR PRO PHE PRO ASP SER SEQRES 15 I 379 SER THR HIS ARG ARG LEU PHE HIS LYS SER ASP GLY SER SEQRES 16 I 379 THR VAL SER VAL PRO MET MET ALA GLN THR ASN LYS PHE SEQRES 17 I 379 ASN TYR THR GLU PHE THR THR PRO ASP GLY HIS TYR TYR SEQRES 18 I 379 ASP ILE LEU GLU LEU PRO TYR HIS GLY ASP THR LEU SER SEQRES 19 I 379 MET PHE ILE ALA ALA PRO TYR GLU LYS GLU VAL PRO LEU SEQRES 20 I 379 SER ALA LEU THR ASN ILE LEU SER ALA GLN LEU ILE SER SEQRES 21 I 379 HIS TRP LYS GLY ASN MET THR ARG LEU PRO ARG LEU LEU SEQRES 22 I 379 VAL LEU PRO LYS PHE SER LEU GLU THR GLU VAL ASP LEU SEQRES 23 I 379 ARG LYS PRO LEU GLU ASN LEU GLY MET THR ASP MET PHE SEQRES 24 I 379 ARG GLN PHE GLN ALA ASP PHE THR SER LEU SER ASP GLN SEQRES 25 I 379 GLU PRO LEU HIS VAL ALA LEU ALA LEU GLN LYS VAL LYS SEQRES 26 I 379 ILE GLU VAL ASN GLU SER GLY THR VAL ALA SER SER SER SEQRES 27 I 379 THR ALA VAL ILE VAL SER ALA ARG MET ALA PRO GLU GLU SEQRES 28 I 379 ILE ILE ILE ASP ARG PRO PHE LEU PHE VAL VAL ARG HIS SEQRES 29 I 379 ASN PRO THR GLY THR VAL LEU PHE MET GLY GLN VAL MET SEQRES 30 I 379 GLU PRO SEQRES 1 E 252 ILE LYS GLY GLY LEU PHE ALA ASP ILE ALA SER HIS PRO SEQRES 2 E 252 TRP GLN ALA ALA ILE PHE ALA LYS HIS ARG ARG SER PRO SEQRES 3 E 252 GLY GLU ARG PHE LEU CYS GLY GLY ILE LEU ILE SER SER SEQRES 4 E 252 CYS TRP ILE LEU SER ALA ALA HIS CYS PHE GLN GLU ARG SEQRES 5 E 252 PHE PRO PRO HIS HIS LEU THR VAL ILE LEU GLY ARG THR SEQRES 6 E 252 TYR ARG VAL VAL PRO GLY GLU GLU GLU GLN LYS PHE GLU SEQRES 7 E 252 VAL GLU LYS TYR ILE VAL HIS LYS GLU PHE ASP ASP ASP SEQRES 8 E 252 THR TYR ASP ASN ASP ILE ALA LEU LEU GLN LEU LYS SER SEQRES 9 E 252 ASP SER SER ARG CYS ALA GLN GLU SER SER VAL VAL ARG SEQRES 10 E 252 THR VAL ALA LEU PRO PRO ALA ASP LEU GLN LEU PRO ASP SEQRES 11 E 252 TRP THR GLU CYS GLU LEU SER GLY TYR GLY LYS HIS GLU SEQRES 12 E 252 ALA LEU SER PRO PHE TYR SER GLU ARG LEU LYS GLU ALA SEQRES 13 E 252 HIS VAL ARG LEU TYR PRO SER SER ARG CYS THR SER GLN SEQRES 14 E 252 HIS LEU LEU GLN ARG THR VAL THR ASP ASN MET LEU CYS SEQRES 15 E 252 ALA GLY ASP THR ARG SER GLY GLY PRO GLN ALA ASN LEU SEQRES 16 E 252 HIS ASP ALA CYS GLN GLY ASP ALA GLY GLY PRO LEU VAL SEQRES 17 E 252 CYS LEU ASN ASP GLY ARG MET THR LEU VAL GLY ILE ILE SEQRES 18 E 252 SER TRP GLY LEU GLY CYS GLY GLN LYS ASP VAL PRO GLY SEQRES 19 E 252 VAL TYR THR LYS VAL THR ASN TYR LEU ASP TRP ILE ARG SEQRES 20 E 252 ASP ASN MET ARG PRO HET GOL E 301 6 HET GOL E 302 6 HET GOL E 303 6 HET GOL E 304 6 HET PGE E 305 10 HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 PGE C6 H14 O4 FORMUL 8 HOH *36(H2 O) HELIX 1 AA1 VAL I 8 SER I 27 1 20 HELIX 2 AA2 SER I 35 THR I 49 1 15 HELIX 3 AA3 GLY I 51 GLY I 63 1 13 HELIX 4 AA4 GLY I 70 MET I 83 1 14 HELIX 5 AA5 GLY I 108 ARG I 118 1 11 HELIX 6 AA6 VAL I 129 THR I 144 1 16 HELIX 7 AA7 LEU I 151 VAL I 157 5 7 HELIX 8 AA8 HIS I 229 ASP I 231 5 3 HELIX 9 AA9 SER I 255 MET I 266 1 12 HELIX 10 AB1 LEU I 286 LEU I 293 1 8 HELIX 11 AB2 THR I 296 ARG I 300 5 5 HELIX 12 AB3 ASP E 23 HIS E 27 5 5 HELIX 13 AB4 ALA E 55 GLN E 60 5 6 HELIX 14 AB5 PRO E 60D HIS E 62 5 3 HELIX 15 AB6 PRO E 164 CYS E 168 5 5 HELIX 16 AB7 THR E 169 LEU E 172 5 6 HELIX 17 AB8 TYR E 234 ASN E 241 1 8 SHEET 1 AA1 7 VAL I 32 PHE I 34 0 SHEET 2 AA1 7 VAL I 370 VAL I 376 -1 O MET I 373 N PHE I 34 SHEET 3 AA1 7 PHE I 358 HIS I 364 -1 N PHE I 358 O VAL I 376 SHEET 4 AA1 7 LEU I 233 PRO I 240 -1 N PHE I 236 O VAL I 361 SHEET 5 AA1 7 HIS I 219 PRO I 227 -1 N LEU I 226 O MET I 235 SHEET 6 AA1 7 VAL I 197 THR I 215 -1 N THR I 211 O ILE I 223 SHEET 7 AA1 7 THR I 184 PHE I 189 -1 N HIS I 185 O MET I 201 SHEET 1 AA2 8 VAL I 32 PHE I 34 0 SHEET 2 AA2 8 VAL I 370 VAL I 376 -1 O MET I 373 N PHE I 34 SHEET 3 AA2 8 PHE I 358 HIS I 364 -1 N PHE I 358 O VAL I 376 SHEET 4 AA2 8 LEU I 233 PRO I 240 -1 N PHE I 236 O VAL I 361 SHEET 5 AA2 8 HIS I 219 PRO I 227 -1 N LEU I 226 O MET I 235 SHEET 6 AA2 8 VAL I 197 THR I 215 -1 N THR I 211 O ILE I 223 SHEET 7 AA2 8 THR I 267 PRO I 276 -1 O LEU I 269 N PHE I 208 SHEET 8 AA2 8 GLU I 351 ILE I 353 1 O ILE I 352 N LEU I 272 SHEET 1 AA3 5 LYS I 122 VAL I 124 0 SHEET 2 AA3 5 ASP I 95 GLN I 100 1 N VAL I 99 O VAL I 124 SHEET 3 AA3 5 LEU I 163 ASN I 172 -1 O VAL I 164 N PHE I 98 SHEET 4 AA3 5 VAL I 317 VAL I 328 1 O LYS I 325 N PHE I 171 SHEET 5 AA3 5 PHE I 278 ASP I 285 -1 N VAL I 284 O GLN I 322 SHEET 1 AA4 8 LEU E 20 PHE E 21 0 SHEET 2 AA4 8 LYS E 156 LEU E 162 -1 O GLU E 157 N LEU E 20 SHEET 3 AA4 8 MET E 180 GLY E 184 -1 O GLY E 184 N ARG E 161 SHEET 4 AA4 8 GLY E 226 LYS E 230 -1 O GLY E 226 N ALA E 183 SHEET 5 AA4 8 ARG E 206 TRP E 215 -1 N TRP E 215 O VAL E 227 SHEET 6 AA4 8 PRO E 198 ASN E 203 -1 N ASN E 203 O ARG E 206 SHEET 7 AA4 8 GLU E 135 GLY E 140 -1 N GLU E 137 O VAL E 200 SHEET 8 AA4 8 LYS E 156 LEU E 162 -1 O VAL E 160 N CYS E 136 SHEET 1 AA5 7 GLN E 30 LYS E 36 0 SHEET 2 AA5 7 GLU E 38 SER E 48 -1 O LEU E 41 N ILE E 33 SHEET 3 AA5 7 TRP E 51 SER E 54 -1 O LEU E 53 N ILE E 45 SHEET 4 AA5 7 ALA E 104 LYS E 109 -1 O LEU E 106 N ILE E 52 SHEET 5 AA5 7 GLN E 81 VAL E 90 -1 N GLU E 84 O LYS E 109 SHEET 6 AA5 7 LEU E 64 LEU E 68 -1 N VAL E 66 O PHE E 83 SHEET 7 AA5 7 GLN E 30 LYS E 36 -1 N PHE E 34 O THR E 65 SSBOND 1 CYS E 42 CYS E 58 1555 1555 2.01 SSBOND 2 CYS E 136 CYS E 201 1555 1555 2.01 SSBOND 3 CYS E 168 CYS E 182 1555 1555 2.01 SSBOND 4 CYS E 191 CYS E 220 1555 1555 1.93 LINK CG ARG I 115 CE2 PHE I 302 1555 4455 1.26 LINK CD ARG I 115 CE2 PHE I 302 1555 4455 1.24 CISPEP 1 MET I 83 GLY I 84 0 1.04 CISPEP 2 GLU I 313 PRO I 314 0 -12.57 CISPEP 3 SER I 337 SER I 338 0 2.45 CISPEP 4 GLY E 186D PRO E 186E 0 5.54 CISPEP 5 PRO E 186E GLN E 186F 0 4.90 CISPEP 6 GLY E 219 CYS E 220 0 -7.50 SITE 1 AC1 4 ARG E 39 PHE E 40 PRO I 349 GLU I 351 SITE 1 AC2 4 GLU E 135 GLU E 137 HIS E 159 LEU E 202 SITE 1 AC3 6 LYS E 36 HIS E 37 ARG E 37A HIS E 63 SITE 2 AC3 6 ASP E 132 TRP E 133 SITE 1 AC4 3 GLU E 38 ARG E 70 HOH E 413 SITE 1 AC5 7 GLY E 19 LEU E 20 PHE E 21 PHE E 94 SITE 2 AC5 7 ASP E 96 HIS E 144 LYS E 156 CRYST1 49.740 73.940 201.800 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004955 0.00000