data_5BTM # _entry.id 5BTM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5BTM pdb_00005btm 10.2210/pdb5btm/pdb WWPDB D_1000210501 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-15 2 'Structure model' 1 1 2017-09-06 3 'Structure model' 1 2 2019-12-25 4 'Structure model' 1 3 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Author supporting evidence' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' entity_src_gen 3 2 'Structure model' pdbx_audit_support 4 2 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' pdbx_audit_support 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 3 2 'Structure model' '_pdbx_audit_support.funding_organization' 4 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 5 3 'Structure model' '_pdbx_audit_support.funding_organization' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5BTM _pdbx_database_status.recvd_initial_deposition_date 2015-06-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Park, H.' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 0006-2960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 54 _citation.language ? _citation.page_first 3851 _citation.page_last 3859 _citation.title 'Crystallographic and Computational Analyses of AUUCU Repeating RNA That Causes Spinocerebellar Ataxia Type 10 (SCA10).' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.5b00551 _citation.pdbx_database_id_PubMed 26039897 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Park, H.' 1 ? primary 'Gonzalez, A.L.' 2 ? primary 'Yildirim, I.' 3 ? primary 'Tran, T.' 4 ? primary 'Lohman, J.R.' 5 ? primary 'Fang, P.' 6 ? primary 'Guo, M.' 7 ? primary 'Disney, M.D.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (55-mer)' 17512.295 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GUCAUUCUAUUCUAUCGGCUAAGGAUGAAAGUCUAUGCCGAUUCUAUUCUAUGGC _entity_poly.pdbx_seq_one_letter_code_can GUCAUUCUAUUCUAUCGGCUAAGGAUGAAAGUCUAUGCCGAUUCUAUUCUAUGGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 C n 1 4 A n 1 5 U n 1 6 U n 1 7 C n 1 8 U n 1 9 A n 1 10 U n 1 11 U n 1 12 C n 1 13 U n 1 14 A n 1 15 U n 1 16 C n 1 17 G n 1 18 G n 1 19 C n 1 20 U n 1 21 A n 1 22 A n 1 23 G n 1 24 G n 1 25 A n 1 26 U n 1 27 G n 1 28 A n 1 29 A n 1 30 A n 1 31 G n 1 32 U n 1 33 C n 1 34 U n 1 35 A n 1 36 U n 1 37 G n 1 38 C n 1 39 C n 1 40 G n 1 41 A n 1 42 U n 1 43 U n 1 44 C n 1 45 U n 1 46 A n 1 47 U n 1 48 U n 1 49 C n 1 50 U n 1 51 A n 1 52 U n 1 53 G n 1 54 G n 1 55 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 55 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 ? ? ? A . n A 1 2 U 2 2 ? ? ? A . n A 1 3 C 3 3 ? ? ? A . n A 1 4 A 4 4 ? ? ? A . n A 1 5 U 5 5 ? ? ? A . n A 1 6 U 6 6 ? ? ? A . n A 1 7 C 7 7 ? ? ? A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 U 10 10 10 U U A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 A 14 14 14 A A A . n A 1 15 U 15 15 15 U U A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 C 19 19 19 C C A . n A 1 20 U 20 20 20 U U A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 A 25 25 25 A A A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 A 30 30 30 A A A . n A 1 31 G 31 31 31 G G A . n A 1 32 U 32 32 32 U U A . n A 1 33 C 33 33 33 C C A . n A 1 34 U 34 34 34 U U A . n A 1 35 A 35 35 35 A A A . n A 1 36 U 36 36 36 U U A . n A 1 37 G 37 37 37 G G A . n A 1 38 C 38 38 38 C C A . n A 1 39 C 39 39 39 C C A . n A 1 40 G 40 40 40 G G A . n A 1 41 A 41 41 41 A A A . n A 1 42 U 42 42 42 U U A . n A 1 43 U 43 43 43 U U A . n A 1 44 C 44 44 44 C C A . n A 1 45 U 45 45 45 U U A . n A 1 46 A 46 46 46 A A A . n A 1 47 U 47 47 47 U U A . n A 1 48 U 48 48 48 U U A . n A 1 49 C 49 49 49 C C A . n A 1 50 U 50 50 50 U U A . n A 1 51 A 51 51 ? ? ? A . n A 1 52 U 52 52 ? ? ? A . n A 1 53 G 53 53 ? ? ? A . n A 1 54 G 54 54 ? ? ? A . n A 1 55 C 55 55 ? ? ? A . n B 1 1 G 1 1 ? ? ? B . n B 1 2 U 2 2 ? ? ? B . n B 1 3 C 3 3 ? ? ? B . n B 1 4 A 4 4 ? ? ? B . n B 1 5 U 5 5 ? ? ? B . n B 1 6 U 6 6 ? ? ? B . n B 1 7 C 7 7 ? ? ? B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 U 10 10 10 U U B . n B 1 11 U 11 11 11 U U B . n B 1 12 C 12 12 12 C C B . n B 1 13 U 13 13 13 U U B . n B 1 14 A 14 14 14 A A B . n B 1 15 U 15 15 15 U U B . n B 1 16 C 16 16 16 C C B . n B 1 17 G 17 17 17 G G B . n B 1 18 G 18 18 18 G G B . n B 1 19 C 19 19 19 C C B . n B 1 20 U 20 20 20 U U B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n B 1 24 G 24 24 24 G G B . n B 1 25 A 25 25 25 A A B . n B 1 26 U 26 26 26 U U B . n B 1 27 G 27 27 27 G G B . n B 1 28 A 28 28 28 A A B . n B 1 29 A 29 29 29 A A B . n B 1 30 A 30 30 30 A A B . n B 1 31 G 31 31 31 G G B . n B 1 32 U 32 32 32 U U B . n B 1 33 C 33 33 33 C C B . n B 1 34 U 34 34 34 U U B . n B 1 35 A 35 35 35 A A B . n B 1 36 U 36 36 36 U U B . n B 1 37 G 37 37 37 G G B . n B 1 38 C 38 38 38 C C B . n B 1 39 C 39 39 39 C C B . n B 1 40 G 40 40 40 G G B . n B 1 41 A 41 41 41 A A B . n B 1 42 U 42 42 42 U U B . n B 1 43 U 43 43 43 U U B . n B 1 44 C 44 44 44 C C B . n B 1 45 U 45 45 45 U U B . n B 1 46 A 46 46 46 A A B . n B 1 47 U 47 47 47 U U B . n B 1 48 U 48 48 48 U U B . n B 1 49 C 49 49 49 C C B . n B 1 50 U 50 50 50 U U B . n B 1 51 A 51 51 ? ? ? B . n B 1 52 U 52 52 ? ? ? B . n B 1 53 G 53 53 ? ? ? B . n B 1 54 G 54 54 ? ? ? B . n B 1 55 C 55 55 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 3 MG MG A . D 3 NA 1 102 2 NA NA A . E 2 MG 1 101 1 MG MG B . F 2 MG 1 102 2 MG MG B . G 3 NA 1 103 1 NA NA B . H 4 HOH 1 201 1 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0069 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5BTM _cell.details ? _cell.formula_units_Z ? _cell.length_a 63.120 _cell.length_a_esd ? _cell.length_b 63.120 _cell.length_b_esd ? _cell.length_c 72.950 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5BTM _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM ammonium acetate, 5 mM Mg sulfate, 50 mM MES pH 6.0, and 600 mM NaCl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-03-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.987 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5BTM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.778 _reflns.d_resolution_low 75.08 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7995 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] 0.16 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] 0.16 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.32 _refine.B_iso_max ? _refine.B_iso_mean 40.637 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.929 _refine.correlation_coeff_Fo_to_Fc_free 0.852 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5BTM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.778 _refine.ls_d_res_low 63.12 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6921 _refine.ls_number_reflns_R_free 374 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.97 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.17829 _refine.ls_R_factor_R_free 0.22425 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.17581 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.325 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 9.185 _refine.overall_SU_ML 0.194 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1812 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 1818 _refine_hist.d_res_high 2.778 _refine_hist.d_res_low 63.12 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.011 2020 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 828 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.675 1.296 3138 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.595 3.000 2032 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.109 0.200 344 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 0.020 974 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 420 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.541 4.328 2020 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.527 4.326 2019 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.220 6.458 3139 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.602 42.275 2567 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 7.602 42.253 2566 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.778 _refine_ls_shell.d_res_low 2.850 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_R_work 509 _refine_ls_shell.percent_reflns_obs 99.81 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.223 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.201 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5BTM _struct.title 'Crystal structure of AUUCU repeating RNA that causes spinocerebellar ataxia type 10 (SCA10)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5BTM _struct_keywords.text 'nucleic acids, RNA structure, repeat expansion disorder, genetic disease, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5BTM _struct_ref.pdbx_db_accession 5BTM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5BTM A 1 ? 55 ? 5BTM 1 ? 55 ? 1 55 2 1 5BTM B 1 ? 55 ? 5BTM 1 ? 55 ? 1 55 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D 2 1 B,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 13 OP1 ? ? ? 1_555 E MG . MG ? ? A U 13 B MG 101 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc2 metalc ? ? A A 21 "O3'" ? ? ? 1_555 D NA . NA ? ? A A 21 A NA 102 1_555 ? ? ? ? ? ? ? 2.975 ? ? metalc3 metalc ? ? A A 21 "O2'" ? ? ? 1_555 D NA . NA ? ? A A 21 A NA 102 1_555 ? ? ? ? ? ? ? 2.629 ? ? metalc4 metalc ? ? A G 23 O6 ? ? ? 1_555 D NA . NA ? ? A G 23 A NA 102 1_555 ? ? ? ? ? ? ? 3.091 ? ? metalc5 metalc ? ? A G 24 O6 ? ? ? 1_555 D NA . NA ? ? A G 24 A NA 102 1_555 ? ? ? ? ? ? ? 2.640 ? ? metalc6 metalc ? ? B A 21 "O3'" ? ? ? 1_555 G NA . NA ? ? B A 21 B NA 103 1_555 ? ? ? ? ? ? ? 2.936 ? ? metalc7 metalc ? ? B A 21 "O2'" ? ? ? 1_555 G NA . NA ? ? B A 21 B NA 103 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc8 metalc ? ? B G 23 O6 ? ? ? 1_555 G NA . NA ? ? B G 23 B NA 103 1_555 ? ? ? ? ? ? ? 3.022 ? ? metalc9 metalc ? ? B G 24 O6 ? ? ? 1_555 G NA . NA ? ? B G 24 B NA 103 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc10 metalc ? ? B G 37 OP1 ? ? ? 1_555 E MG . MG ? ? B G 37 B MG 101 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc11 metalc ? ? B C 38 OP2 ? ? ? 1_555 E MG . MG ? ? B C 38 B MG 101 1_555 ? ? ? ? ? ? ? 2.570 ? ? hydrog1 hydrog ? ? A U 8 O4 ? ? ? 1_555 A U 48 N3 ? ? A U 8 A U 48 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog2 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 9 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 9 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 10 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 10 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 45 O4 ? ? A U 11 A U 45 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog7 hydrog ? ? A U 11 O2 ? ? ? 1_555 A U 45 N3 ? ? A U 11 A U 45 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog8 hydrog ? ? A U 13 N3 ? ? ? 1_555 A U 43 O4 ? ? A U 13 A U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog9 hydrog ? ? A U 13 O2 ? ? ? 1_555 A U 43 N3 ? ? A U 13 A U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog10 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 14 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 14 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 41 N1 ? ? A U 15 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 41 N6 ? ? A U 15 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 16 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 16 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 16 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 17 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 17 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 17 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 18 A C 38 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog21 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 19 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 19 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 19 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 20 A A 35 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog25 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 20 A A 35 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog26 hydrog ? ? A G 23 N1 ? ? ? 1_555 A U 34 O2 ? ? A G 23 A U 34 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A G 23 O6 ? ? ? 1_555 A U 34 N3 ? ? A G 23 A U 34 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 24 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 24 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 24 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 25 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 25 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 26 N3 ? ? ? 1_555 A G 31 O6 ? ? A U 26 A G 31 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? A U 26 O2 ? ? ? 1_555 A G 31 N1 ? ? A U 26 A G 31 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A G 27 N2 ? ? ? 1_555 A A 30 N7 ? ? A G 27 A A 30 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog36 hydrog ? ? B U 8 O4 ? ? ? 1_555 B U 48 N3 ? ? B U 8 B U 48 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog37 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 47 N3 ? ? B A 9 B U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 47 O4 ? ? B A 9 B U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 46 N1 ? ? B U 10 B A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 46 N6 ? ? B U 10 B A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B U 11 N3 ? ? ? 1_555 B U 45 O4 ? ? B U 11 B U 45 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog42 hydrog ? ? B U 11 O2 ? ? ? 1_555 B U 45 N3 ? ? B U 11 B U 45 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog43 hydrog ? ? B U 13 N3 ? ? ? 1_555 B U 43 O4 ? ? B U 13 B U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog44 hydrog ? ? B U 13 O2 ? ? ? 1_555 B U 43 N3 ? ? B U 13 B U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog45 hydrog ? ? B A 14 N1 ? ? ? 1_555 B U 42 N3 ? ? B A 14 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B A 14 N6 ? ? ? 1_555 B U 42 O4 ? ? B A 14 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B U 15 N3 ? ? ? 1_555 B A 41 N1 ? ? B U 15 B A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B U 15 O4 ? ? ? 1_555 B A 41 N6 ? ? B U 15 B A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 40 N1 ? ? B C 16 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 40 O6 ? ? B C 16 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 40 N2 ? ? B C 16 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 39 N3 ? ? B G 17 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 39 O2 ? ? B G 17 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 39 N4 ? ? B G 17 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 18 N1 ? ? ? 1_555 B C 38 N3 ? ? B G 18 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 18 N2 ? ? ? 1_555 B C 38 O2 ? ? B G 18 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 18 O6 ? ? ? 1_555 B C 38 N4 ? ? B G 18 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 19 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 19 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 19 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B U 20 N3 ? ? ? 1_555 B A 35 N7 ? ? B U 20 B A 35 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog62 hydrog ? ? B U 20 O2 ? ? ? 1_555 B A 35 N6 ? ? B U 20 B A 35 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog63 hydrog ? ? B G 23 N1 ? ? ? 1_555 B U 34 O2 ? ? B G 23 B U 34 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? B G 23 O6 ? ? ? 1_555 B U 34 N3 ? ? B G 23 B U 34 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 33 N3 ? ? B G 24 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 24 N2 ? ? ? 1_555 B C 33 O2 ? ? B G 24 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 24 O6 ? ? ? 1_555 B C 33 N4 ? ? B G 24 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B A 25 N1 ? ? ? 1_555 B U 32 N3 ? ? B A 25 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B A 25 N6 ? ? ? 1_555 B U 32 O4 ? ? B A 25 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B U 26 N3 ? ? ? 1_555 B G 31 O6 ? ? B U 26 B G 31 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? B U 26 O2 ? ? ? 1_555 B G 31 N1 ? ? B U 26 B G 31 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? B G 27 N2 ? ? ? 1_555 B A 30 N7 ? ? B G 27 B A 30 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 13 ? A U 13 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 OP1 ? B G 37 ? B G 37 ? 1_555 67.6 ? 2 OP1 ? A U 13 ? A U 13 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 OP2 ? B C 38 ? B C 38 ? 1_555 73.2 ? 3 OP1 ? B G 37 ? B G 37 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 OP2 ? B C 38 ? B C 38 ? 1_555 80.7 ? 4 "O3'" ? A A 21 ? A A 21 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 "O2'" ? A A 21 ? A A 21 ? 1_555 57.0 ? 5 "O3'" ? A A 21 ? A A 21 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 103.5 ? 6 "O2'" ? A A 21 ? A A 21 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 64.4 ? 7 "O3'" ? A A 21 ? A A 21 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 151.5 ? 8 "O2'" ? A A 21 ? A A 21 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 95.0 ? 9 O6 ? A G 23 ? A G 23 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O6 ? A G 24 ? A G 24 ? 1_555 63.5 ? 10 "O3'" ? B A 21 ? B A 21 ? 1_555 NA ? G NA . ? B NA 103 ? 1_555 "O2'" ? B A 21 ? B A 21 ? 1_555 57.7 ? 11 "O3'" ? B A 21 ? B A 21 ? 1_555 NA ? G NA . ? B NA 103 ? 1_555 O6 ? B G 23 ? B G 23 ? 1_555 105.9 ? 12 "O2'" ? B A 21 ? B A 21 ? 1_555 NA ? G NA . ? B NA 103 ? 1_555 O6 ? B G 23 ? B G 23 ? 1_555 71.1 ? 13 "O3'" ? B A 21 ? B A 21 ? 1_555 NA ? G NA . ? B NA 103 ? 1_555 O6 ? B G 24 ? B G 24 ? 1_555 159.5 ? 14 "O2'" ? B A 21 ? B A 21 ? 1_555 NA ? G NA . ? B NA 103 ? 1_555 O6 ? B G 24 ? B G 24 ? 1_555 102.2 ? 15 O6 ? B G 23 ? B G 23 ? 1_555 NA ? G NA . ? B NA 103 ? 1_555 O6 ? B G 24 ? B G 24 ? 1_555 67.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 102 ? 4 'binding site for residue NA A 102' AC2 Software B MG 101 ? 3 'binding site for residue MG B 101' AC3 Software B NA 103 ? 4 'binding site for residue NA B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 A A 21 ? A A 21 . ? 1_555 ? 2 AC1 4 A A 22 ? A A 22 . ? 1_555 ? 3 AC1 4 G A 23 ? G A 23 . ? 1_555 ? 4 AC1 4 G A 24 ? G A 24 . ? 1_555 ? 5 AC2 3 U A 13 ? U A 13 . ? 1_555 ? 6 AC2 3 G B 37 ? G B 37 . ? 1_555 ? 7 AC2 3 C B 38 ? C B 38 . ? 1_555 ? 8 AC3 4 A B 21 ? A B 21 . ? 1_555 ? 9 AC3 4 A B 22 ? A B 22 . ? 1_555 ? 10 AC3 4 G B 23 ? G B 23 . ? 1_555 ? 11 AC3 4 G B 24 ? G B 24 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A U 26 ? ? P A G 27 ? ? 1.525 1.607 -0.082 0.012 Y 2 1 "O3'" A U 45 ? ? P A A 46 ? ? 1.507 1.607 -0.100 0.012 Y 3 1 "O3'" A A 46 ? ? P A U 47 ? ? 1.492 1.607 -0.115 0.012 Y 4 1 "O3'" B A 22 ? ? P B G 23 ? ? 1.478 1.607 -0.129 0.012 Y 5 1 P B G 23 ? ? OP1 B G 23 ? ? 1.376 1.485 -0.109 0.017 N 6 1 P B G 23 ? ? OP2 B G 23 ? ? 1.378 1.485 -0.107 0.017 N 7 1 "O3'" B G 23 ? ? P B G 24 ? ? 1.509 1.607 -0.098 0.012 Y 8 1 "O3'" B U 36 ? ? P B G 37 ? ? 1.496 1.607 -0.111 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A C 16 ? ? "C3'" A C 16 ? ? "O3'" A C 16 ? ? 123.46 113.70 9.76 1.60 N 2 1 "O5'" B G 31 ? ? P B G 31 ? ? OP2 B G 31 ? ? 98.50 105.70 -7.20 0.90 N 3 1 "O5'" B A 35 ? ? P B A 35 ? ? OP1 B A 35 ? ? 99.37 105.70 -6.33 0.90 N 4 1 "O5'" B U 36 ? ? P B U 36 ? ? OP2 B U 36 ? ? 100.07 105.70 -5.63 0.90 N 5 1 "C4'" B C 44 ? ? "C3'" B C 44 ? ? "O3'" B C 44 ? ? 128.82 113.00 15.82 2.00 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 1 ? A G 1 2 1 Y 1 A U 2 ? A U 2 3 1 Y 1 A C 3 ? A C 3 4 1 Y 1 A A 4 ? A A 4 5 1 Y 1 A U 5 ? A U 5 6 1 Y 1 A U 6 ? A U 6 7 1 Y 1 A C 7 ? A C 7 8 1 Y 1 A A 51 ? A A 51 9 1 Y 1 A U 52 ? A U 52 10 1 Y 1 A G 53 ? A G 53 11 1 Y 1 A G 54 ? A G 54 12 1 Y 1 A C 55 ? A C 55 13 1 Y 1 B G 1 ? B G 1 14 1 Y 1 B U 2 ? B U 2 15 1 Y 1 B C 3 ? B C 3 16 1 Y 1 B A 4 ? B A 4 17 1 Y 1 B U 5 ? B U 5 18 1 Y 1 B U 6 ? B U 6 19 1 Y 1 B C 7 ? B C 7 20 1 Y 1 B A 51 ? B A 51 21 1 Y 1 B U 52 ? B U 52 22 1 Y 1 B G 53 ? B G 53 23 1 Y 1 B G 54 ? B G 54 24 1 Y 1 B C 55 ? B C 55 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 NA NA NA N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5BTM 'double helix' 5BTM 'a-form double helix' 5BTM tetraloop 5BTM 'mismatched base pair' 5BTM 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 8 1_555 A U 48 1_555 -1.772 -1.122 -0.382 -5.659 -12.772 -6.265 1 A_U8:U48_A A 8 ? A 48 ? ? ? 1 A A 9 1_555 A U 47 1_555 -0.018 -0.177 -0.636 -9.322 -5.086 0.003 2 A_A9:U47_A A 9 ? A 47 ? 20 1 1 A U 10 1_555 A A 46 1_555 -0.247 -0.043 -0.096 6.783 7.142 -0.887 3 A_U10:A46_A A 10 ? A 46 ? 20 1 1 A U 11 1_555 A U 45 1_555 2.436 -1.814 0.001 6.693 -26.028 6.706 4 A_U11:U45_A A 11 ? A 45 ? 16 1 1 A U 13 1_555 A U 43 1_555 1.447 -1.284 0.201 -16.232 -22.405 23.272 5 A_U13:U43_A A 13 ? A 43 ? 16 1 1 A A 14 1_555 A U 42 1_555 0.032 -0.172 -0.083 -4.159 -9.373 10.562 6 A_A14:U42_A A 14 ? A 42 ? 20 1 1 A U 15 1_555 A A 41 1_555 -0.131 -0.192 -0.578 7.522 -23.156 -0.918 7 A_U15:A41_A A 15 ? A 41 ? 20 1 1 A C 16 1_555 A G 40 1_555 -0.170 -0.173 0.398 -0.919 -16.908 -3.889 8 A_C16:G40_A A 16 ? A 40 ? 19 1 1 A G 17 1_555 A C 39 1_555 0.150 0.119 0.227 5.798 -7.139 3.025 9 A_G17:C39_A A 17 ? A 39 ? 19 1 1 A G 18 1_555 A C 38 1_555 -0.310 0.200 0.091 1.000 -11.931 9.114 10 A_G18:C38_A A 18 ? A 38 ? ? 1 1 A C 19 1_555 A G 37 1_555 0.414 -0.133 0.044 -1.076 -13.678 -2.495 11 A_C19:G37_A A 19 ? A 37 ? 19 1 1 A U 20 1_555 A A 35 1_555 4.300 -2.658 -0.457 -19.756 -0.832 -83.751 12 A_U20:A35_A A 20 ? A 35 ? 24 4 1 A G 23 1_555 A U 34 1_555 -2.436 -0.653 -0.205 -2.525 -16.714 -0.657 13 A_G23:U34_A A 23 ? A 34 ? 28 1 1 A G 24 1_555 A C 33 1_555 -0.027 -0.115 0.021 -2.249 -11.230 2.828 14 A_G24:C33_A A 24 ? A 33 ? 19 1 1 A A 25 1_555 A U 32 1_555 -0.252 -0.150 -0.066 -6.316 -13.335 1.564 15 A_A25:U32_A A 25 ? A 32 ? 20 1 1 A U 26 1_555 A G 31 1_555 2.413 -0.373 0.044 -3.475 5.147 3.138 16 A_U26:G31_A A 26 ? A 31 ? 28 1 1 A G 27 1_555 A A 30 1_555 6.985 -4.999 0.863 19.136 -1.398 -14.717 17 A_G27:A30_A A 27 ? A 30 ? ? ? 1 B U 8 1_555 B U 48 1_555 -1.511 -1.028 -0.296 -1.943 -17.138 -9.764 18 B_U8:U48_B B 8 ? B 48 ? ? ? 1 B A 9 1_555 B U 47 1_555 -0.019 -0.211 -0.622 -8.268 -6.050 -0.893 19 B_A9:U47_B B 9 ? B 47 ? 20 1 1 B U 10 1_555 B A 46 1_555 -0.143 -0.138 -0.071 7.253 3.030 -1.698 20 B_U10:A46_B B 10 ? B 46 ? 20 1 1 B U 11 1_555 B U 45 1_555 2.524 -1.911 -0.036 5.769 -24.896 3.830 21 B_U11:U45_B B 11 ? B 45 ? 16 1 1 B U 13 1_555 B U 43 1_555 1.513 -1.296 0.119 -15.823 -21.527 26.550 22 B_U13:U43_B B 13 ? B 43 ? 16 1 1 B A 14 1_555 B U 42 1_555 0.074 -0.194 -0.121 -7.157 -9.413 12.112 23 B_A14:U42_B B 14 ? B 42 ? 20 1 1 B U 15 1_555 B A 41 1_555 -0.157 -0.188 -0.592 4.790 -21.263 -0.312 24 B_U15:A41_B B 15 ? B 41 ? 20 1 1 B C 16 1_555 B G 40 1_555 -0.175 -0.143 0.378 -1.130 -12.583 -3.699 25 B_C16:G40_B B 16 ? B 40 ? 19 1 1 B G 17 1_555 B C 39 1_555 0.100 0.137 0.162 8.247 -1.652 4.276 26 B_G17:C39_B B 17 ? B 39 ? 19 1 1 B G 18 1_555 B C 38 1_555 -0.327 0.159 -0.004 1.408 -11.589 9.634 27 B_G18:C38_B B 18 ? B 38 ? 19 1 1 B C 19 1_555 B G 37 1_555 0.387 -0.194 0.000 -2.373 -13.118 -5.227 28 B_C19:G37_B B 19 ? B 37 ? 19 1 1 B U 20 1_555 B A 35 1_555 4.298 -2.700 -0.409 -18.490 0.249 -84.144 29 B_U20:A35_B B 20 ? B 35 ? 24 4 1 B G 23 1_555 B U 34 1_555 -2.499 -0.670 -0.270 -1.559 -15.332 -0.795 30 B_G23:U34_B B 23 ? B 34 ? 28 1 1 B G 24 1_555 B C 33 1_555 -0.033 -0.140 0.035 -1.986 -11.654 2.875 31 B_G24:C33_B B 24 ? B 33 ? 19 1 1 B A 25 1_555 B U 32 1_555 -0.201 -0.186 -0.021 -6.066 -13.324 1.665 32 B_A25:U32_B B 25 ? B 32 ? 20 1 1 B U 26 1_555 B G 31 1_555 2.434 -0.408 0.083 -3.229 5.492 3.734 33 B_U26:G31_B B 26 ? B 31 ? 28 1 1 B G 27 1_555 B A 30 1_555 6.966 -4.988 0.851 19.271 -1.359 -14.717 34 B_G27:A30_B B 27 ? B 30 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 8 1_555 A U 48 1_555 A A 9 1_555 A U 47 1_555 0.075 -1.923 3.582 -0.253 8.327 34.060 -4.481 -0.164 3.041 13.958 0.425 35.034 1 AA_U8A9:U47U48_AA A 8 ? A 48 ? A 9 ? A 47 ? 1 A A 9 1_555 A U 47 1_555 A U 10 1_555 A A 46 1_555 -0.273 -1.988 2.990 -6.602 0.559 25.986 -4.421 -0.978 2.926 1.219 14.386 26.803 2 AA_A9U10:A46U47_AA A 9 ? A 47 ? A 10 ? A 46 ? 1 A U 10 1_555 A A 46 1_555 A U 11 1_555 A U 45 1_555 -0.088 -1.351 3.180 1.016 17.914 40.344 -3.316 0.204 2.398 24.560 -1.393 44.002 3 AA_U10U11:U45A46_AA A 10 ? A 46 ? A 11 ? A 45 ? 1 A U 11 1_555 A U 45 1_555 A U 13 1_555 A U 43 1_555 0.593 -2.781 6.899 9.516 22.015 70.556 -3.721 0.117 5.967 18.535 -8.012 74.017 4 AA_U11U13:U43U45_AA A 11 ? A 45 ? A 13 ? A 43 ? 1 A U 13 1_555 A U 43 1_555 A A 14 1_555 A U 42 1_555 -0.509 -1.205 2.501 4.952 14.658 20.573 -5.338 2.033 1.232 35.302 -11.926 25.692 5 AA_U13A14:U42U43_AA A 13 ? A 43 ? A 14 ? A 42 ? 1 A A 14 1_555 A U 42 1_555 A U 15 1_555 A A 41 1_555 -0.796 -0.816 2.951 3.222 10.061 28.117 -3.335 2.101 2.418 19.845 -6.354 29.999 6 AA_A14U15:A41U42_AA A 14 ? A 42 ? A 15 ? A 41 ? 1 A U 15 1_555 A A 41 1_555 A C 16 1_555 A G 40 1_555 0.402 -0.825 3.630 -6.310 7.036 34.587 -2.430 -1.629 3.284 11.569 10.375 35.817 7 AA_U15C16:G40A41_AA A 15 ? A 41 ? A 16 ? A 40 ? 1 A C 16 1_555 A G 40 1_555 A G 17 1_555 A C 39 1_555 0.536 -1.480 2.894 2.600 5.987 33.488 -3.334 -0.563 2.630 10.270 -4.459 34.100 8 AA_C16G17:C39G40_AA A 16 ? A 40 ? A 17 ? A 39 ? 1 A G 17 1_555 A C 39 1_555 A G 18 1_555 A C 38 1_555 1.033 -2.090 3.233 2.677 7.781 27.957 -5.721 -1.516 2.652 15.680 -5.395 29.120 9 AA_G17G18:C38C39_AA A 17 ? A 39 ? A 18 ? A 38 ? 1 A G 18 1_555 A C 38 1_555 A C 19 1_555 A G 37 1_555 -1.379 -2.377 3.261 -2.513 3.256 32.414 -4.778 2.025 3.110 5.804 4.479 32.667 10 AA_G18C19:G37C38_AA A 18 ? A 38 ? A 19 ? A 37 ? 1 A C 19 1_555 A G 37 1_555 A U 20 1_555 A A 35 1_555 -2.614 -1.922 3.741 9.739 8.221 71.834 -1.907 2.543 3.207 6.953 -8.237 72.805 11 AA_C19U20:A35G37_AA A 19 ? A 37 ? A 20 ? A 35 ? 1 A U 20 1_555 A A 35 1_555 A G 23 1_555 A U 34 1_555 -0.467 -0.289 6.538 9.142 5.147 44.542 -1.264 2.186 6.262 6.681 -11.867 45.699 12 AA_U20G23:U34A35_AA A 20 ? A 35 ? A 23 ? A 34 ? 1 A G 23 1_555 A U 34 1_555 A G 24 1_555 A C 33 1_555 0.193 -1.136 3.188 -6.067 9.096 41.697 -2.390 -0.825 2.837 12.521 8.351 43.045 13 AA_G23G24:C33U34_AA A 23 ? A 34 ? A 24 ? A 33 ? 1 A G 24 1_555 A C 33 1_555 A A 25 1_555 A U 32 1_555 0.122 -1.715 3.269 2.945 5.670 32.925 -3.867 0.252 2.941 9.887 -5.135 33.522 14 AA_G24A25:U32C33_AA A 24 ? A 33 ? A 25 ? A 32 ? 1 A A 25 1_555 A U 32 1_555 A U 26 1_555 A G 31 1_555 0.470 -1.321 3.256 1.581 5.022 39.988 -2.468 -0.508 3.090 7.305 -2.300 40.319 15 AA_A25U26:G31U32_AA A 25 ? A 32 ? A 26 ? A 31 ? 1 A U 26 1_555 A G 31 1_555 A G 27 1_555 A A 30 1_555 -1.821 -1.042 2.618 3.715 12.280 45.160 -2.066 2.519 2.133 15.621 -4.726 46.855 16 AA_U26G27:A30G31_AA A 26 ? A 31 ? A 27 ? A 30 ? 1 B U 8 1_555 B U 48 1_555 B A 9 1_555 B U 47 1_555 0.108 -1.940 3.604 -0.948 11.053 35.208 -4.590 -0.301 2.882 17.737 1.521 36.861 17 BB_U8A9:U47U48_BB B 8 ? B 48 ? B 9 ? B 47 ? 1 B A 9 1_555 B U 47 1_555 B U 10 1_555 B A 46 1_555 -0.333 -1.928 2.966 -7.210 2.833 27.393 -4.502 -0.796 2.753 5.836 14.853 28.447 18 BB_A9U10:A46U47_BB B 9 ? B 47 ? B 10 ? B 46 ? 1 B U 10 1_555 B A 46 1_555 B U 11 1_555 B U 45 1_555 -0.137 -1.386 3.263 0.895 15.484 41.212 -3.215 0.262 2.601 21.118 -1.220 43.915 19 BB_U10U11:U45A46_BB B 10 ? B 46 ? B 11 ? B 45 ? 1 B U 13 1_555 B U 43 1_555 B A 14 1_555 B U 42 1_555 -0.526 -1.183 2.553 5.265 17.288 20.301 -5.307 1.970 1.072 40.237 -12.255 27.116 20 BB_U13A14:U42U43_BB B 13 ? B 43 ? B 14 ? B 42 ? 1 B A 14 1_555 B U 42 1_555 B U 15 1_555 B A 41 1_555 -0.752 -0.806 2.959 3.837 10.683 26.917 -3.568 2.199 2.348 21.762 -7.815 29.172 21 BB_A14U15:A41U42_BB B 14 ? B 42 ? B 15 ? B 41 ? 1 B U 15 1_555 B A 41 1_555 B C 16 1_555 B G 40 1_555 0.518 -0.883 3.648 -6.111 5.294 32.521 -2.475 -1.988 3.318 9.275 10.706 33.485 22 BB_U15C16:G40A41_BB B 15 ? B 41 ? B 16 ? B 40 ? 1 B C 16 1_555 B G 40 1_555 B G 17 1_555 B C 39 1_555 0.583 -1.565 2.972 1.909 0.043 31.522 -2.883 -0.748 2.999 0.079 -3.511 31.578 23 BB_C16G17:C39G40_BB B 16 ? B 40 ? B 17 ? B 39 ? 1 B G 17 1_555 B C 39 1_555 B G 18 1_555 B C 38 1_555 0.944 -2.090 3.372 2.158 7.032 27.799 -5.735 -1.434 2.832 14.321 -4.394 28.737 24 BB_G17G18:C38C39_BB B 17 ? B 39 ? B 18 ? B 38 ? 1 B G 18 1_555 B C 38 1_555 B C 19 1_555 B G 37 1_555 -1.477 -2.352 3.319 -3.136 3.112 33.982 -4.483 2.013 3.217 5.296 5.337 34.259 25 BB_G18C19:G37C38_BB B 18 ? B 38 ? B 19 ? B 37 ? 1 B C 19 1_555 B G 37 1_555 B U 20 1_555 B A 35 1_555 -2.617 -1.906 3.750 8.848 8.050 71.178 -1.910 2.543 3.247 6.868 -7.549 72.045 26 BB_C19U20:A35G37_BB B 19 ? B 37 ? B 20 ? B 35 ? 1 B U 20 1_555 B A 35 1_555 B G 23 1_555 B U 34 1_555 -0.519 -0.200 6.560 8.843 5.267 44.550 -1.174 2.208 6.291 6.840 -11.483 45.665 27 BB_U20G23:U34A35_BB B 20 ? B 35 ? B 23 ? B 34 ? 1 B G 23 1_555 B U 34 1_555 B G 24 1_555 B C 33 1_555 0.165 -1.136 3.227 -6.783 8.197 41.964 -2.306 -0.856 2.906 11.231 9.293 43.233 28 BB_G23G24:C33U34_BB B 23 ? B 34 ? B 24 ? B 33 ? 1 B G 24 1_555 B C 33 1_555 B A 25 1_555 B U 32 1_555 0.072 -1.683 3.257 2.317 6.202 33.461 -3.808 0.227 2.906 10.642 -3.977 34.091 29 BB_G24A25:U32C33_BB B 24 ? B 33 ? B 25 ? B 32 ? 1 B A 25 1_555 B U 32 1_555 B U 26 1_555 B G 31 1_555 0.522 -1.278 3.252 1.761 5.877 39.747 -2.507 -0.565 3.060 8.581 -2.571 40.199 30 BB_A25U26:G31U32_BB B 25 ? B 32 ? B 26 ? B 31 ? 1 B U 26 1_555 B G 31 1_555 B G 27 1_555 B A 30 1_555 -1.779 -1.019 2.624 4.279 12.164 44.136 -2.086 2.556 2.115 15.792 -5.555 45.890 31 BB_U26G27:A30G31_BB B 26 ? B 31 ? B 27 ? B 30 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01-GM079235 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5BTM _atom_sites.fract_transf_matrix[1][1] 0.015843 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015843 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013708 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P # loop_