HEADER MEMBRANE PROTEIN 04-JUN-15 5BUN TITLE CRYSTAL STRUCTURE OF AN ANTIGENIC OUTER MEMBRANE PROTEIN ST50 FROM TITLE 2 SALMONELLA TYPHI COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHI; SOURCE 4 ORGANISM_TAXID: 90370; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OUTER MEMBRANE PROTEIN, TOLC-LIKE, MULTIPLE DRUG EFFLUX PUMP, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.YOSHIMURA,P.CHUANKHAYAN,C.C.LIN,N.C.CHEN,M.C.YANG,H.K.FUN REVDAT 4 08-NOV-23 5BUN 1 HETSYN REVDAT 3 29-JUL-20 5BUN 1 COMPND REMARK HETNAM SITE REVDAT 2 19-FEB-20 5BUN 1 REMARK REVDAT 1 23-DEC-15 5BUN 0 JRNL AUTH H.H.GUAN,M.YOSHIMURA,P.CHUANKHAYAN,C.C.LIN,N.C.CHEN, JRNL AUTH 2 M.C.YANG,A.ISMAIL,H.K.FUN,C.J.CHEN JRNL TITL CRYSTAL STRUCTURE OF AN ANTIGENIC OUTER-MEMBRANE PROTEIN JRNL TITL 2 FROM SALMONELLA TYPHI SUGGESTS A POTENTIAL ANTIGENIC LOOP JRNL TITL 3 AND AN EFFLUX MECHANISM. JRNL REF SCI REP V. 5 16441 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26563565 JRNL DOI 10.1038/SREP16441 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.2 REMARK 3 NUMBER OF REFLECTIONS : 34863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9361 - 6.9769 0.98 3050 172 0.2016 0.2285 REMARK 3 2 6.9769 - 5.5493 1.00 3036 137 0.2520 0.2947 REMARK 3 3 5.5493 - 4.8512 1.00 3014 160 0.1922 0.2839 REMARK 3 4 4.8512 - 4.4091 1.00 3012 142 0.1651 0.2115 REMARK 3 5 4.4091 - 4.0940 1.00 2982 155 0.1755 0.2227 REMARK 3 6 4.0940 - 3.8531 1.00 2951 160 0.1848 0.2671 REMARK 3 7 3.8531 - 3.6605 1.00 3001 140 0.2045 0.3048 REMARK 3 8 3.6605 - 3.5014 0.99 2932 193 0.2302 0.3169 REMARK 3 9 3.5014 - 3.3668 0.97 2897 140 0.2448 0.3653 REMARK 3 10 3.3668 - 3.2508 0.88 2593 151 0.2694 0.3604 REMARK 3 11 3.2508 - 3.1492 0.66 1938 104 0.2695 0.3272 REMARK 3 12 3.1492 - 3.0593 0.39 1139 70 0.2868 0.4116 REMARK 3 13 3.0593 - 2.9788 0.19 562 32 0.2694 0.3190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 10180 REMARK 3 ANGLE : 0.931 13823 REMARK 3 CHIRALITY : 0.035 1617 REMARK 3 PLANARITY : 0.005 1826 REMARK 3 DIHEDRAL : 16.369 3765 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40826 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EK9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 100MM NACL, 0.5%, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 123.42350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 123.42350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.83800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 123.42350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 123.42350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.83800 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 123.42350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 123.42350 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.83800 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 123.42350 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 123.42350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.83800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 428 REMARK 465 PRO A 429 REMARK 465 GLU A 430 REMARK 465 THR A 431 REMARK 465 PRO A 432 REMARK 465 ASP A 433 REMARK 465 GLN A 434 REMARK 465 ASP A 435 REMARK 465 ALA A 436 REMARK 465 ALA A 437 REMARK 465 ALA A 438 REMARK 465 ASP A 439 REMARK 465 GLY A 440 REMARK 465 TYR A 441 REMARK 465 ASN A 442 REMARK 465 ALA A 443 REMARK 465 HIS A 444 REMARK 465 SER A 445 REMARK 465 ALA A 446 REMARK 465 ALA A 447 REMARK 465 PRO A 448 REMARK 465 ALA A 449 REMARK 465 VAL A 450 REMARK 465 GLN A 451 REMARK 465 PRO A 452 REMARK 465 THR A 453 REMARK 465 ALA A 454 REMARK 465 ALA A 455 REMARK 465 ARG A 456 REMARK 465 ALA A 457 REMARK 465 ASN A 458 REMARK 465 SER A 459 REMARK 465 ASN A 460 REMARK 465 ASN A 461 REMARK 465 GLY A 462 REMARK 465 ASN A 463 REMARK 465 PRO A 464 REMARK 465 PHE A 465 REMARK 465 ARG A 466 REMARK 465 HIS A 467 REMARK 465 SER B 426 REMARK 465 VAL B 427 REMARK 465 ALA B 428 REMARK 465 PRO B 429 REMARK 465 GLU B 430 REMARK 465 THR B 431 REMARK 465 PRO B 432 REMARK 465 ASP B 433 REMARK 465 GLN B 434 REMARK 465 ASP B 435 REMARK 465 ALA B 436 REMARK 465 ALA B 437 REMARK 465 ALA B 438 REMARK 465 ASP B 439 REMARK 465 GLY B 440 REMARK 465 TYR B 441 REMARK 465 ASN B 442 REMARK 465 ALA B 443 REMARK 465 HIS B 444 REMARK 465 SER B 445 REMARK 465 ALA B 446 REMARK 465 ALA B 447 REMARK 465 PRO B 448 REMARK 465 ALA B 449 REMARK 465 VAL B 450 REMARK 465 GLN B 451 REMARK 465 PRO B 452 REMARK 465 THR B 453 REMARK 465 ALA B 454 REMARK 465 ALA B 455 REMARK 465 ARG B 456 REMARK 465 ALA B 457 REMARK 465 ASN B 458 REMARK 465 SER B 459 REMARK 465 ASN B 460 REMARK 465 ASN B 461 REMARK 465 GLY B 462 REMARK 465 ASN B 463 REMARK 465 PRO B 464 REMARK 465 PHE B 465 REMARK 465 ARG B 466 REMARK 465 HIS B 467 REMARK 465 GLN C 434 REMARK 465 ASP C 435 REMARK 465 ALA C 436 REMARK 465 ALA C 437 REMARK 465 ALA C 438 REMARK 465 ASP C 439 REMARK 465 GLY C 440 REMARK 465 TYR C 441 REMARK 465 ASN C 442 REMARK 465 ALA C 443 REMARK 465 HIS C 444 REMARK 465 SER C 445 REMARK 465 ALA C 446 REMARK 465 ALA C 447 REMARK 465 PRO C 448 REMARK 465 ALA C 449 REMARK 465 VAL C 450 REMARK 465 GLN C 451 REMARK 465 PRO C 452 REMARK 465 THR C 453 REMARK 465 ALA C 454 REMARK 465 ALA C 455 REMARK 465 ARG C 456 REMARK 465 ALA C 457 REMARK 465 ASN C 458 REMARK 465 SER C 459 REMARK 465 ASN C 460 REMARK 465 ASN C 461 REMARK 465 GLY C 462 REMARK 465 ASN C 463 REMARK 465 PRO C 464 REMARK 465 PHE C 465 REMARK 465 ARG C 466 REMARK 465 HIS C 467 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD LYS A 265 OH TYR A 271 1.84 REMARK 500 O ARG A 55 OD1 ASN A 58 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 271 N - CA - C ANGL. DEV. = 28.2 DEGREES REMARK 500 ASP A 272 N - CA - C ANGL. DEV. = 32.8 DEGREES REMARK 500 THR A 422 N - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 SER C 257 CB - CA - C ANGL. DEV. = 11.6 DEGREES REMARK 500 PRO C 424 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 ALA C 428 N - CA - C ANGL. DEV. = 22.5 DEGREES REMARK 500 PRO C 429 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 PRO C 429 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 PRO C 432 C - N - CD ANGL. DEV. = -16.3 DEGREES REMARK 500 PRO C 432 N - CA - C ANGL. DEV. = 21.5 DEGREES REMARK 500 ASP C 433 C - N - CA ANGL. DEV. = 28.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -9.87 -147.46 REMARK 500 SER A 51 -163.10 -127.99 REMARK 500 ASN A 52 173.48 174.03 REMARK 500 TYR A 54 20.10 -152.35 REMARK 500 ARG A 55 -113.95 -133.41 REMARK 500 ALA A 57 99.37 -62.90 REMARK 500 SER A 62 -144.59 -165.94 REMARK 500 ASN A 63 -171.46 174.38 REMARK 500 LEU A 69 74.71 -153.09 REMARK 500 SER A 262 -111.75 -135.14 REMARK 500 LYS A 265 -59.07 -136.82 REMARK 500 THR A 266 176.96 173.49 REMARK 500 ASP A 272 -145.95 163.96 REMARK 500 ASP A 273 116.19 -38.00 REMARK 500 ASN A 275 38.36 -150.00 REMARK 500 GLN A 291 68.26 -115.40 REMARK 500 SER A 423 123.18 -35.05 REMARK 500 GLU A 425 56.03 -106.62 REMARK 500 ARG B 55 -141.08 54.40 REMARK 500 ALA B 57 40.99 -99.54 REMARK 500 ASN B 63 120.28 -170.51 REMARK 500 SER B 68 108.93 -168.23 REMARK 500 ASN B 145 8.36 -67.80 REMARK 500 SER B 253 132.79 -171.91 REMARK 500 SER B 257 77.38 -161.61 REMARK 500 SER B 264 -87.51 -93.01 REMARK 500 THR B 266 49.32 -98.31 REMARK 500 SER B 274 -163.40 -120.25 REMARK 500 ASN B 275 38.23 -155.82 REMARK 500 ASN B 279 65.08 -111.00 REMARK 500 TYR B 377 23.59 -75.90 REMARK 500 LEU B 412 40.97 -75.22 REMARK 500 SER B 423 -167.06 -122.12 REMARK 500 PRO B 424 127.86 -34.57 REMARK 500 LEU C 38 30.47 -98.93 REMARK 500 ASN C 52 88.57 -159.12 REMARK 500 ARG C 55 -112.43 -102.06 REMARK 500 ASN C 63 86.06 -155.37 REMARK 500 THR C 65 142.55 -176.39 REMARK 500 HIS C 200 34.31 -81.15 REMARK 500 ILE C 256 -179.27 -67.22 REMARK 500 SER C 257 133.54 -175.99 REMARK 500 SER C 268 -172.34 -66.72 REMARK 500 ASN C 275 54.63 -116.23 REMARK 500 MET C 276 106.90 -54.17 REMARK 500 ALA C 411 7.90 -68.95 REMARK 500 SER C 423 177.55 174.02 REMARK 500 SER C 426 125.07 -173.09 REMARK 500 GLU C 430 -73.48 -80.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 264 LYS A 265 -146.32 REMARK 500 LYS A 265 THR A 266 -141.00 REMARK 500 PRO A 424 GLU A 425 140.12 REMARK 500 SER C 68 LEU C 69 149.15 REMARK 500 SER C 423 PRO C 424 -142.84 REMARK 500 PRO C 432 ASP C 433 -130.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. DBREF 5BUN A 1 467 PDB 5BUN 5BUN 1 467 DBREF 5BUN B 1 467 PDB 5BUN 5BUN 1 467 DBREF 5BUN C 1 467 PDB 5BUN 5BUN 1 467 SEQRES 1 A 467 GLU ASN LEU MET GLN VAL TYR GLN GLN ALA ARG LEU SER SEQRES 2 A 467 ASN PRO GLU LEU ARG LYS SER ALA ALA ASP ARG ASP ALA SEQRES 3 A 467 ALA PHE GLU LYS ILE ASN GLU ALA ARG SER PRO LEU LEU SEQRES 4 A 467 PRO GLN LEU GLY LEU GLY ALA ASP TYR THR TYR SER ASN SEQRES 5 A 467 GLY TYR ARG ASP ALA ASN GLY ILE ASN SER ASN GLU THR SEQRES 6 A 467 SER ALA SER LEU GLN LEU THR GLN THR LEU PHE ASP MET SEQRES 7 A 467 SER LYS TRP ARG GLY LEU THR LEU GLN GLU LYS ALA ALA SEQRES 8 A 467 GLY ILE GLN ASP VAL THR TYR GLN THR ASP GLN GLN THR SEQRES 9 A 467 LEU ILE LEU ASN THR ALA ASN ALA TYR PHE LYS VAL LEU SEQRES 10 A 467 ASN ALA ILE ASP VAL LEU SER TYR THR GLN ALA GLN LYS SEQRES 11 A 467 GLU ALA ILE TYR ARG GLN LEU ASP GLN THR THR GLN ARG SEQRES 12 A 467 PHE ASN VAL GLY LEU VAL ALA ILE THR ASP VAL GLN ASN SEQRES 13 A 467 ALA ARG ALA GLN TYR ASP THR VAL LEU ALA ASN GLU VAL SEQRES 14 A 467 THR ALA ARG ASN ASN LEU ASP ASN ALA VAL GLU GLU LEU SEQRES 15 A 467 ARG GLN VAL THR GLY ASN TYR TYR PRO GLU LEU ALA SER SEQRES 16 A 467 LEU ASN VAL GLU HIS PHE LYS THR ASP LYS PRO LYS ALA SEQRES 17 A 467 VAL ASN ALA LEU LEU LYS GLU ALA GLU ASN ARG ASN LEU SEQRES 18 A 467 SER LEU LEU GLN ALA ARG LEU SER GLN ASP LEU ALA ARG SEQRES 19 A 467 GLU GLN ILE ARG GLN ALA GLN ASP GLY HIS LEU PRO THR SEQRES 20 A 467 LEU ASN LEU THR ALA SER THR GLY ILE SER ASP THR SER SEQRES 21 A 467 TYR SER GLY SER LYS THR ASN SER THR GLN TYR ASP ASP SEQRES 22 A 467 SER ASN MET GLY GLN ASN LYS ILE GLY LEU ASN PHE SER SEQRES 23 A 467 LEU PRO LEU TYR GLN GLY GLY MET VAL ASN SER GLN VAL SEQRES 24 A 467 LYS GLN ALA GLN TYR ASN PHE VAL GLY ALA SER GLU GLN SEQRES 25 A 467 LEU GLU SER ALA HIS ARG SER VAL VAL GLN THR VAL ARG SEQRES 26 A 467 SER SER PHE ASN ASN ILE ASN ALA SER ILE SER SER ILE SEQRES 27 A 467 ASN ALA TYR LYS GLN ALA VAL VAL SER ALA GLN SER SER SEQRES 28 A 467 LEU ASP ALA MET GLU ALA GLY TYR SER VAL GLY THR ARG SEQRES 29 A 467 THR ILE VAL ASP VAL LEU ASP ALA THR THR THR LEU TYR SEQRES 30 A 467 ASP ALA LYS GLN GLN LEU ALA ASN ALA ARG TYR THR TYR SEQRES 31 A 467 LEU ILE ASN GLN LEU ASN ILE LYS TYR ALA LEU GLY THR SEQRES 32 A 467 LEU ASN GLU GLN ASP LEU LEU ALA LEU ASN SER THR LEU SEQRES 33 A 467 GLY LYS PRO ILE PRO THR SER PRO GLU SER VAL ALA PRO SEQRES 34 A 467 GLU THR PRO ASP GLN ASP ALA ALA ALA ASP GLY TYR ASN SEQRES 35 A 467 ALA HIS SER ALA ALA PRO ALA VAL GLN PRO THR ALA ALA SEQRES 36 A 467 ARG ALA ASN SER ASN ASN GLY ASN PRO PHE ARG HIS SEQRES 1 B 467 GLU ASN LEU MET GLN VAL TYR GLN GLN ALA ARG LEU SER SEQRES 2 B 467 ASN PRO GLU LEU ARG LYS SER ALA ALA ASP ARG ASP ALA SEQRES 3 B 467 ALA PHE GLU LYS ILE ASN GLU ALA ARG SER PRO LEU LEU SEQRES 4 B 467 PRO GLN LEU GLY LEU GLY ALA ASP TYR THR TYR SER ASN SEQRES 5 B 467 GLY TYR ARG ASP ALA ASN GLY ILE ASN SER ASN GLU THR SEQRES 6 B 467 SER ALA SER LEU GLN LEU THR GLN THR LEU PHE ASP MET SEQRES 7 B 467 SER LYS TRP ARG GLY LEU THR LEU GLN GLU LYS ALA ALA SEQRES 8 B 467 GLY ILE GLN ASP VAL THR TYR GLN THR ASP GLN GLN THR SEQRES 9 B 467 LEU ILE LEU ASN THR ALA ASN ALA TYR PHE LYS VAL LEU SEQRES 10 B 467 ASN ALA ILE ASP VAL LEU SER TYR THR GLN ALA GLN LYS SEQRES 11 B 467 GLU ALA ILE TYR ARG GLN LEU ASP GLN THR THR GLN ARG SEQRES 12 B 467 PHE ASN VAL GLY LEU VAL ALA ILE THR ASP VAL GLN ASN SEQRES 13 B 467 ALA ARG ALA GLN TYR ASP THR VAL LEU ALA ASN GLU VAL SEQRES 14 B 467 THR ALA ARG ASN ASN LEU ASP ASN ALA VAL GLU GLU LEU SEQRES 15 B 467 ARG GLN VAL THR GLY ASN TYR TYR PRO GLU LEU ALA SER SEQRES 16 B 467 LEU ASN VAL GLU HIS PHE LYS THR ASP LYS PRO LYS ALA SEQRES 17 B 467 VAL ASN ALA LEU LEU LYS GLU ALA GLU ASN ARG ASN LEU SEQRES 18 B 467 SER LEU LEU GLN ALA ARG LEU SER GLN ASP LEU ALA ARG SEQRES 19 B 467 GLU GLN ILE ARG GLN ALA GLN ASP GLY HIS LEU PRO THR SEQRES 20 B 467 LEU ASN LEU THR ALA SER THR GLY ILE SER ASP THR SER SEQRES 21 B 467 TYR SER GLY SER LYS THR ASN SER THR GLN TYR ASP ASP SEQRES 22 B 467 SER ASN MET GLY GLN ASN LYS ILE GLY LEU ASN PHE SER SEQRES 23 B 467 LEU PRO LEU TYR GLN GLY GLY MET VAL ASN SER GLN VAL SEQRES 24 B 467 LYS GLN ALA GLN TYR ASN PHE VAL GLY ALA SER GLU GLN SEQRES 25 B 467 LEU GLU SER ALA HIS ARG SER VAL VAL GLN THR VAL ARG SEQRES 26 B 467 SER SER PHE ASN ASN ILE ASN ALA SER ILE SER SER ILE SEQRES 27 B 467 ASN ALA TYR LYS GLN ALA VAL VAL SER ALA GLN SER SER SEQRES 28 B 467 LEU ASP ALA MET GLU ALA GLY TYR SER VAL GLY THR ARG SEQRES 29 B 467 THR ILE VAL ASP VAL LEU ASP ALA THR THR THR LEU TYR SEQRES 30 B 467 ASP ALA LYS GLN GLN LEU ALA ASN ALA ARG TYR THR TYR SEQRES 31 B 467 LEU ILE ASN GLN LEU ASN ILE LYS TYR ALA LEU GLY THR SEQRES 32 B 467 LEU ASN GLU GLN ASP LEU LEU ALA LEU ASN SER THR LEU SEQRES 33 B 467 GLY LYS PRO ILE PRO THR SER PRO GLU SER VAL ALA PRO SEQRES 34 B 467 GLU THR PRO ASP GLN ASP ALA ALA ALA ASP GLY TYR ASN SEQRES 35 B 467 ALA HIS SER ALA ALA PRO ALA VAL GLN PRO THR ALA ALA SEQRES 36 B 467 ARG ALA ASN SER ASN ASN GLY ASN PRO PHE ARG HIS SEQRES 1 C 467 GLU ASN LEU MET GLN VAL TYR GLN GLN ALA ARG LEU SER SEQRES 2 C 467 ASN PRO GLU LEU ARG LYS SER ALA ALA ASP ARG ASP ALA SEQRES 3 C 467 ALA PHE GLU LYS ILE ASN GLU ALA ARG SER PRO LEU LEU SEQRES 4 C 467 PRO GLN LEU GLY LEU GLY ALA ASP TYR THR TYR SER ASN SEQRES 5 C 467 GLY TYR ARG ASP ALA ASN GLY ILE ASN SER ASN GLU THR SEQRES 6 C 467 SER ALA SER LEU GLN LEU THR GLN THR LEU PHE ASP MET SEQRES 7 C 467 SER LYS TRP ARG GLY LEU THR LEU GLN GLU LYS ALA ALA SEQRES 8 C 467 GLY ILE GLN ASP VAL THR TYR GLN THR ASP GLN GLN THR SEQRES 9 C 467 LEU ILE LEU ASN THR ALA ASN ALA TYR PHE LYS VAL LEU SEQRES 10 C 467 ASN ALA ILE ASP VAL LEU SER TYR THR GLN ALA GLN LYS SEQRES 11 C 467 GLU ALA ILE TYR ARG GLN LEU ASP GLN THR THR GLN ARG SEQRES 12 C 467 PHE ASN VAL GLY LEU VAL ALA ILE THR ASP VAL GLN ASN SEQRES 13 C 467 ALA ARG ALA GLN TYR ASP THR VAL LEU ALA ASN GLU VAL SEQRES 14 C 467 THR ALA ARG ASN ASN LEU ASP ASN ALA VAL GLU GLU LEU SEQRES 15 C 467 ARG GLN VAL THR GLY ASN TYR TYR PRO GLU LEU ALA SER SEQRES 16 C 467 LEU ASN VAL GLU HIS PHE LYS THR ASP LYS PRO LYS ALA SEQRES 17 C 467 VAL ASN ALA LEU LEU LYS GLU ALA GLU ASN ARG ASN LEU SEQRES 18 C 467 SER LEU LEU GLN ALA ARG LEU SER GLN ASP LEU ALA ARG SEQRES 19 C 467 GLU GLN ILE ARG GLN ALA GLN ASP GLY HIS LEU PRO THR SEQRES 20 C 467 LEU ASN LEU THR ALA SER THR GLY ILE SER ASP THR SER SEQRES 21 C 467 TYR SER GLY SER LYS THR ASN SER THR GLN TYR ASP ASP SEQRES 22 C 467 SER ASN MET GLY GLN ASN LYS ILE GLY LEU ASN PHE SER SEQRES 23 C 467 LEU PRO LEU TYR GLN GLY GLY MET VAL ASN SER GLN VAL SEQRES 24 C 467 LYS GLN ALA GLN TYR ASN PHE VAL GLY ALA SER GLU GLN SEQRES 25 C 467 LEU GLU SER ALA HIS ARG SER VAL VAL GLN THR VAL ARG SEQRES 26 C 467 SER SER PHE ASN ASN ILE ASN ALA SER ILE SER SER ILE SEQRES 27 C 467 ASN ALA TYR LYS GLN ALA VAL VAL SER ALA GLN SER SER SEQRES 28 C 467 LEU ASP ALA MET GLU ALA GLY TYR SER VAL GLY THR ARG SEQRES 29 C 467 THR ILE VAL ASP VAL LEU ASP ALA THR THR THR LEU TYR SEQRES 30 C 467 ASP ALA LYS GLN GLN LEU ALA ASN ALA ARG TYR THR TYR SEQRES 31 C 467 LEU ILE ASN GLN LEU ASN ILE LYS TYR ALA LEU GLY THR SEQRES 32 C 467 LEU ASN GLU GLN ASP LEU LEU ALA LEU ASN SER THR LEU SEQRES 33 C 467 GLY LYS PRO ILE PRO THR SER PRO GLU SER VAL ALA PRO SEQRES 34 C 467 GLU THR PRO ASP GLN ASP ALA ALA ALA ASP GLY TYR ASN SEQRES 35 C 467 ALA HIS SER ALA ALA PRO ALA VAL GLN PRO THR ALA ALA SEQRES 36 C 467 ARG ALA ASN SER ASN ASN GLY ASN PRO PHE ARG HIS HET BOG A1001 20 HET BOG A1002 20 HET BOG B 501 20 HET BOG C 501 20 HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 4 BOG 4(C14 H28 O6) FORMUL 8 HOH *2(H2 O) HELIX 1 AA1 ASN A 2 LEU A 12 1 11 HELIX 2 AA2 ASN A 14 LYS A 30 1 17 HELIX 3 AA3 LYS A 30 SER A 36 1 7 HELIX 4 AA4 PRO A 37 LEU A 39 5 3 HELIX 5 AA5 ASP A 77 VAL A 146 1 70 HELIX 6 AA6 ALA A 150 GLY A 187 1 38 HELIX 7 AA7 ALA A 208 ASN A 220 1 13 HELIX 8 AA8 ASN A 220 ASP A 242 1 23 HELIX 9 AA9 GLY A 293 SER A 360 1 68 HELIX 10 AB1 THR A 365 GLY A 402 1 38 HELIX 11 AB2 ASN A 405 ALA A 411 1 7 HELIX 12 AB3 LEU A 412 SER A 414 5 3 HELIX 13 AB4 ASN B 2 ASN B 14 1 13 HELIX 14 AB5 ASN B 14 GLU B 29 1 16 HELIX 15 AB6 LYS B 30 SER B 36 1 7 HELIX 16 AB7 PRO B 37 LEU B 39 5 3 HELIX 17 AB8 LYS B 80 ARG B 143 1 64 HELIX 18 AB9 ALA B 150 GLY B 187 1 38 HELIX 19 AC1 ALA B 208 ASN B 220 1 13 HELIX 20 AC2 ASN B 220 ASP B 242 1 23 HELIX 21 AC3 GLY B 243 LEU B 245 5 3 HELIX 22 AC4 GLY B 293 SER B 360 1 68 HELIX 23 AC5 THR B 365 LEU B 401 1 37 HELIX 24 AC6 ASN B 405 LEU B 412 1 8 HELIX 25 AC7 ASN C 2 LEU C 12 1 11 HELIX 26 AC8 ASN C 14 LYS C 30 1 17 HELIX 27 AC9 LYS C 30 ARG C 35 1 6 HELIX 28 AD1 SER C 36 LEU C 39 5 4 HELIX 29 AD2 ASP C 77 VAL C 146 1 70 HELIX 30 AD3 ILE C 151 GLY C 187 1 37 HELIX 31 AD4 ALA C 208 ASN C 220 1 13 HELIX 32 AD5 ASN C 220 ASP C 242 1 23 HELIX 33 AD6 GLY C 293 VAL C 361 1 69 HELIX 34 AD7 THR C 365 LEU C 401 1 37 HELIX 35 AD8 ASN C 405 ALA C 411 1 7 SHEET 1 AA1 8 GLY B 45 ALA B 46 0 SHEET 2 AA1 8 LEU A 283 SER A 286 -1 N PHE A 285 O ALA B 46 SHEET 3 AA1 8 THR A 247 LEU A 250 -1 N ASN A 249 O ASN A 284 SHEET 4 AA1 8 GLN A 70 PHE A 76 -1 N GLN A 73 O LEU A 250 SHEET 5 AA1 8 GLN A 41 ASP A 47 -1 N GLN A 41 O THR A 72 SHEET 6 AA1 8 ASN C 279 GLN C 291 -1 O TYR C 290 N LEU A 42 SHEET 7 AA1 8 THR C 247 THR C 254 -1 N THR C 247 O SER C 286 SHEET 8 AA1 8 GLN C 70 LEU C 71 -1 N LEU C 71 O ALA C 252 SHEET 1 AA2 9 SER B 62 THR B 65 0 SHEET 2 AA2 9 TYR B 48 ARG B 55 -1 N THR B 49 O GLU B 64 SHEET 3 AA2 9 SER A 274 LYS A 280 -1 N ASN A 279 O ASN B 52 SHEET 4 AA2 9 SER A 253 THR A 259 -1 N SER A 253 O LYS A 280 SHEET 5 AA2 9 THR A 65 ALA A 67 -1 N ALA A 67 O ILE A 256 SHEET 6 AA2 9 GLN A 41 ASP A 47 -1 N ASP A 47 O SER A 66 SHEET 7 AA2 9 ASN C 279 GLN C 291 -1 O TYR C 290 N LEU A 42 SHEET 8 AA2 9 THR C 247 THR C 254 -1 N THR C 247 O SER C 286 SHEET 9 AA2 9 THR C 74 PHE C 76 -1 N LEU C 75 O LEU C 248 SHEET 1 AA3 2 LEU A 193 LEU A 196 0 SHEET 2 AA3 2 LEU A 416 ILE A 420 -1 O LYS A 418 N SER A 195 SHEET 1 AA4 6 TYR A 290 GLN A 291 0 SHEET 2 AA4 6 GLN B 41 LEU B 42 -1 O LEU B 42 N TYR A 290 SHEET 3 AA4 6 ALA B 67 PHE B 76 -1 O THR B 72 N GLN B 41 SHEET 4 AA4 6 THR B 247 ILE B 256 -1 O ILE B 256 N ALA B 67 SHEET 5 AA4 6 ASN B 279 GLN B 291 -1 O LYS B 280 N SER B 253 SHEET 6 AA4 6 GLN C 41 ASP C 47 -1 O ALA C 46 N PHE B 285 SHEET 1 AA5 2 GLU B 192 LEU B 196 0 SHEET 2 AA5 2 LEU B 416 PRO B 421 -1 O LYS B 418 N SER B 195 SHEET 1 AA6 2 GLU C 192 LEU C 196 0 SHEET 2 AA6 2 LEU C 416 PRO C 421 -1 O ILE C 420 N LEU C 193 SHEET 1 AA7 2 THR C 259 SER C 260 0 SHEET 2 AA7 2 ASP C 273 SER C 274 -1 O SER C 274 N THR C 259 CISPEP 1 SER A 268 THR A 269 0 29.90 CISPEP 2 SER A 423 PRO A 424 0 5.11 CISPEP 3 SER A 426 VAL A 427 0 -4.97 CISPEP 4 PRO B 424 GLU B 425 0 -4.58 CISPEP 5 GLU C 425 SER C 426 0 -2.44 CISPEP 6 GLU C 430 THR C 431 0 12.27 CRYST1 246.847 246.847 65.676 90.00 90.00 90.00 I 4 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004051 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015226 0.00000