HEADER HYDROLASE 04-JUN-15 5BV9 TITLE THE STRUCTURE OF BACILLUS PUMILUS GH48 IN COMPLEX WITH CELLOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE 1,4-BETA-CELLOBIOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.91; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PUMILUS; SOURCE 3 ORGANISM_TAXID: 315750; SOURCE 4 STRAIN: SAFR-032; SOURCE 5 GENE: CELB, BPUM_1559; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GH48, CELLULASE, CELLOBIOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.ALAHUHTA,V.V.LUNIN REVDAT 6 27-SEP-23 5BV9 1 HETSYN REVDAT 5 29-JUL-20 5BV9 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 04-DEC-19 5BV9 1 REMARK REVDAT 3 05-JUN-19 5BV9 1 JRNL REVDAT 2 06-SEP-17 5BV9 1 REMARK REVDAT 1 30-SEP-15 5BV9 0 JRNL AUTH M.CHEN,L.BU,M.ALAHUHTA,R.BRUNECKY,Q.XU,V.V.LUNIN,J.W.BRADY, JRNL AUTH 2 M.F.CROWLEY,M.E.HIMMEL,Y.J.BOMBLE JRNL TITL STRATEGIES TO REDUCE END-PRODUCT INHIBITION IN FAMILY 48 JRNL TITL 2 GLYCOSIDE HYDROLASES. JRNL REF PROTEINS V. 84 295 2016 JRNL REFN ESSN 1097-0134 JRNL PMID 26572060 JRNL DOI 10.1002/PROT.24965 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 74971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5469 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 282 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.749 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5972 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5180 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8135 ; 1.912 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11959 ; 1.108 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 727 ; 6.799 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 303 ;38.338 ;24.620 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 866 ;14.050 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 799 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7021 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1489 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2878 ; 1.534 ; 1.524 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2871 ; 1.512 ; 1.516 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3611 ; 2.276 ; 2.271 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3612 ; 2.278 ; 2.273 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3094 ; 2.404 ; 1.752 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3094 ; 2.403 ; 1.752 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4525 ; 3.728 ; 2.538 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8368 ; 6.750 ;14.190 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7790 ; 5.721 ;13.327 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79431 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.720 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17130 REMARK 200 FOR THE DATA SET : 9.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.93 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1G9G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE, PH 5.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.05400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.64550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.64550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 163.58100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.64550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.64550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.52700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.64550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.64550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 163.58100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.64550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.64550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.52700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.05400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1462 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 703 REMARK 465 HIS A 704 REMARK 465 HIS A 705 REMARK 465 HIS A 706 REMARK 465 HIS A 707 REMARK 465 HIS A 708 REMARK 465 HIS A 709 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 421 CD ARG A 421 NE -0.109 REMARK 500 GLU A 468 CG GLU A 468 CD 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 355 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 355 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 399 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 421 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 421 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 421 NE - CZ - NH2 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 565 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 582 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 628 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 38 -43.69 -162.46 REMARK 500 ALA A 39 -60.91 -141.43 REMARK 500 ASP A 88 -104.01 115.24 REMARK 500 THR A 175 -86.39 -123.51 REMARK 500 GLN A 177 7.00 -160.00 REMARK 500 ASN A 202 -10.43 76.24 REMARK 500 ARG A 221 115.67 -166.79 REMARK 500 ASN A 245 39.98 -151.30 REMARK 500 ASN A 379 12.73 57.89 REMARK 500 VAL A 402 -57.02 74.94 REMARK 500 LEU A 481 70.08 -109.37 REMARK 500 ALA A 493 67.99 -153.42 REMARK 500 ASP A 530 65.10 64.39 REMARK 500 GLU A 602 16.04 -149.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 39 PRO A 40 149.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1837 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1838 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1839 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1840 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1841 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1842 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1843 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1844 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A1845 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1846 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A1847 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A1848 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A1849 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A1850 DISTANCE = 8.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 79 O REMARK 620 2 ILE A 83 O 82.3 REMARK 620 3 VAL A 85 O 100.8 90.4 REMARK 620 4 GLU A 92 OE1 175.1 93.8 76.2 REMARK 620 5 HOH A1096 O 117.1 90.1 141.8 65.6 REMARK 620 6 HOH A1487 O 110.7 167.0 88.5 73.3 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 181 O REMARK 620 2 GLN A 181 OE1 88.0 REMARK 620 3 GLU A 186 OE1 81.7 151.8 REMARK 620 4 GLU A 186 OE2 77.4 152.0 49.7 REMARK 620 5 ASP A 405 OD2 111.3 86.7 121.6 76.8 REMARK 620 6 HOH A1187 O 166.0 97.8 87.3 102.0 81.9 REMARK 620 7 HOH A1501 O 85.5 82.0 71.1 119.9 159.4 82.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 246 OD1 REMARK 620 2 THR A 248 OG1 80.1 REMARK 620 3 HOH A1390 O 74.7 90.9 REMARK 620 4 HOH A1552 O 100.5 85.2 174.4 REMARK 620 5 HOH A1615 O 85.3 165.4 86.0 96.7 REMARK 620 6 HOH A1773 O 147.0 123.1 81.4 104.2 70.5 REMARK 620 7 HOH A1773 O 149.4 90.5 76.4 107.7 102.5 32.8 REMARK 620 N 1 2 3 4 5 6 DBREF 5BV9 A 1 701 UNP A8FDC4 A8FDC4_BACP2 1 701 SEQADV 5BV9 LEU A 702 UNP A8FDC4 EXPRESSION TAG SEQADV 5BV9 GLU A 703 UNP A8FDC4 EXPRESSION TAG SEQADV 5BV9 HIS A 704 UNP A8FDC4 EXPRESSION TAG SEQADV 5BV9 HIS A 705 UNP A8FDC4 EXPRESSION TAG SEQADV 5BV9 HIS A 706 UNP A8FDC4 EXPRESSION TAG SEQADV 5BV9 HIS A 707 UNP A8FDC4 EXPRESSION TAG SEQADV 5BV9 HIS A 708 UNP A8FDC4 EXPRESSION TAG SEQADV 5BV9 HIS A 709 UNP A8FDC4 EXPRESSION TAG SEQRES 1 A 709 MET SER ASN LYS GLU ARG PHE LEU THR LEU TYR HIS GLN SEQRES 2 A 709 ILE LYS SER ASP ALA ASN GLY TYR PHE SER PRO GLU GLY SEQRES 3 A 709 ILE PRO TYR HIS SER ILE GLU THR LEU ILE CYS GLU ALA SEQRES 4 A 709 PRO ASP TYR GLY HIS MET THR THR SER GLU ALA TYR SER SEQRES 5 A 709 TYR TRP LEU TRP LEU GLU VAL LEU TYR GLY HIS TYR THR SEQRES 6 A 709 ARG ASP TRP SER LYS LEU GLU ALA ALA TRP ASP ASN MET SEQRES 7 A 709 GLU LYS TYR ILE ILE PRO VAL ASN GLU ASP GLY ASN ASP SEQRES 8 A 709 GLU GLN PRO HIS MET SER ALA TYR ASN PRO SER SER PRO SEQRES 9 A 709 ALA THR TYR ALA SER GLU LYS PRO TYR PRO ASP GLN TYR SEQRES 10 A 709 PRO SER GLN LEU SER GLY ALA ARG PRO ALA GLY GLN ASP SEQRES 11 A 709 PRO ILE ASP GLY GLU LEU LYS SER THR TYR GLY THR ASN SEQRES 12 A 709 GLU THR TYR LEU MET HIS TRP LEU LEU ASP VAL ASP ASN SEQRES 13 A 709 TRP TYR LYS TYR GLY ASN LEU LEU ASN PRO SER HIS LYS SEQRES 14 A 709 ALA ALA TYR VAL ASN THR PHE GLN ARG GLY GLN GLN GLU SEQRES 15 A 709 SER VAL TRP GLU ALA ILE PRO HIS PRO SER GLN ASP ASP SEQRES 16 A 709 LYS SER PHE GLY LYS PRO ASN GLU GLY PHE MET SER LEU SEQRES 17 A 709 PHE THR LYS GLU ASN GLN VAL PRO ALA ALA GLN TRP ARG SEQRES 18 A 709 TYR THR ASN ALA THR ASP ALA ASP ALA ARG ALA ILE GLN SEQRES 19 A 709 ALA ILE TYR TRP ALA LYS GLU LEU GLY TYR ASN ASN SER SEQRES 20 A 709 THR TYR LEU ASP LYS ALA LYS LYS MET GLY ASP PHE LEU SEQRES 21 A 709 ARG TYR GLY MET TYR ASP LYS TYR PHE GLN THR ILE GLY SEQRES 22 A 709 SER GLY LYS GLN GLY ASN PRO TYR PRO GLY ASN GLY LYS SEQRES 23 A 709 GLY ALA CYS HIS TYR LEU MET ALA TRP TYR THR SER TRP SEQRES 24 A 709 GLY GLY GLY LEU GLY ASP TYR ALA ASN TRP SER TRP ARG SEQRES 25 A 709 ILE GLY ALA SER HIS CYS HIS GLN GLY TYR GLN ASN PRO SEQRES 26 A 709 VAL ALA ALA TYR ALA LEU SER SER ASP LYS GLY GLY LEU SEQRES 27 A 709 LYS PRO SER SER ALA THR GLY ALA SER ASP TRP GLU LYS SEQRES 28 A 709 THR LEU LYS ARG GLN LEU GLU PHE TYR VAL TRP LEU GLN SEQRES 29 A 709 SER LYS GLU GLY ALA ILE ALA GLY GLY ALA THR ASN SER SEQRES 30 A 709 TRP ASN GLY ASP TYR SER ALA TYR PRO ALA GLY ARG SER SEQRES 31 A 709 THR PHE TYR ASP MET ALA TYR GLU ASP ALA PRO VAL TYR SEQRES 32 A 709 HIS ASP PRO PRO SER ASN ASN TRP PHE GLY MET GLN ALA SEQRES 33 A 709 TRP PRO MET GLU ARG VAL ALA GLU LEU TYR TYR ILE PHE SEQRES 34 A 709 VAL LYS ASP GLY ASP LYS THR SER GLU ASN VAL GLN MET SEQRES 35 A 709 ALA LYS SER CYS ILE THR LYS TRP VAL ASN TYR ALA LEU SEQRES 36 A 709 ASP TYR ILE PHE ILE GLY SER ARG PRO VAL SER ASP GLU SEQRES 37 A 709 GLU GLY TYR PHE LEU ASP ASP GLN GLY ARG ARG ILE LEU SEQRES 38 A 709 GLY GLY THR ASN ALA THR VAL ALA THR THR SER ALA PRO SEQRES 39 A 709 GLY GLU PHE TRP LEU PRO GLY ASN ILE ALA TRP SER GLY SEQRES 40 A 709 GLN PRO ASP THR TRP ASN GLY PHE GLN SER ALA THR GLY SEQRES 41 A 709 ASN PRO ASN LEU THR ALA VAL THR LYS ASP PRO THR GLN SEQRES 42 A 709 ASP THR GLY VAL LEU GLY SER LEU VAL LYS ALA PHE THR SEQRES 43 A 709 PHE PHE ALA ALA ALA THR LYS LEU GLU THR GLY ASN TYR SEQRES 44 A 709 THR ALA LEU GLY VAL ARG ALA LYS ASP ALA ALA ALA GLN SEQRES 45 A 709 LEU LEU GLU VAL ALA TRP ASN TYR ASN ASP GLY VAL GLY SEQRES 46 A 709 ILE VAL THR GLU GLU GLU ARG GLU ASP TYR ASP ARG PHE SEQRES 47 A 709 PHE LYS LYS GLU VAL TYR PHE PRO ASN GLY TRP ASN GLY SEQRES 48 A 709 THR PHE GLY GLN GLY ASN GLN ILE PRO GLY SER SER THR SEQRES 49 A 709 ILE PRO SER ASP PRO GLN ARG GLY GLY ASN GLY VAL TYR SEQRES 50 A 709 THR SER PHE ALA ASP LEU ARG PRO ASN ILE LYS GLN ASP SEQRES 51 A 709 PRO ALA TRP SER SER LEU GLU SER LYS TYR GLN SER SER SEQRES 52 A 709 PHE ASN GLU ALA THR GLY LYS TRP GLU ASN GLY ALA PRO SEQRES 53 A 709 VAL PHE THR TYR HIS ARG PHE TRP SER GLN VAL ASP MET SEQRES 54 A 709 ALA THR ALA TYR ALA GLU TYR HIS ARG LEU ILE ASN LEU SEQRES 55 A 709 GLU HIS HIS HIS HIS HIS HIS HET BGC B 1 12 HET BGC B 2 11 HET CA A 801 1 HET CA A 802 1 HET CA A 803 1 HET MLI A 805 7 HET MLI A 806 7 HET EDO A 807 4 HET EDO A 808 4 HET EDO A 809 4 HET ACT A 810 4 HET ACT A 811 4 HET ACT A 812 4 HET ACT A 813 4 HET ACT A 814 4 HET ACT A 815 4 HET GOL A 816 6 HET GOL A 817 6 HET GOL A 818 12 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM MLI MALONATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BGC 2(C6 H12 O6) FORMUL 3 CA 3(CA 2+) FORMUL 6 MLI 2(C3 H2 O4 2-) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 11 ACT 6(C2 H3 O2 1-) FORMUL 17 GOL 3(C3 H8 O3) FORMUL 20 HOH *950(H2 O) HELIX 1 AA1 SER A 2 SER A 16 1 15 HELIX 2 AA2 SER A 48 ARG A 66 1 19 HELIX 3 AA3 TRP A 68 ILE A 82 1 15 HELIX 4 AA4 HIS A 95 TYR A 99 5 5 HELIX 5 AA5 TYR A 113 TYR A 117 5 5 HELIX 6 AA6 ILE A 132 GLY A 141 1 10 HELIX 7 AA7 SER A 183 ALA A 187 5 5 HELIX 8 AA8 PHE A 205 LEU A 208 5 4 HELIX 9 AA9 ALA A 225 LEU A 242 1 18 HELIX 10 AB1 ASN A 246 ARG A 261 1 16 HELIX 11 AB2 TYR A 262 TYR A 265 5 4 HELIX 12 AB3 GLY A 321 GLN A 323 5 3 HELIX 13 AB4 ASN A 324 SER A 333 1 10 HELIX 14 AB5 THR A 344 LEU A 363 1 20 HELIX 15 AB6 SER A 377 ASP A 381 5 5 HELIX 16 AB7 PHE A 412 ASP A 432 1 21 HELIX 17 AB8 SER A 437 ASP A 456 1 20 HELIX 18 AB9 GLY A 514 ALA A 518 5 5 HELIX 19 AC1 ASP A 534 GLY A 557 1 24 HELIX 20 AC2 THR A 560 ASN A 579 1 20 HELIX 21 AC3 GLU A 593 PHE A 599 5 7 HELIX 22 AC4 ASP A 628 GLY A 632 5 5 HELIX 23 AC5 PHE A 640 ARG A 644 1 5 HELIX 24 AC6 PRO A 645 ASP A 650 5 6 HELIX 25 AC7 ALA A 652 SER A 663 1 12 HELIX 26 AC8 ARG A 682 ILE A 700 1 19 SHEET 1 AA1 4 MET A 45 THR A 47 0 SHEET 2 AA1 4 LEU A 151 ASP A 153 -1 O LEU A 152 N THR A 46 SHEET 3 AA1 4 ALA A 171 ASN A 174 -1 O ALA A 171 N ASP A 153 SHEET 4 AA1 4 HIS A 190 PRO A 191 -1 O HIS A 190 N ASN A 174 SHEET 1 AA2 2 SER A 119 GLN A 120 0 SHEET 2 AA2 2 THR A 210 LYS A 211 1 O LYS A 211 N SER A 119 SHEET 1 AA3 4 GLN A 193 ASP A 194 0 SHEET 2 AA3 4 GLN A 219 THR A 223 -1 O GLN A 219 N ASP A 194 SHEET 3 AA3 4 SER A 298 GLY A 302 -1 O GLY A 301 N TRP A 220 SHEET 4 AA3 4 SER A 310 ILE A 313 -1 O TRP A 311 N GLY A 300 SHEET 1 AA4 4 HIS A 317 HIS A 319 0 SHEET 2 AA4 4 GLY A 373 THR A 375 -1 O ALA A 374 N CYS A 318 SHEET 3 AA4 4 MET A 395 GLU A 398 -1 O GLU A 398 N GLY A 373 SHEET 4 AA4 4 THR A 391 PHE A 392 -1 N PHE A 392 O MET A 395 SHEET 1 AA5 2 PHE A 459 PRO A 464 0 SHEET 2 AA5 2 THR A 490 TRP A 498 -1 O GLU A 496 N GLY A 461 SHEET 1 AA6 2 ASN A 502 GLY A 507 0 SHEET 2 AA6 2 LEU A 524 LYS A 529 -1 O LYS A 529 N ASN A 502 SHEET 1 AA7 2 GLU A 589 GLU A 591 0 SHEET 2 AA7 2 VAL A 677 THR A 679 -1 O PHE A 678 N GLU A 590 SHEET 1 AA8 3 LYS A 601 PRO A 606 0 SHEET 2 AA8 3 GLY A 635 SER A 639 -1 O THR A 638 N VAL A 603 SHEET 3 AA8 3 ILE A 625 PRO A 626 -1 N ILE A 625 O TYR A 637 SHEET 1 AA9 2 GLY A 611 THR A 612 0 SHEET 2 AA9 2 GLN A 618 ILE A 619 -1 O ILE A 619 N GLY A 611 SHEET 1 AB1 2 PHE A 664 ASN A 665 0 SHEET 2 AB1 2 LYS A 670 TRP A 671 -1 O LYS A 670 N ASN A 665 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.42 LINK O GLU A 79 CA CA A 802 1555 1555 2.44 LINK O ILE A 83 CA CA A 802 1555 1555 2.36 LINK O VAL A 85 CA CA A 802 1555 1555 2.78 LINK OE1 GLU A 92 CA CA A 802 1555 1555 3.05 LINK O GLN A 181 CA CA A 801 1555 1555 2.39 LINK OE1 GLN A 181 CA CA A 801 1555 1555 2.33 LINK OE1 GLU A 186 CA CA A 801 1555 1555 2.65 LINK OE2 GLU A 186 CA CA A 801 1555 1555 2.45 LINK OD1 ASN A 246 CA CA A 803 1555 1555 2.62 LINK OG1 THR A 248 CA CA A 803 1555 1555 2.49 LINK OD2 ASP A 405 CA CA A 801 1555 1555 2.35 LINK CA CA A 801 O HOH A1187 1555 1555 2.29 LINK CA CA A 801 O HOH A1501 1555 1555 2.62 LINK CA CA A 802 O HOH A1096 1555 1555 2.70 LINK CA CA A 802 O AHOH A1487 1555 1555 2.17 LINK CA CA A 803 O HOH A1390 1555 1555 2.16 LINK CA CA A 803 O HOH A1552 1555 1555 2.27 LINK CA CA A 803 O HOH A1615 1555 1555 2.37 LINK CA CA A 803 O AHOH A1773 1555 1555 2.48 LINK CA CA A 803 O BHOH A1773 1555 1555 2.88 CISPEP 1 TYR A 117 PRO A 118 0 10.48 CISPEP 2 ASP A 405 PRO A 406 0 -0.27 CISPEP 3 ILE A 619 PRO A 620 0 1.58 CRYST1 97.291 97.291 218.108 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004585 0.00000