HEADER DE NOVO PROTEIN 04-JUN-15 5BVB TITLE ENGINEERED DIGOXIGENIN BINDER DIG5.1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIG5.1A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS ENGINEERED, COMPUTATIONALLY DESIGNED, DESIGNED, LIGAND BINDER, KEYWDS 2 DIGOXIGENIN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.A.DOYLE,B.L.STODDARD REVDAT 4 27-SEP-23 5BVB 1 REMARK REVDAT 3 11-OCT-17 5BVB 1 REMARK REVDAT 2 13-JUL-16 5BVB 1 JRNL REVDAT 1 28-OCT-15 5BVB 0 JRNL AUTH R.D.SMITH,K.L.DAMM-GANAMET,J.B.DUNBAR,A.AHMED,K.CHINNASWAMY, JRNL AUTH 2 J.E.DELPROPOSTO,G.M.KUBISH,C.E.TINBERG,S.D.KHARE,J.DOU, JRNL AUTH 3 L.DOYLE,J.A.STUCKEY,D.BAKER,H.A.CARLSON JRNL TITL CSAR BENCHMARK EXERCISE 2013: EVALUATION OF RESULTS FROM A JRNL TITL 2 COMBINED COMPUTATIONAL PROTEIN DESIGN, DOCKING, AND JRNL TITL 3 SCORING/RANKING CHALLENGE. JRNL REF J.CHEM.INF.MODEL. V. 56 1022 2016 JRNL REFN ESSN 1549-960X JRNL PMID 26419257 JRNL DOI 10.1021/ACS.JCIM.5B00387 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC 5.8.0049 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 32939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1672 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 1Z1S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS REMARK 280 PH5.5, 22.5% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.31150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -31.91936 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -66.07522 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLU B 126 REMARK 465 ALA B 127 REMARK 465 ALA B 128 REMARK 465 GLY B 129 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 LEU D 125 REMARK 465 GLU D 126 REMARK 465 ALA D 127 REMARK 465 ALA D 128 REMARK 465 GLY D 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CE REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 PRO A 39 CG CD REMARK 470 LYS A 42 CD CE NZ REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 ARG A 56 CZ NH1 NH2 REMARK 470 LEU A 57 CG CD1 CD2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ARG A 65 NH1 REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LYS A 96 CD CE NZ REMARK 470 GLN A 111 CG CD OE1 NE2 REMARK 470 LEU A 122 CD1 REMARK 470 ARG A 123 NE CZ NH1 NH2 REMARK 470 SER B 0 OG REMARK 470 ARG B 12 CD NE CZ NH1 NH2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 ARG B 44 CZ NH1 NH2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ARG B 56 CZ NH1 NH2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 ARG B 65 NE CZ NH1 NH2 REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 470 VAL B 92 CG1 REMARK 470 LYS B 96 CE NZ REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 123 NH2 REMARK 470 LEU B 125 CD1 CD2 REMARK 470 SER C 0 OG REMARK 470 LYS C 4 CD CE NZ REMARK 470 ILE C 6 CG1 CD1 REMARK 470 ARG C 12 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 13 CD2 REMARK 470 GLU C 29 CG CD OE1 OE2 REMARK 470 TRP C 41 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 41 CZ3 CH2 REMARK 470 LYS C 42 CG CD CE NZ REMARK 470 ARG C 44 CD NE CZ NH1 NH2 REMARK 470 GLU C 46 CG CD OE1 OE2 REMARK 470 GLU C 49 CG CD OE1 OE2 REMARK 470 LEU C 57 CD2 REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 ARG C 65 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 68 CG OD1 OD2 REMARK 470 GLN C 70 CD OE1 NE2 REMARK 470 GLU C 73 CG CD OE1 OE2 REMARK 470 THR C 91 CG2 REMARK 470 VAL C 92 CG1 CG2 REMARK 470 SER C 93 OG REMARK 470 LYS C 96 CE NZ REMARK 470 ARG C 108 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 109 OD1 REMARK 470 LEU C 122 CD1 CD2 REMARK 470 ARG C 123 NH2 REMARK 470 LEU C 125 CD1 REMARK 470 SER D -1 OG REMARK 470 MET D 1 CE REMARK 470 ILE D 6 CG1 CD1 REMARK 470 ARG D 12 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 20 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 29 CG CD OE1 OE2 REMARK 470 PRO D 39 CG CD REMARK 470 TRP D 41 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 41 CZ3 CH2 REMARK 470 LYS D 42 CG CD CE NZ REMARK 470 THR D 43 CG2 REMARK 470 ARG D 44 NH1 NH2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 GLU D 49 CG CD OE1 OE2 REMARK 470 THR D 50 OG1 CG2 REMARK 470 TRP D 52 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 52 CZ3 CH2 REMARK 470 HIS D 54 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 56 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 57 CG CD1 CD2 REMARK 470 HIS D 58 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 60 CG CD OE1 OE2 REMARK 470 HIS D 61 CG ND1 CD2 CE1 NE2 REMARK 470 GLN D 70 CD OE1 NE2 REMARK 470 GLU D 73 CG CD OE1 OE2 REMARK 470 LYS D 96 NZ REMARK 470 TYR D 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 108 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 109 CG OD1 OD2 REMARK 470 ARG D 123 CZ NH1 NH2 REMARK 470 ILE D 124 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR D 101 H12O DOG D 201 0.86 REMARK 500 HH TYR C 101 H12O DOG C 201 0.94 REMARK 500 HH TYR D 72 OE2 GLU D 83 1.60 REMARK 500 NH2 ARG A 20 O HOH A 301 2.11 REMARK 500 OE2 GLU A 33 NH1 ARG A 44 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 110 C GLY A 110 O -0.103 REMARK 500 TRP B 41 CB TRP B 41 CG -0.109 REMARK 500 TYR C 34 CE1 TYR C 34 CZ 0.108 REMARK 500 TRP C 52 CG TRP C 52 CD1 0.090 REMARK 500 GLU D 15 CD GLU D 15 OE1 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP A 76 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 87 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 PRO C 39 C - N - CD ANGL. DEV. = 12.8 DEGREES REMARK 500 MET C 55 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP C 87 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG C 123 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG D 65 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 67 -165.70 -79.15 REMARK 500 SER D -1 0.73 -64.39 REMARK 500 HIS D 27 151.52 -43.48 REMARK 500 GLU D 60 126.57 -36.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DOG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DOG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DOG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DOG D 201 DBREF 5BVB A -2 129 PDB 5BVB 5BVB -2 129 DBREF 5BVB B -2 129 PDB 5BVB 5BVB -2 129 DBREF 5BVB C -2 129 PDB 5BVB 5BVB -2 129 DBREF 5BVB D -2 129 PDB 5BVB 5BVB -2 129 SEQRES 1 A 132 GLY SER SER MET ASN ALA LYS GLU ILE LEU VAL HIS SER SEQRES 2 A 132 LEU ARG LEU LEU GLU ASN GLY ASP ALA ARG GLY TRP CYS SEQRES 3 A 132 ASP LEU PHE HIS PRO GLU GLY VAL LEU GLU TYR PRO TYR SEQRES 4 A 132 ALA PRO PRO GLY TRP LYS THR ARG PHE GLU GLY ARG GLU SEQRES 5 A 132 THR ILE TRP ALA HIS MET ARG LEU HIS PRO GLU HIS VAL SEQRES 6 A 132 THR TRP ARG PHE THR ASP VAL GLN PHE TYR GLU THR ALA SEQRES 7 A 132 ASP PRO ASP LEU ALA ILE GLY GLU TYR HIS GLY ASP GLY SEQRES 8 A 132 VAL VAL THR VAL SER GLY GLY LYS TYR ALA ALA ASP TYR SEQRES 9 A 132 ILE THR VAL LEU ARG THR ARG ASP GLY GLN ILE LEU LEU SEQRES 10 A 132 LEU ARG VAL PHE TRP ASN PRO LEU ARG ILE LEU GLU ALA SEQRES 11 A 132 ALA GLY SEQRES 1 B 132 GLY SER SER MET ASN ALA LYS GLU ILE LEU VAL HIS SER SEQRES 2 B 132 LEU ARG LEU LEU GLU ASN GLY ASP ALA ARG GLY TRP CYS SEQRES 3 B 132 ASP LEU PHE HIS PRO GLU GLY VAL LEU GLU TYR PRO TYR SEQRES 4 B 132 ALA PRO PRO GLY TRP LYS THR ARG PHE GLU GLY ARG GLU SEQRES 5 B 132 THR ILE TRP ALA HIS MET ARG LEU HIS PRO GLU HIS VAL SEQRES 6 B 132 THR TRP ARG PHE THR ASP VAL GLN PHE TYR GLU THR ALA SEQRES 7 B 132 ASP PRO ASP LEU ALA ILE GLY GLU TYR HIS GLY ASP GLY SEQRES 8 B 132 VAL VAL THR VAL SER GLY GLY LYS TYR ALA ALA ASP TYR SEQRES 9 B 132 ILE THR VAL LEU ARG THR ARG ASP GLY GLN ILE LEU LEU SEQRES 10 B 132 LEU ARG VAL PHE TRP ASN PRO LEU ARG ILE LEU GLU ALA SEQRES 11 B 132 ALA GLY SEQRES 1 C 132 GLY SER SER MET ASN ALA LYS GLU ILE LEU VAL HIS SER SEQRES 2 C 132 LEU ARG LEU LEU GLU ASN GLY ASP ALA ARG GLY TRP CYS SEQRES 3 C 132 ASP LEU PHE HIS PRO GLU GLY VAL LEU GLU TYR PRO TYR SEQRES 4 C 132 ALA PRO PRO GLY TRP LYS THR ARG PHE GLU GLY ARG GLU SEQRES 5 C 132 THR ILE TRP ALA HIS MET ARG LEU HIS PRO GLU HIS VAL SEQRES 6 C 132 THR TRP ARG PHE THR ASP VAL GLN PHE TYR GLU THR ALA SEQRES 7 C 132 ASP PRO ASP LEU ALA ILE GLY GLU TYR HIS GLY ASP GLY SEQRES 8 C 132 VAL VAL THR VAL SER GLY GLY LYS TYR ALA ALA ASP TYR SEQRES 9 C 132 ILE THR VAL LEU ARG THR ARG ASP GLY GLN ILE LEU LEU SEQRES 10 C 132 LEU ARG VAL PHE TRP ASN PRO LEU ARG ILE LEU GLU ALA SEQRES 11 C 132 ALA GLY SEQRES 1 D 132 GLY SER SER MET ASN ALA LYS GLU ILE LEU VAL HIS SER SEQRES 2 D 132 LEU ARG LEU LEU GLU ASN GLY ASP ALA ARG GLY TRP CYS SEQRES 3 D 132 ASP LEU PHE HIS PRO GLU GLY VAL LEU GLU TYR PRO TYR SEQRES 4 D 132 ALA PRO PRO GLY TRP LYS THR ARG PHE GLU GLY ARG GLU SEQRES 5 D 132 THR ILE TRP ALA HIS MET ARG LEU HIS PRO GLU HIS VAL SEQRES 6 D 132 THR TRP ARG PHE THR ASP VAL GLN PHE TYR GLU THR ALA SEQRES 7 D 132 ASP PRO ASP LEU ALA ILE GLY GLU TYR HIS GLY ASP GLY SEQRES 8 D 132 VAL VAL THR VAL SER GLY GLY LYS TYR ALA ALA ASP TYR SEQRES 9 D 132 ILE THR VAL LEU ARG THR ARG ASP GLY GLN ILE LEU LEU SEQRES 10 D 132 LEU ARG VAL PHE TRP ASN PRO LEU ARG ILE LEU GLU ALA SEQRES 11 D 132 ALA GLY HET DOG A 201 62 HET DOG B 201 62 HET DOG C 201 62 HET DOG D 201 62 HETNAM DOG DIGOXIGENIN HETSYN DOG 4-(3,12,14-TRIHYDROXY-10,13-DIMETHYL-HEXADECAHYDRO- HETSYN 2 DOG CYCLOPENTA[A]PHENANTHREN-17-YL)-5H-FURAN-2-ONE FORMUL 5 DOG 4(C23 H34 O5) FORMUL 9 HOH *187(H2 O) HELIX 1 AA1 ASN A 2 ASN A 16 1 15 HELIX 2 AA2 ASP A 18 LEU A 25 1 8 HELIX 3 AA3 GLY A 47 ARG A 56 1 10 HELIX 4 AA4 PRO A 121 GLY A 129 1 9 HELIX 5 AA5 ASN B 2 ASN B 16 1 15 HELIX 6 AA6 ASP B 18 LEU B 25 1 8 HELIX 7 AA7 GLY B 47 ARG B 56 1 10 HELIX 8 AA8 ASN B 120 ILE B 124 5 5 HELIX 9 AA9 ASN C 2 ASN C 16 1 15 HELIX 10 AB1 ASP C 18 LEU C 25 1 8 HELIX 11 AB2 GLY C 47 ARG C 56 1 10 HELIX 12 AB3 PRO C 121 GLY C 129 1 9 HELIX 13 AB4 ASN D 2 ASN D 16 1 15 HELIX 14 AB5 ASP D 18 ASP D 24 1 7 HELIX 15 AB6 GLY D 47 LEU D 57 1 11 HELIX 16 AB7 ASN D 120 ILE D 124 5 5 SHEET 1 AA1 6 ARG A 44 GLU A 46 0 SHEET 2 AA1 6 PHE A 26 GLU A 33 -1 N LEU A 32 O PHE A 45 SHEET 3 AA1 6 GLN A 111 PHE A 118 1 O VAL A 117 N GLU A 33 SHEET 4 AA1 6 LYS A 96 ARG A 108 -1 N ARG A 106 O LEU A 114 SHEET 5 AA1 6 LEU A 79 VAL A 90 -1 N TYR A 84 O TYR A 101 SHEET 6 AA1 6 VAL A 62 PHE A 66 -1 N THR A 63 O VAL A 89 SHEET 1 AA2 6 ARG A 44 GLU A 46 0 SHEET 2 AA2 6 PHE A 26 GLU A 33 -1 N LEU A 32 O PHE A 45 SHEET 3 AA2 6 GLN A 111 PHE A 118 1 O VAL A 117 N GLU A 33 SHEET 4 AA2 6 LYS A 96 ARG A 108 -1 N ARG A 106 O LEU A 114 SHEET 5 AA2 6 LEU A 79 VAL A 90 -1 N TYR A 84 O TYR A 101 SHEET 6 AA2 6 GLN A 70 PHE A 71 -1 N GLN A 70 O GLU A 83 SHEET 1 AA3 6 ARG B 44 GLU B 46 0 SHEET 2 AA3 6 PHE B 26 GLU B 33 -1 N LEU B 32 O PHE B 45 SHEET 3 AA3 6 GLN B 111 PHE B 118 1 O VAL B 117 N GLU B 33 SHEET 4 AA3 6 LYS B 96 ARG B 108 -1 N VAL B 104 O ARG B 116 SHEET 5 AA3 6 LEU B 79 VAL B 90 -1 N TYR B 84 O TYR B 101 SHEET 6 AA3 6 VAL B 62 PHE B 66 -1 N THR B 63 O VAL B 89 SHEET 1 AA4 6 ARG B 44 GLU B 46 0 SHEET 2 AA4 6 PHE B 26 GLU B 33 -1 N LEU B 32 O PHE B 45 SHEET 3 AA4 6 GLN B 111 PHE B 118 1 O VAL B 117 N GLU B 33 SHEET 4 AA4 6 LYS B 96 ARG B 108 -1 N VAL B 104 O ARG B 116 SHEET 5 AA4 6 LEU B 79 VAL B 90 -1 N TYR B 84 O TYR B 101 SHEET 6 AA4 6 GLN B 70 TYR B 72 -1 N TYR B 72 O ILE B 81 SHEET 1 AA5 6 ARG C 44 GLU C 46 0 SHEET 2 AA5 6 PHE C 26 GLU C 33 -1 N LEU C 32 O PHE C 45 SHEET 3 AA5 6 GLN C 111 PHE C 118 1 O VAL C 117 N GLU C 33 SHEET 4 AA5 6 LYS C 96 ARG C 108 -1 N VAL C 104 O ARG C 116 SHEET 5 AA5 6 LEU C 79 VAL C 90 -1 N GLY C 86 O ALA C 99 SHEET 6 AA5 6 VAL C 62 PHE C 66 -1 N THR C 63 O VAL C 89 SHEET 1 AA6 6 ARG C 44 GLU C 46 0 SHEET 2 AA6 6 PHE C 26 GLU C 33 -1 N LEU C 32 O PHE C 45 SHEET 3 AA6 6 GLN C 111 PHE C 118 1 O VAL C 117 N GLU C 33 SHEET 4 AA6 6 LYS C 96 ARG C 108 -1 N VAL C 104 O ARG C 116 SHEET 5 AA6 6 LEU C 79 VAL C 90 -1 N GLY C 86 O ALA C 99 SHEET 6 AA6 6 GLN C 70 TYR C 72 -1 N TYR C 72 O ILE C 81 SHEET 1 AA7 6 ARG D 44 GLU D 46 0 SHEET 2 AA7 6 PHE D 26 GLU D 33 -1 N LEU D 32 O PHE D 45 SHEET 3 AA7 6 GLN D 111 PHE D 118 1 O LEU D 115 N GLU D 33 SHEET 4 AA7 6 LYS D 96 ARG D 108 -1 N VAL D 104 O ARG D 116 SHEET 5 AA7 6 LEU D 79 VAL D 90 -1 N GLY D 86 O ALA D 99 SHEET 6 AA7 6 VAL D 62 PHE D 66 -1 N THR D 63 O VAL D 89 SHEET 1 AA8 6 ARG D 44 GLU D 46 0 SHEET 2 AA8 6 PHE D 26 GLU D 33 -1 N LEU D 32 O PHE D 45 SHEET 3 AA8 6 GLN D 111 PHE D 118 1 O LEU D 115 N GLU D 33 SHEET 4 AA8 6 LYS D 96 ARG D 108 -1 N VAL D 104 O ARG D 116 SHEET 5 AA8 6 LEU D 79 VAL D 90 -1 N GLY D 86 O ALA D 99 SHEET 6 AA8 6 GLN D 70 PHE D 71 -1 N GLN D 70 O GLU D 83 SITE 1 AC1 12 LEU A 11 LEU A 14 TYR A 34 TRP A 41 SITE 2 AC1 12 MET A 55 HIS A 58 TRP A 64 TYR A 84 SITE 3 AC1 12 TYR A 101 TRP A 119 ALA C 128 GLY C 129 SITE 1 AC2 13 LEU B 11 LEU B 14 TRP B 22 TYR B 34 SITE 2 AC2 13 MET B 55 TRP B 64 TYR B 84 TYR B 101 SITE 3 AC2 13 TRP B 119 HOH B 312 THR D 91 VAL D 92 SITE 4 AC2 13 GLY D 94 SITE 1 AC3 11 ALA A 128 GLY A 129 LEU C 11 LEU C 14 SITE 2 AC3 11 TYR C 34 MET C 55 TRP C 64 TYR C 84 SITE 3 AC3 11 TYR C 101 TRP C 119 HOH C 303 SITE 1 AC4 5 LEU D 11 TYR D 34 TYR D 84 TYR D 101 SITE 2 AC4 5 TRP D 119 CRYST1 60.732 68.623 72.084 90.00 113.56 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016466 0.000000 0.007179 0.00000 SCALE2 0.000000 0.014572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015134 0.00000