HEADER TRANSFERASE 05-JUN-15 5BW4 TITLE CRYSTAL STRUCTURE OF THE 16S RRNA (ADENINE(1408)-N(1))- TITLE 2 METHYLTRANSFERASE W203A MUTANT WITH COSUBSTRATE SAM FROM TITLE 3 CATENULISPORALES ACIDIPHILIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16S RRNA (ADENINE(1408)-N(1))-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CATENULISPORA ACIDIPHILA; SOURCE 3 ORGANISM_TAXID: 479433; SOURCE 4 STRAIN: DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897; SOURCE 5 GENE: CACI_9046; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, RIBOSOME, AMINOGLYCOSIDE RESISTANCE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.WITEK,G.L.CONN REVDAT 5 27-SEP-23 5BW4 1 REMARK REVDAT 4 11-DEC-19 5BW4 1 REMARK REVDAT 3 22-NOV-17 5BW4 1 REMARK REVDAT 2 06-SEP-17 5BW4 1 JRNL REMARK REVDAT 1 20-APR-16 5BW4 0 JRNL AUTH M.A.WITEK,G.L.CONN JRNL TITL FUNCTIONAL DICHOTOMY IN THE 16S RRNA (M1A1408) JRNL TITL 2 METHYLTRANSFERASE FAMILY AND CONTROL OF CATALYTIC ACTIVITY JRNL TITL 3 VIA A NOVEL TRYPTOPHAN MEDIATED LOOP REORGANIZATION. JRNL REF NUCLEIC ACIDS RES. V. 44 342 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26609134 JRNL DOI 10.1093/NAR/GKV1306 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 27026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1909 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3210 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3330 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3324 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4563 ; 2.009 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7635 ; 0.915 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 6.808 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;33.703 ;22.931 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;15.490 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.911 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3661 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 663 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 3.031 ; 2.955 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1719 ; 3.031 ; 2.955 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2140 ; 4.365 ; 4.386 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2141 ; 4.364 ; 4.390 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1611 ; 4.490 ; 3.670 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1612 ; 4.489 ; 3.671 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2424 ; 7.016 ; 5.271 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3606 ; 9.081 ;24.882 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3596 ; 9.088 ;24.829 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5640 -18.6670 3.4040 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0450 REMARK 3 T33: 0.0334 T12: -0.0068 REMARK 3 T13: 0.0407 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.8108 L22: 1.0100 REMARK 3 L33: 3.7797 L12: -0.7040 REMARK 3 L13: 2.1328 L23: -0.7145 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: 0.2752 S13: -0.1126 REMARK 3 S21: -0.0747 S22: -0.0537 S23: -0.0464 REMARK 3 S31: 0.1503 S32: 0.1910 S33: 0.1209 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 229 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4150 -19.1900 43.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.0803 T22: 0.1581 REMARK 3 T33: 0.0177 T12: 0.0598 REMARK 3 T13: 0.0049 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 2.8065 L22: 2.1934 REMARK 3 L33: 3.8757 L12: 0.7333 REMARK 3 L13: -1.2409 L23: -1.7322 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.5153 S13: -0.0850 REMARK 3 S21: 0.2057 S22: -0.1227 S23: -0.1174 REMARK 3 S31: -0.1033 S32: 0.1026 S33: 0.2000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BW4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000205456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.4-1496 REMARK 200 STARTING MODEL: PDB ENTRY 4X1O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.85 M AMMONIUM SULFATE, 0.08 M TRIS, REMARK 280 PH 8.5, 3.5% DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.85900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.93600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.61450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.93600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.85900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.61450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 ALA A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 THR A 194 REMARK 465 ASP A 195 REMARK 465 LEU A 196 REMARK 465 ASP A 197 REMARK 465 THR A 198 REMARK 465 ILE A 199 REMARK 465 SER A 200 REMARK 465 SER A 201 REMARK 465 SER A 202 REMARK 465 ALA A 203 REMARK 465 ALA A 204 REMARK 465 ARG A 205 REMARK 465 ARG A 206 REMARK 465 LEU A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 GLY A 210 REMARK 465 ALA A 211 REMARK 465 PRO A 228 REMARK 465 VAL A 229 REMARK 465 GLY A 230 REMARK 465 THR A 231 REMARK 465 GLN A 232 REMARK 465 HIS A 233 REMARK 465 PRO A 234 REMARK 465 ALA A 235 REMARK 465 ALA A 236 REMARK 465 GLU A 237 REMARK 465 SER A 238 REMARK 465 ALA A 239 REMARK 465 GLN A 240 REMARK 465 ASP A 241 REMARK 465 THR A 242 REMARK 465 PRO A 243 REMARK 465 GLU A 244 REMARK 465 GLU A 245 REMARK 465 PRO A 246 REMARK 465 GLN A 247 REMARK 465 ARG A 248 REMARK 465 ASP A 249 REMARK 465 VAL A 250 REMARK 465 MET B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 ALA B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ARG B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 GLY B 230 REMARK 465 THR B 231 REMARK 465 GLN B 232 REMARK 465 HIS B 233 REMARK 465 PRO B 234 REMARK 465 ALA B 235 REMARK 465 ALA B 236 REMARK 465 GLU B 237 REMARK 465 SER B 238 REMARK 465 ALA B 239 REMARK 465 GLN B 240 REMARK 465 ASP B 241 REMARK 465 THR B 242 REMARK 465 PRO B 243 REMARK 465 GLU B 244 REMARK 465 GLU B 245 REMARK 465 PRO B 246 REMARK 465 GLN B 247 REMARK 465 ARG B 248 REMARK 465 ASP B 249 REMARK 465 VAL B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 150 CE3 TRP A 150 CZ3 -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 192 9.46 -61.74 REMARK 500 SER B 91 148.93 -173.33 REMARK 500 ASP B 187 136.13 -171.06 REMARK 500 THR B 198 178.83 -55.59 REMARK 500 ILE B 199 -29.24 -21.91 REMARK 500 SER B 200 100.15 -48.14 REMARK 500 ARG B 205 -30.05 -32.95 REMARK 500 ARG B 206 34.82 -70.51 REMARK 500 ARG B 226 44.79 -102.98 REMARK 500 PRO B 228 150.14 -48.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BW5 RELATED DB: PDB DBREF 5BW4 A 1 250 UNP C7Q5P8 C7Q5P8_CATAD 1 250 DBREF 5BW4 B 1 250 UNP C7Q5P8 C7Q5P8_CATAD 1 250 SEQADV 5BW4 MET A -16 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS A -15 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS A -14 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS A -13 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS A -12 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS A -11 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS A -10 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 ALA A -9 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 SER A -8 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 GLY A -7 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 LEU A -6 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 VAL A -5 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 PRO A -4 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 ARG A -3 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 GLY A -2 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 SER A -1 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS A 0 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 ALA A 203 UNP C7Q5P8 TRP 203 ENGINEERED MUTATION SEQADV 5BW4 MET B -16 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS B -15 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS B -14 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS B -13 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS B -12 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS B -11 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS B -10 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 ALA B -9 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 SER B -8 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 GLY B -7 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 LEU B -6 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 VAL B -5 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 PRO B -4 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 ARG B -3 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 GLY B -2 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 SER B -1 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 HIS B 0 UNP C7Q5P8 EXPRESSION TAG SEQADV 5BW4 ALA B 203 UNP C7Q5P8 TRP 203 ENGINEERED MUTATION SEQRES 1 A 267 MET HIS HIS HIS HIS HIS HIS ALA SER GLY LEU VAL PRO SEQRES 2 A 267 ARG GLY SER HIS MET THR ARG THR THR ALA LEU LYS VAL SEQRES 3 A 267 LEU ALA GLY LYS LYS LEU THR ASP LEU ASP PRO ASP GLU SEQRES 4 A 267 TRP ALA LYS ALA GLN ALA SER ALA GLU ARG ILE LEU VAL SEQRES 5 A 267 ASP VAL GLY THR GLY ASP ALA ARG THR ALA TYR ARG GLN SEQRES 6 A 267 ALA ILE ALA HIS PRO GLU TRP LEU VAL VAL GLY VAL ASP SEQRES 7 A 267 PRO ALA TRP GLN ARG MET THR GLU THR ALA VAL ARG ALA SEQRES 8 A 267 ALA ARG LYS PRO ALA LYS GLY GLY ALA PRO ASN LEU VAL SEQRES 9 A 267 LEU VAL SER SER ALA ILE GLU THR VAL PRO ALA ALA LEU SEQRES 10 A 267 HIS GLY VAL ALA ASP GLU VAL MET VAL LEU MET PRO TRP SEQRES 11 A 267 GLY LYS LEU LEU ARG GLY VAL VAL LEU GLY GLU ALA ASP SEQRES 12 A 267 VAL LEU SER GLY LEU ARG ALA VAL ALA LYS PRO GLY ALA SEQRES 13 A 267 PRO LEU GLU ILE SER ILE GLY THR SER ILE TRP ARG GLU SEQRES 14 A 267 PRO ILE PRO LEU GLU ILE ARG ASP LEU PRO GLU LEU THR SEQRES 15 A 267 PRO GLU THR VAL VAL SER THR GLY LEU THR ASP ARG LEU SEQRES 16 A 267 ALA ALA LEU GLY TRP GLN VAL ALA ASP VAL ARG LEU VAL SEQRES 17 A 267 PRO HIS THR ASP LEU ASP THR ILE SER SER SER ALA ALA SEQRES 18 A 267 ARG ARG LEU GLY SER GLY ALA THR GLU THR VAL LEU HIS SEQRES 19 A 267 LEU ARG ALA VAL ALA VAL ASP PRO ARG ASP PRO VAL GLY SEQRES 20 A 267 THR GLN HIS PRO ALA ALA GLU SER ALA GLN ASP THR PRO SEQRES 21 A 267 GLU GLU PRO GLN ARG ASP VAL SEQRES 1 B 267 MET HIS HIS HIS HIS HIS HIS ALA SER GLY LEU VAL PRO SEQRES 2 B 267 ARG GLY SER HIS MET THR ARG THR THR ALA LEU LYS VAL SEQRES 3 B 267 LEU ALA GLY LYS LYS LEU THR ASP LEU ASP PRO ASP GLU SEQRES 4 B 267 TRP ALA LYS ALA GLN ALA SER ALA GLU ARG ILE LEU VAL SEQRES 5 B 267 ASP VAL GLY THR GLY ASP ALA ARG THR ALA TYR ARG GLN SEQRES 6 B 267 ALA ILE ALA HIS PRO GLU TRP LEU VAL VAL GLY VAL ASP SEQRES 7 B 267 PRO ALA TRP GLN ARG MET THR GLU THR ALA VAL ARG ALA SEQRES 8 B 267 ALA ARG LYS PRO ALA LYS GLY GLY ALA PRO ASN LEU VAL SEQRES 9 B 267 LEU VAL SER SER ALA ILE GLU THR VAL PRO ALA ALA LEU SEQRES 10 B 267 HIS GLY VAL ALA ASP GLU VAL MET VAL LEU MET PRO TRP SEQRES 11 B 267 GLY LYS LEU LEU ARG GLY VAL VAL LEU GLY GLU ALA ASP SEQRES 12 B 267 VAL LEU SER GLY LEU ARG ALA VAL ALA LYS PRO GLY ALA SEQRES 13 B 267 PRO LEU GLU ILE SER ILE GLY THR SER ILE TRP ARG GLU SEQRES 14 B 267 PRO ILE PRO LEU GLU ILE ARG ASP LEU PRO GLU LEU THR SEQRES 15 B 267 PRO GLU THR VAL VAL SER THR GLY LEU THR ASP ARG LEU SEQRES 16 B 267 ALA ALA LEU GLY TRP GLN VAL ALA ASP VAL ARG LEU VAL SEQRES 17 B 267 PRO HIS THR ASP LEU ASP THR ILE SER SER SER ALA ALA SEQRES 18 B 267 ARG ARG LEU GLY SER GLY ALA THR GLU THR VAL LEU HIS SEQRES 19 B 267 LEU ARG ALA VAL ALA VAL ASP PRO ARG ASP PRO VAL GLY SEQRES 20 B 267 THR GLN HIS PRO ALA ALA GLU SER ALA GLN ASP THR PRO SEQRES 21 B 267 GLU GLU PRO GLN ARG ASP VAL HET SAM A 301 27 HET SAM B 301 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *56(H2 O) HELIX 1 AA1 ASP A 19 ALA A 30 1 12 HELIX 2 AA2 ALA A 42 HIS A 52 1 11 HELIX 3 AA3 ALA A 63 ARG A 66 5 4 HELIX 4 AA4 MET A 67 ALA A 75 1 9 HELIX 5 AA5 LYS A 77 GLY A 81 5 5 HELIX 6 AA6 ALA A 92 VAL A 96 5 5 HELIX 7 AA7 PRO A 97 HIS A 101 5 5 HELIX 8 AA8 TRP A 113 GLY A 123 1 11 HELIX 9 AA9 GLU A 124 VAL A 134 1 11 HELIX 10 AB1 SER A 148 ARG A 151 5 4 HELIX 11 AB2 PRO A 155 ARG A 159 5 5 HELIX 12 AB3 THR A 165 THR A 172 1 8 HELIX 13 AB4 GLY A 173 LEU A 181 1 9 HELIX 14 AB5 ASP B 19 ALA B 30 1 12 HELIX 15 AB6 ALA B 42 HIS B 52 1 11 HELIX 16 AB7 ALA B 63 ARG B 66 5 4 HELIX 17 AB8 MET B 67 ARG B 76 1 10 HELIX 18 AB9 LYS B 77 GLY B 81 5 5 HELIX 19 AC1 ALA B 92 VAL B 96 5 5 HELIX 20 AC2 PRO B 97 HIS B 101 5 5 HELIX 21 AC3 TRP B 113 GLY B 123 1 11 HELIX 22 AC4 GLU B 124 VAL B 134 1 11 HELIX 23 AC5 SER B 148 ARG B 151 5 4 HELIX 24 AC6 THR B 165 THR B 172 1 8 HELIX 25 AC7 GLY B 173 LEU B 181 1 9 SHEET 1 AA1 2 LEU A 7 ALA A 11 0 SHEET 2 AA1 2 LYS A 14 LEU A 18 -1 O LEU A 18 N LEU A 7 SHEET 1 AA2 7 LEU A 86 SER A 90 0 SHEET 2 AA2 7 TRP A 55 ASP A 61 1 N GLY A 59 O VAL A 89 SHEET 3 AA2 7 ARG A 32 VAL A 37 1 N LEU A 34 O VAL A 58 SHEET 4 AA2 7 GLU A 106 LEU A 110 1 O MET A 108 N VAL A 37 SHEET 5 AA2 7 PRO A 140 GLY A 146 1 O GLU A 142 N VAL A 109 SHEET 6 AA2 7 VAL A 215 ALA A 222 -1 O LEU A 216 N ILE A 145 SHEET 7 AA2 7 TRP A 183 VAL A 191 -1 N ALA A 186 O ARG A 219 SHEET 1 AA3 2 LYS B 8 ALA B 11 0 SHEET 2 AA3 2 LYS B 14 ASP B 17 -1 O THR B 16 N VAL B 9 SHEET 1 AA4 7 LEU B 86 VAL B 89 0 SHEET 2 AA4 7 TRP B 55 VAL B 60 1 N GLY B 59 O VAL B 89 SHEET 3 AA4 7 ARG B 32 VAL B 37 1 N LEU B 34 O VAL B 58 SHEET 4 AA4 7 GLU B 106 LEU B 110 1 O MET B 108 N VAL B 37 SHEET 5 AA4 7 PRO B 140 GLY B 146 1 O PRO B 140 N VAL B 107 SHEET 6 AA4 7 THR B 212 ALA B 222 -1 O LEU B 216 N ILE B 145 SHEET 7 AA4 7 TRP B 183 ASP B 195 -1 N ASP B 187 O ARG B 219 CISPEP 1 GLU A 152 PRO A 153 0 4.15 CISPEP 2 GLU B 152 PRO B 153 0 -0.89 SITE 1 AC1 13 GLY A 38 THR A 39 GLY A 40 THR A 44 SITE 2 AC1 13 ASP A 61 PRO A 62 ARG A 66 ILE A 93 SITE 3 AC1 13 GLU A 94 LEU A 110 MET A 111 TRP A 113 SITE 4 AC1 13 LEU A 116 SITE 1 AC2 16 GLY B 38 GLY B 40 ASP B 61 PRO B 62 SITE 2 AC2 16 ARG B 66 ALA B 92 ILE B 93 GLU B 94 SITE 3 AC2 16 LEU B 110 MET B 111 TRP B 113 LYS B 115 SITE 4 AC2 16 LEU B 116 SER B 201 HOH B 401 HOH B 402 CRYST1 65.718 83.229 93.872 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010653 0.00000