HEADER HYDROLASE 08-JUN-15 5BWI TITLE CRYSTALLOGRAPHIC STRUCTURE OF A BACTERIAL HEPARANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 79; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: DP46_278, DP55_3260; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS GLUCURONIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.YU,H.BLANCHARD REVDAT 4 27-SEP-23 5BWI 1 REMARK LINK REVDAT 3 25-NOV-15 5BWI 1 JRNL REVDAT 2 11-NOV-15 5BWI 1 COMPND REVDAT 1 28-OCT-15 5BWI 0 JRNL AUTH L.BOHLMANN,G.D.TREDWELL,X.YU,C.W.CHANG,T.HASELHORST, JRNL AUTH 2 M.WINGER,J.C.DYASON,R.J.THOMSON,J.TIRALONGO,I.R.BEACHAM, JRNL AUTH 3 H.BLANCHARD,M.VON ITZSTEIN JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF A HEPARANASE. JRNL REF NAT.CHEM.BIOL. V. 11 955 2015 JRNL REFN ESSN 1552-4469 JRNL PMID 26565989 JRNL DOI 10.1038/NCHEMBIO.1956 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 122996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8438 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 434 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6319 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 1213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6664 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6198 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9159 ; 1.321 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14219 ; 0.783 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 945 ; 5.990 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;35.180 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 894 ;12.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1037 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8002 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1581 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3593 ; 1.226 ; 1.780 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3591 ; 1.221 ; 1.778 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4506 ; 2.020 ; 2.664 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4507 ; 2.020 ; 2.664 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3071 ; 1.469 ; 1.892 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3072 ; 1.468 ; 1.892 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4622 ; 2.370 ; 2.788 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8745 ; 5.996 ;16.706 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8746 ; 5.996 ;16.707 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 31.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.54 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VNZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.58000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.51500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.29000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.51500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.87000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.51500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.29000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.51500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.51500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.87000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1 REMARK 465 GLN A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 PRO B 1 REMARK 465 GLN B 2 REMARK 465 GLN B 3 REMARK 465 PRO B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 422 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 43 49.11 -85.39 REMARK 500 PRO A 43 45.54 -82.54 REMARK 500 ALA A 157 30.90 -143.70 REMARK 500 TRP A 190 -30.09 -152.59 REMARK 500 VAL A 267 -61.74 -121.84 REMARK 500 PRO B 43 45.90 -82.84 REMARK 500 GLU B 144 59.35 39.34 REMARK 500 ALA B 157 35.81 -149.19 REMARK 500 TRP B 190 -27.54 -145.01 REMARK 500 TRP B 190 -38.74 -139.05 REMARK 500 SER B 220 31.70 -98.21 REMARK 500 VAL B 267 -58.50 -127.95 REMARK 500 ASN B 383 57.37 37.73 REMARK 500 PHE B 445 48.59 -102.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 57 OD1 REMARK 620 2 GLY A 60 O 114.7 REMARK 620 3 CYS A 103 O 74.3 103.5 REMARK 620 4 HOH A 795 O 77.2 86.9 151.5 REMARK 620 5 HOH A1145 O 95.3 147.2 97.1 87.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 504 DBREF1 5BWI A 1 446 UNP A0A095J205_BURPE DBREF2 5BWI A A0A095J205 44 489 DBREF1 5BWI B 1 446 UNP A0A095J205_BURPE DBREF2 5BWI B A0A095J205 44 489 SEQRES 1 A 446 PRO GLN GLN PRO PRO PRO ALA GLY PRO SER SER SER ALA SEQRES 2 A 446 ASN VAL ALA MET THR LEU PRO ALA ASP ALA PRO ARG ILE SEQRES 3 A 446 ALA ARG ASP PHE ALA GLY LEU SER ILE GLU LYS ALA ALA SEQRES 4 A 446 LEU SER TYR PRO LEU LEU SER GLY GLU ASN GLY ASN MET SEQRES 5 A 446 VAL GLY LEU PHE ASN ARG LEU GLY ALA GLY VAL LEU ARG SEQRES 6 A 446 ILE GLY GLY ASN SER SER ASP ALA SER GLY TRP GLN ARG SEQRES 7 A 446 THR GLY PRO ASP GLU THR SER GLY VAL ILE THR PRO ALA SEQRES 8 A 446 ALA VAL ASP ARG LEU ALA SER PHE VAL GLN ALA CYS ARG SEQRES 9 A 446 TRP ARG VAL ILE TYR GLY LEU ASN PHE VAL GLY ASN ASP SEQRES 10 A 446 PRO ALA THR ILE ALA ASP GLU ALA ALA TYR ALA ALA GLN SEQRES 11 A 446 ALA LEU GLY VAL GLN LEU ALA GLY PHE GLU ILE GLY ASN SEQRES 12 A 446 GLU PRO ASP LEU TYR ALA GLN HIS GLY LEU ALA PRO ASN SEQRES 13 A 446 ALA ASN THR TYR PRO GLY PHE VAL SER ARG TRP THR THR SEQRES 14 A 446 PHE ALA ASN ALA ILE ARG ALA ALA VAL PRO ASP ALA VAL SEQRES 15 A 446 PHE THR GLY PRO ALA THR ALA TRP ASN TYR GLN ARG TYR SEQRES 16 A 446 THR VAL PRO PHE ALA SER ASP ALA ALA GLY LEU VAL SER SEQRES 17 A 446 LEU LEU THR GLN HIS HIS TYR ARG ASN PRO ASP SER ALA SEQRES 18 A 446 THR ILE GLU ALA MET LEU SER PRO ASP PRO SER LEU ALA SEQRES 19 A 446 PRO MET LEU GLN ALA LEU GLN GLY ALA ALA SER ALA ARG SEQRES 20 A 446 GLY ILE GLY PHE ARG LEU ALA GLU THR ASN SER TYR TRP SEQRES 21 A 446 GLY GLY GLY LYS PRO GLY VAL SER ASP ALA HIS ALA SER SEQRES 22 A 446 ALA LEU TRP VAL ILE ASN PHE LEU PHE ALA VAL ALA GLN SEQRES 23 A 446 GLY GLY ALA SER GLY VAL ASN LEU HIS THR GLY GLY GLY SEQRES 24 A 446 ALA SER TYR SER ALA ILE LYS THR ASN LYS THR ALA GLY SEQRES 25 A 446 THR VAL ALA ALA ILE GLY PRO GLU TYR TYR GLY ILE TYR SEQRES 26 A 446 LEU PHE ASN GLN ALA ALA GLY GLY ARG LEU MET GLN THR SEQRES 27 A 446 ARG VAL ASP SER ALA GLY THR THR LEU PHE ALA HIS ALA SEQRES 28 A 446 VAL ALA ALA ASP GLY GLY GLY VAL ARG LEU ILE LEU VAL SEQRES 29 A 446 ASN THR ASP ALA ASN SER GLY TYR ASP VAL ALA VAL ASP SEQRES 30 A 446 CYS SER SER VAL PRO ASN ALA ARG ALA GLY ILE VAL THR SEQRES 31 A 446 THR LEU GLY GLY PRO SER LEU GLY SER LEU THR GLY THR SEQRES 32 A 446 GLN ILE ASP GLY ALA THR PHE ALA LEU ASP GLY SER GLY SEQRES 33 A 446 ALA PRO GLN GLY GLY ARG PRO VAL ALA CYS VAL ASN GLY SEQRES 34 A 446 VAL LEU GLY VAL HIS VAL ALA SER ALA SER ALA LEU LEU SEQRES 35 A 446 VAL ASP PHE ALA SEQRES 1 B 446 PRO GLN GLN PRO PRO PRO ALA GLY PRO SER SER SER ALA SEQRES 2 B 446 ASN VAL ALA MET THR LEU PRO ALA ASP ALA PRO ARG ILE SEQRES 3 B 446 ALA ARG ASP PHE ALA GLY LEU SER ILE GLU LYS ALA ALA SEQRES 4 B 446 LEU SER TYR PRO LEU LEU SER GLY GLU ASN GLY ASN MET SEQRES 5 B 446 VAL GLY LEU PHE ASN ARG LEU GLY ALA GLY VAL LEU ARG SEQRES 6 B 446 ILE GLY GLY ASN SER SER ASP ALA SER GLY TRP GLN ARG SEQRES 7 B 446 THR GLY PRO ASP GLU THR SER GLY VAL ILE THR PRO ALA SEQRES 8 B 446 ALA VAL ASP ARG LEU ALA SER PHE VAL GLN ALA CYS ARG SEQRES 9 B 446 TRP ARG VAL ILE TYR GLY LEU ASN PHE VAL GLY ASN ASP SEQRES 10 B 446 PRO ALA THR ILE ALA ASP GLU ALA ALA TYR ALA ALA GLN SEQRES 11 B 446 ALA LEU GLY VAL GLN LEU ALA GLY PHE GLU ILE GLY ASN SEQRES 12 B 446 GLU PRO ASP LEU TYR ALA GLN HIS GLY LEU ALA PRO ASN SEQRES 13 B 446 ALA ASN THR TYR PRO GLY PHE VAL SER ARG TRP THR THR SEQRES 14 B 446 PHE ALA ASN ALA ILE ARG ALA ALA VAL PRO ASP ALA VAL SEQRES 15 B 446 PHE THR GLY PRO ALA THR ALA TRP ASN TYR GLN ARG TYR SEQRES 16 B 446 THR VAL PRO PHE ALA SER ASP ALA ALA GLY LEU VAL SER SEQRES 17 B 446 LEU LEU THR GLN HIS HIS TYR ARG ASN PRO ASP SER ALA SEQRES 18 B 446 THR ILE GLU ALA MET LEU SER PRO ASP PRO SER LEU ALA SEQRES 19 B 446 PRO MET LEU GLN ALA LEU GLN GLY ALA ALA SER ALA ARG SEQRES 20 B 446 GLY ILE GLY PHE ARG LEU ALA GLU THR ASN SER TYR TRP SEQRES 21 B 446 GLY GLY GLY LYS PRO GLY VAL SER ASP ALA HIS ALA SER SEQRES 22 B 446 ALA LEU TRP VAL ILE ASN PHE LEU PHE ALA VAL ALA GLN SEQRES 23 B 446 GLY GLY ALA SER GLY VAL ASN LEU HIS THR GLY GLY GLY SEQRES 24 B 446 ALA SER TYR SER ALA ILE LYS THR ASN LYS THR ALA GLY SEQRES 25 B 446 THR VAL ALA ALA ILE GLY PRO GLU TYR TYR GLY ILE TYR SEQRES 26 B 446 LEU PHE ASN GLN ALA ALA GLY GLY ARG LEU MET GLN THR SEQRES 27 B 446 ARG VAL ASP SER ALA GLY THR THR LEU PHE ALA HIS ALA SEQRES 28 B 446 VAL ALA ALA ASP GLY GLY GLY VAL ARG LEU ILE LEU VAL SEQRES 29 B 446 ASN THR ASP ALA ASN SER GLY TYR ASP VAL ALA VAL ASP SEQRES 30 B 446 CYS SER SER VAL PRO ASN ALA ARG ALA GLY ILE VAL THR SEQRES 31 B 446 THR LEU GLY GLY PRO SER LEU GLY SER LEU THR GLY THR SEQRES 32 B 446 GLN ILE ASP GLY ALA THR PHE ALA LEU ASP GLY SER GLY SEQRES 33 B 446 ALA PRO GLN GLY GLY ARG PRO VAL ALA CYS VAL ASN GLY SEQRES 34 B 446 VAL LEU GLY VAL HIS VAL ALA SER ALA SER ALA LEU LEU SEQRES 35 B 446 VAL ASP PHE ALA HET GOL A 501 6 HET GOL A 502 6 HET ACT A 503 4 HET NA A 504 1 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 NA NA 1+ FORMUL 7 HOH *1213(H2 O) HELIX 1 AA1 ALA A 38 TYR A 42 5 5 HELIX 2 AA2 ASN A 49 GLY A 60 1 12 HELIX 3 AA3 GLY A 68 SER A 74 5 7 HELIX 4 AA4 THR A 89 ARG A 104 1 16 HELIX 5 AA5 ASP A 117 GLY A 133 1 17 HELIX 6 AA6 GLU A 144 ASP A 146 5 3 HELIX 7 AA7 LEU A 147 GLY A 152 1 6 HELIX 8 AA8 THR A 159 VAL A 178 1 20 HELIX 9 AA9 TYR A 195 ALA A 203 1 9 HELIX 10 AB1 ASN A 217 ALA A 221 5 5 HELIX 11 AB2 THR A 222 LEU A 227 1 6 HELIX 12 AB3 SER A 232 ARG A 247 1 16 HELIX 13 AB4 HIS A 271 GLY A 287 1 17 HELIX 14 AB5 GLY A 318 ALA A 331 1 14 HELIX 15 AB6 ALA B 38 TYR B 42 5 5 HELIX 16 AB7 ASN B 49 GLY B 60 1 12 HELIX 17 AB8 GLY B 68 SER B 74 5 7 HELIX 18 AB9 THR B 89 ARG B 104 1 16 HELIX 19 AC1 ASP B 117 GLY B 133 1 17 HELIX 20 AC2 GLU B 144 ASP B 146 5 3 HELIX 21 AC3 LEU B 147 GLY B 152 1 6 HELIX 22 AC4 THR B 159 VAL B 178 1 20 HELIX 23 AC5 TYR B 195 ALA B 203 1 9 HELIX 24 AC6 ASN B 217 ALA B 221 5 5 HELIX 25 AC7 THR B 222 LEU B 227 1 6 HELIX 26 AC8 SER B 232 ARG B 247 1 16 HELIX 27 AC9 HIS B 271 GLY B 287 1 17 HELIX 28 AD1 GLY B 318 ALA B 331 1 14 SHEET 1 AA1 4 GLN A 337 SER A 342 0 SHEET 2 AA1 4 SER A 10 THR A 18 -1 N THR A 18 O GLN A 337 SHEET 3 AA1 4 GLY A 371 ASP A 377 1 O ALA A 375 N ALA A 13 SHEET 4 AA1 4 VAL A 430 VAL A 435 -1 O LEU A 431 N VAL A 376 SHEET 1 AA2 7 ARG A 25 ILE A 26 0 SHEET 2 AA2 7 GLY A 333 LEU A 335 -1 O GLY A 333 N ILE A 26 SHEET 3 AA2 7 LEU A 347 ALA A 354 -1 O ALA A 353 N ARG A 334 SHEET 4 AA2 7 VAL A 359 ASN A 365 -1 O ILE A 362 N HIS A 350 SHEET 5 AA2 7 SER A 439 PHE A 445 -1 O VAL A 443 N LEU A 361 SHEET 6 AA2 7 ALA A 386 GLY A 393 -1 N LEU A 392 O ALA A 440 SHEET 7 AA2 7 GLN A 404 ILE A 405 -1 O GLN A 404 N GLY A 393 SHEET 1 AA3 7 ARG A 25 ILE A 26 0 SHEET 2 AA3 7 GLY A 333 LEU A 335 -1 O GLY A 333 N ILE A 26 SHEET 3 AA3 7 LEU A 347 ALA A 354 -1 O ALA A 353 N ARG A 334 SHEET 4 AA3 7 VAL A 359 ASN A 365 -1 O ILE A 362 N HIS A 350 SHEET 5 AA3 7 SER A 439 PHE A 445 -1 O VAL A 443 N LEU A 361 SHEET 6 AA3 7 ALA A 386 GLY A 393 -1 N LEU A 392 O ALA A 440 SHEET 7 AA3 7 VAL A 424 ALA A 425 -1 O VAL A 424 N GLY A 387 SHEET 1 AA4 9 ALA A 31 GLU A 36 0 SHEET 2 AA4 9 VAL A 63 GLY A 67 1 O ARG A 65 N LEU A 33 SHEET 3 AA4 9 ARG A 106 LEU A 111 1 O ARG A 106 N LEU A 64 SHEET 4 AA4 9 LEU A 136 ILE A 141 1 O GLY A 138 N TYR A 109 SHEET 5 AA4 9 PHE A 183 THR A 188 1 O THR A 184 N PHE A 139 SHEET 6 AA4 9 VAL A 207 ARG A 216 1 O SER A 208 N PHE A 183 SHEET 7 AA4 9 GLY A 250 TYR A 259 1 O GLY A 250 N LEU A 210 SHEET 8 AA4 9 GLY A 291 HIS A 295 1 O ASN A 293 N LEU A 253 SHEET 9 AA4 9 ALA A 31 GLU A 36 1 N GLY A 32 O LEU A 294 SHEET 1 AA5 2 GLY A 75 TRP A 76 0 SHEET 2 AA5 2 VAL A 87 ILE A 88 1 O ILE A 88 N GLY A 75 SHEET 1 AA6 2 ILE A 305 ASN A 308 0 SHEET 2 AA6 2 THR A 313 ILE A 317 -1 O THR A 313 N ASN A 308 SHEET 1 AA711 ARG B 25 ILE B 26 0 SHEET 2 AA711 GLY B 333 LEU B 335 -1 O GLY B 333 N ILE B 26 SHEET 3 AA711 LEU B 347 ALA B 354 -1 O ALA B 353 N ARG B 334 SHEET 4 AA711 VAL B 359 ASN B 365 -1 O ILE B 362 N HIS B 350 SHEET 5 AA711 SER B 439 PHE B 445 -1 O VAL B 443 N LEU B 361 SHEET 6 AA711 ALA B 386 GLY B 393 -1 N LEU B 392 O ALA B 440 SHEET 7 AA711 ARG B 422 VAL B 427 -1 O ARG B 422 N VAL B 389 SHEET 8 AA711 VAL B 430 VAL B 435 -1 O VAL B 430 N VAL B 427 SHEET 9 AA711 GLY B 371 ASP B 377 -1 N VAL B 376 O LEU B 431 SHEET 10 AA711 SER B 10 THR B 18 1 N VAL B 15 O ASP B 377 SHEET 11 AA711 GLN B 337 SER B 342 -1 O GLN B 337 N THR B 18 SHEET 1 AA8 7 ARG B 25 ILE B 26 0 SHEET 2 AA8 7 GLY B 333 LEU B 335 -1 O GLY B 333 N ILE B 26 SHEET 3 AA8 7 LEU B 347 ALA B 354 -1 O ALA B 353 N ARG B 334 SHEET 4 AA8 7 VAL B 359 ASN B 365 -1 O ILE B 362 N HIS B 350 SHEET 5 AA8 7 SER B 439 PHE B 445 -1 O VAL B 443 N LEU B 361 SHEET 6 AA8 7 ALA B 386 GLY B 393 -1 N LEU B 392 O ALA B 440 SHEET 7 AA8 7 GLN B 404 ILE B 405 -1 O GLN B 404 N GLY B 393 SHEET 1 AA9 9 ALA B 31 GLU B 36 0 SHEET 2 AA9 9 VAL B 63 GLY B 67 1 O ARG B 65 N LEU B 33 SHEET 3 AA9 9 ARG B 106 LEU B 111 1 O ARG B 106 N LEU B 64 SHEET 4 AA9 9 LEU B 136 ILE B 141 1 O GLY B 138 N TYR B 109 SHEET 5 AA9 9 PHE B 183 THR B 188 1 O THR B 184 N PHE B 139 SHEET 6 AA9 9 VAL B 207 ARG B 216 1 O SER B 208 N PHE B 183 SHEET 7 AA9 9 GLY B 250 TYR B 259 1 O ARG B 252 N LEU B 210 SHEET 8 AA9 9 GLY B 291 HIS B 295 1 O ASN B 293 N LEU B 253 SHEET 9 AA9 9 ALA B 31 GLU B 36 1 N GLY B 32 O LEU B 294 SHEET 1 AB1 2 GLY B 75 TRP B 76 0 SHEET 2 AB1 2 VAL B 87 ILE B 88 1 O ILE B 88 N GLY B 75 SHEET 1 AB2 2 ILE B 305 ASN B 308 0 SHEET 2 AB2 2 THR B 313 ILE B 317 -1 O THR B 313 N ASN B 308 SSBOND 1 CYS A 378 CYS A 426 1555 1555 2.07 SSBOND 2 CYS B 378 CYS B 426 1555 1555 2.10 LINK OD1 ASN A 57 NA NA A 504 1555 1555 2.87 LINK O GLY A 60 NA NA A 504 1555 1555 2.66 LINK O CYS A 103 NA NA A 504 1555 1555 2.59 LINK NA NA A 504 O HOH A 795 1555 1555 2.88 LINK NA NA A 504 O HOH A1145 1555 1555 2.73 CISPEP 1 GLY A 185 PRO A 186 0 9.80 CISPEP 2 GLY B 185 PRO B 186 0 6.48 SITE 1 AC1 9 ARG A 25 ARG A 28 ASP A 29 ALA A 61 SITE 2 AC1 9 HOH A 613 HOH A 625 HOH A 641 HOH A 711 SITE 3 AC1 9 ASP B 355 SITE 1 AC2 7 TYR A 42 THR A 84 SER A 85 HOH A 735 SITE 2 AC2 7 HOH A 750 SER B 201 ASP B 202 SITE 1 AC3 9 ARG A 216 MET A 226 LEU A 227 SER A 228 SITE 2 AC3 9 ASP A 230 TRP A 276 HOH A 603 HOH A 607 SITE 3 AC3 9 HOH A 911 SITE 1 AC4 5 ASN A 57 GLY A 60 CYS A 103 HOH A 795 SITE 2 AC4 5 HOH A1145 CRYST1 125.030 125.030 125.160 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007998 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007990 0.00000