HEADER TRANSFERASE 08-JUN-15 5BX6 TITLE PKA IN COMPLEX WITH A HALOGENATED PHTHALAZINONE FRAGMENT COMPOUND. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 6-25; COMPND 11 SYNONYM: PKI-ALPHA,CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 12 MUSCLE/BRAIN ISOFORM; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: UNP RESIDUES 6-25 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PRAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS INHIBITOR, PROTEIN KINASE, STRUCTURE-GUIDED, FRAGMENT-BASED, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.NARAYANAN,K.A.ALAM,R.A.ENGH REVDAT 2 10-JAN-24 5BX6 1 REMARK REVDAT 1 14-SEP-16 5BX6 0 JRNL AUTH D.NARAYANAN,O.A.GANI,K.A.ALAM,R.A.ENGH JRNL TITL PKA BASED STUDIES OF LIGAND INTERACTIONS WITH A METHIONINE JRNL TITL 2 GATEKEEPER. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1750 - 4.4402 0.99 2781 144 0.1469 0.1816 REMARK 3 2 4.4402 - 3.5253 1.00 2686 133 0.1390 0.1789 REMARK 3 3 3.5253 - 3.0799 1.00 2606 155 0.1739 0.2115 REMARK 3 4 3.0799 - 2.7984 1.00 2578 168 0.1724 0.2221 REMARK 3 5 2.7984 - 2.5979 0.99 2624 124 0.1770 0.2318 REMARK 3 6 2.5979 - 2.4448 0.99 2561 172 0.1689 0.2056 REMARK 3 7 2.4448 - 2.3224 1.00 2580 160 0.1711 0.2586 REMARK 3 8 2.3224 - 2.2213 0.99 2568 147 0.1756 0.2432 REMARK 3 9 2.2213 - 2.1358 1.00 2585 127 0.1834 0.2474 REMARK 3 10 2.1358 - 2.0621 1.00 2576 139 0.1870 0.2382 REMARK 3 11 2.0621 - 1.9976 1.00 2576 126 0.2060 0.2666 REMARK 3 12 1.9976 - 1.9405 1.00 2600 130 0.2255 0.2613 REMARK 3 13 1.9405 - 1.8894 0.96 2497 115 0.2466 0.3257 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3126 REMARK 3 ANGLE : 0.941 4227 REMARK 3 CHIRALITY : 0.041 441 REMARK 3 PLANARITY : 0.005 536 REMARK 3 DIHEDRAL : 14.242 1156 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8682 -6.4494 -16.9357 REMARK 3 T TENSOR REMARK 3 T11: 0.3407 T22: 0.3406 REMARK 3 T33: 0.2973 T12: -0.1193 REMARK 3 T13: -0.0700 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 3.5808 L22: 5.7417 REMARK 3 L33: 2.0484 L12: 1.2698 REMARK 3 L13: -0.4562 L23: -0.3288 REMARK 3 S TENSOR REMARK 3 S11: -0.2101 S12: 0.2200 S13: -0.4528 REMARK 3 S21: -0.5460 S22: 0.2689 S23: 0.4832 REMARK 3 S31: 0.6784 S32: -0.6195 S33: -0.0642 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0017 20.1585 -2.3662 REMARK 3 T TENSOR REMARK 3 T11: 0.1301 T22: 0.2238 REMARK 3 T33: 0.2360 T12: 0.0516 REMARK 3 T13: 0.0014 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.8700 L22: 0.3374 REMARK 3 L33: 2.7590 L12: 0.2281 REMARK 3 L13: 1.4289 L23: -0.5463 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: 0.0991 S13: 0.1347 REMARK 3 S21: 0.0674 S22: -0.0065 S23: -0.0087 REMARK 3 S31: -0.2273 S32: 0.3461 S33: 0.0891 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1736 19.4759 0.0657 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.1929 REMARK 3 T33: 0.2097 T12: 0.0278 REMARK 3 T13: -0.0041 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.3042 L22: 0.7571 REMARK 3 L33: 2.8707 L12: 0.7785 REMARK 3 L13: -1.7781 L23: -0.7904 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: -0.1631 S13: 0.2814 REMARK 3 S21: 0.1361 S22: 0.0151 S23: 0.0638 REMARK 3 S31: -0.2877 S32: -0.0892 S33: -0.0553 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8777 4.3904 -2.1287 REMARK 3 T TENSOR REMARK 3 T11: 0.0991 T22: 0.1471 REMARK 3 T33: 0.1420 T12: -0.0095 REMARK 3 T13: 0.0065 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.4975 L22: 1.1747 REMARK 3 L33: 1.4301 L12: -0.1190 REMARK 3 L13: -0.0483 L23: -0.6776 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: -0.0287 S13: 0.0256 REMARK 3 S21: -0.0069 S22: 0.0504 S23: 0.1002 REMARK 3 S31: 0.0995 S32: -0.1713 S33: -0.0121 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6192 -3.2003 -3.5057 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.1085 REMARK 3 T33: 0.1243 T12: 0.0115 REMARK 3 T13: 0.0069 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.2662 L22: 1.3472 REMARK 3 L33: 2.4733 L12: -0.2002 REMARK 3 L13: -0.2574 L23: -0.7396 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0467 S13: -0.0416 REMARK 3 S21: -0.0601 S22: -0.0599 S23: -0.1202 REMARK 3 S31: 0.2961 S32: 0.1610 S33: 0.0692 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0004 -15.5216 -0.9410 REMARK 3 T TENSOR REMARK 3 T11: 0.4074 T22: 0.1593 REMARK 3 T33: 0.2066 T12: -0.0668 REMARK 3 T13: 0.0225 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.5614 L22: 1.5837 REMARK 3 L33: 1.8159 L12: -0.0921 REMARK 3 L13: -0.1028 L23: -0.0647 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.0670 S13: -0.3320 REMARK 3 S21: -0.0135 S22: -0.0269 S23: 0.1548 REMARK 3 S31: 0.6863 S32: -0.1831 S33: 0.0307 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0637 19.8408 1.5853 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.2130 REMARK 3 T33: 0.2346 T12: 0.0241 REMARK 3 T13: -0.0238 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 0.2955 L22: 3.3046 REMARK 3 L33: 4.5752 L12: -0.0880 REMARK 3 L13: -0.5004 L23: -2.0420 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: -0.0859 S13: 0.1317 REMARK 3 S21: 0.3702 S22: 0.0168 S23: -0.0829 REMARK 3 S31: -0.4601 S32: -0.0405 S33: -0.0647 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3075 -8.2416 16.1727 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.2238 REMARK 3 T33: 0.1707 T12: 0.0281 REMARK 3 T13: 0.0454 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 3.2288 L22: 2.3738 REMARK 3 L33: 3.6313 L12: -1.0367 REMARK 3 L13: 2.6552 L23: -2.5505 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: -0.2448 S13: -0.0659 REMARK 3 S21: 0.2101 S22: -0.1784 S23: 0.4035 REMARK 3 S31: 0.2468 S32: -0.0922 S33: 0.2541 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4339 3.5247 4.5257 REMARK 3 T TENSOR REMARK 3 T11: 0.2531 T22: 0.1311 REMARK 3 T33: 0.2036 T12: -0.0208 REMARK 3 T13: -0.0198 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 4.8320 L22: 0.9138 REMARK 3 L33: 5.5636 L12: -0.7836 REMARK 3 L13: -3.0686 L23: 2.0331 REMARK 3 S TENSOR REMARK 3 S11: -0.1320 S12: 0.2015 S13: 0.5295 REMARK 3 S21: -0.1797 S22: 0.0534 S23: -0.2766 REMARK 3 S31: -0.8638 S32: -0.1884 S33: -0.1659 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 36.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0 REMARK 200 STARTING MODEL: 3VQH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE DROPLETS, CONTAINING 10 MG/ML PKA. REMARK 280 25 MM BIS-TRIS-HCL, PH 7.0, 150 MM KCL, 1.5MM OCTANOYL-N- REMARK 280 METHYLGLUCAMIDE AND 0.8 MM PKI PEPTIDE, WERE EQUILIBRATED REMARK 280 AGAINST 12-26 % (V/V) METHANOL., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.17450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.24000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.65750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.24000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.17450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.65750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 GLN A 177 OE1 NE2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 MPD A 404 O HOH A 501 2.04 REMARK 500 NZ LYS A 7 O HOH A 502 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 701 O HOH A 702 2555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 42.99 -145.25 REMARK 500 ASP A 184 91.57 70.92 REMARK 500 ASN A 216 -152.87 -141.74 REMARK 500 LEU A 273 48.42 -86.60 REMARK 500 LYS A 319 72.85 -104.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 495 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 404 DBREF 5BX6 A 0 350 UNP P17612 KAPCA_HUMAN 1 351 DBREF 5BX6 B 5 24 UNP P61925 IPKA_HUMAN 6 25 SEQRES 1 A 351 MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP GLU GLN SEQRES 2 A 351 GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP SEQRES 3 A 351 PHE LEU LYS LYS TRP GLU SER PRO ALA GLN ASN THR ALA SEQRES 4 A 351 HIS LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR SEQRES 5 A 351 GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SEQRES 6 A 351 THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN SEQRES 7 A 351 LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN SEQRES 8 A 351 GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU SEQRES 9 A 351 VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU SEQRES 10 A 351 TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SEQRES 11 A 351 SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS SEQRES 12 A 351 ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU SEQRES 13 A 351 TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS SEQRES 14 A 351 PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN SEQRES 15 A 351 VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG SEQRES 16 A 351 THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 351 GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP SEQRES 18 A 351 TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA SEQRES 19 A 351 GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE SEQRES 20 A 351 TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER SEQRES 21 A 351 HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU SEQRES 22 A 351 LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS SEQRES 23 A 351 ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA SEQRES 24 A 351 THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU SEQRES 25 A 351 ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SEQRES 26 A 351 SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEQRES 27 A 351 SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 B 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 B 20 ARG ARG ASN ALA ILE HIS ASP MODRES 5BX6 SEP A 10 SER MODIFIED RESIDUE MODRES 5BX6 TPO A 197 THR MODIFIED RESIDUE MODRES 5BX6 SEP A 338 SER MODIFIED RESIDUE HET SEP A 10 10 HET TPO A 197 11 HET SEP A 338 10 HET 495 A 401 12 HET MPD A 402 8 HET MPD A 403 8 HET MPD A 404 22 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM 495 4-CHLOROPHTHALAZIN-1(2H)-ONE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 495 C8 H5 CL N2 O FORMUL 4 MPD 3(C6 H14 O2) FORMUL 7 HOH *226(H2 O) HELIX 1 AA1 GLY A 9 SER A 32 1 24 HELIX 2 AA2 HIS A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 GLN A 96 1 13 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SER A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 VAL A 288 ASN A 293 1 6 HELIX 14 AB5 HIS A 294 ALA A 298 5 5 HELIX 15 AB6 ASP A 301 GLN A 307 1 7 HELIX 16 AB7 THR B 6 ALA B 12 1 7 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 SHEET 1 AA4 2 CYS A 199 GLY A 200 0 SHEET 2 AA4 2 ILE B 22 HIS B 23 -1 O ILE B 22 N GLY A 200 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 10 ALA A 70 VAL A 104 MET A 120 GLU A 121 SITE 2 AC1 10 TYR A 122 VAL A 123 LEU A 173 THR A 183 SITE 3 AC1 10 PHE A 327 HOH A 667 SITE 1 AC2 3 PHE A 18 GLU A 155 TYR A 306 SITE 1 AC3 5 ARG A 134 ASN A 326 PHE A 327 ASP A 328 SITE 2 AC3 5 MPD A 404 SITE 1 AC4 5 HIS A 131 ARG A 134 PHE A 314 MPD A 403 SITE 2 AC4 5 HOH A 501 CRYST1 72.349 75.315 80.480 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013822 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012425 0.00000