HEADER TRANSFERASE 09-JUN-15 5BXO TITLE HUMAN TANKYRASE-2 IN COMPLEX WITH MACROCYCLISED EXTENDED PEPTIDE TITLE 2 CP4N2M3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TANKYRASE-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 488-649; COMPND 5 SYNONYM: TANK2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6,ARTD6, COMPND 6 POLY [ADP-RIBOSE] POLYMERASE 5B,TNKS-2,TRF1-INTERACTING ANKYRIN- COMPND 7 RELATED ADP-RIBOSE POLYMERASE 2,TANKYRASE II,TANKYRASE-LIKE PROTEIN, COMPND 8 TANKYRASE-RELATED PROTEIN; COMPND 9 EC: 2.4.2.30; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: TANKYRASE-2; COMPND 13 CHAIN: C, D; COMPND 14 SYNONYM: TANK2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6,ARTD6, COMPND 15 POLY [ADP-RIBOSE] POLYMERASE 5B,TNKS-2,TRF1-INTERACTING ANKYRIN- COMPND 16 RELATED ADP-RIBOSE POLYMERASE 2,TANKYRASE II,TANKYRASE-LIKE PROTEIN, COMPND 17 TANKYRASE-RELATED PROTEIN; COMPND 18 EC: 2.4.2.30; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNKS2, PARP5B, TANK2, TNKL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGST; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS STAPLED PEPTIDE, PROTEIN-PROTEIN INTERACTION, ANKYRIN-REPEAT DOMAIN, KEYWDS 2 TANKYRASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.XU,G.FISCHER,M.HYVONEN,L.ITZHAKI REVDAT 3 29-MAR-23 5BXO 1 JRNL REMARK REVDAT 2 13-SEP-17 5BXO 1 REMARK REVDAT 1 29-JUN-16 5BXO 0 JRNL AUTH W.XU,Y.H.LAU,G.FISCHER,Y.S.TAN,A.CHATTOPADHYAY, JRNL AUTH 2 M.DE LA ROCHE,M.HYVONEN,C.VERMA,D.R.SPRING,L.S.ITZHAKI JRNL TITL MACROCYCLIZED EXTENDED PEPTIDES: INHIBITING THE JRNL TITL 2 SUBSTRATE-RECOGNITION DOMAIN OF TANKYRASE. JRNL REF J.AM.CHEM.SOC. V. 139 2245 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28084734 JRNL DOI 10.1021/JACS.6B10234 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 56016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2934 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3990 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2583 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 0.84000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.49000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.157 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2964 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2835 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4023 ; 1.577 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6538 ; 1.230 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 5.402 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;28.412 ;24.809 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;14.524 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.365 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3587 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 658 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1509 ; 1.247 ; 1.446 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1510 ; 1.246 ; 1.446 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1916 ; 1.976 ; 2.151 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1917 ; 1.976 ; 2.151 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1455 ; 1.798 ; 1.701 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1456 ; 1.797 ; 1.704 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2105 ; 2.749 ; 2.459 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3680 ; 5.196 ;12.677 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3681 ; 5.195 ;12.691 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 487 645 B 487 645 9517 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.334 REMARK 200 RESOLUTION RANGE LOW (A) : 53.312 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRI-SODIUM CITRATE, PH 5.0, 3.2 REMARK 280 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 486 REMARK 465 ALA A 647 REMARK 465 ALA A 648 REMARK 465 LEU A 649 REMARK 465 GLY B 486 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 491 OE1 OE2 REMARK 480 GLU A 498 CD OE1 OE2 REMARK 480 LYS A 509 CE NZ REMARK 480 LYS A 510 CE NZ REMARK 480 GLN A 547 OE1 NE2 REMARK 480 LYS A 602 NZ REMARK 480 LYS A 621 NZ REMARK 480 ASN B 489 CG OD1 ND2 REMARK 480 GLU B 498 CD OE1 OE2 REMARK 480 LYS B 509 NZ REMARK 480 LYS B 620 CE NZ REMARK 480 GLU C 8 CD OE1 OE2 REMARK 480 GLU D 8 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 644 OD2 ASP B 646 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 613 NH2 ARG A 623 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 491 CD GLU A 491 OE1 0.156 REMARK 500 GLU A 491 CD GLU A 491 OE2 -0.299 REMARK 500 LYS A 510 CD LYS A 510 CE -0.165 REMARK 500 GLN A 547 CD GLN A 547 OE1 0.226 REMARK 500 GLN A 547 CD GLN A 547 NE2 -0.220 REMARK 500 LYS A 602 CE LYS A 602 NZ -0.297 REMARK 500 ASN B 489 CB ASN B 489 CG -0.208 REMARK 500 GLU D 8 CG GLU D 8 CD 0.195 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 602 CD - CE - NZ ANGL. DEV. = 37.1 DEGREES REMARK 500 LYS B 509 CD - CE - NZ ANGL. DEV. = 14.2 DEGREES REMARK 500 GLU D 8 CG - CD - OE1 ANGL. DEV. = -18.1 DEGREES REMARK 500 GLU D 8 CG - CD - OE2 ANGL. DEV. = 17.0 DEGREES REMARK 500 GLU D 8 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 GLU D 8 O - C - N ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 0 and ARG C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU C 8 and NH2 C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU C 8 and NH2 C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 4XP C 100 and ALA C REMARK 800 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 4XP C 100 and ALA C REMARK 800 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 0 and ARG D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU D 8 and NH2 D 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU D 8 and NH2 D 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 4XP D 100 and ALA D REMARK 800 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 4XP D 100 and ALA D REMARK 800 3 DBREF 5BXO A 488 649 UNP Q9H2K2 TNKS2_HUMAN 488 649 DBREF 5BXO B 488 649 UNP Q9H2K2 TNKS2_HUMAN 488 649 DBREF 5BXO C 1 8 UNP Q9H2K2 TNKS2_HUMAN 5 12 DBREF 5BXO D 1 8 UNP Q9H2K2 TNKS2_HUMAN 5 12 SEQADV 5BXO GLY A 486 UNP Q9H2K2 EXPRESSION TAG SEQADV 5BXO SER A 487 UNP Q9H2K2 EXPRESSION TAG SEQADV 5BXO GLY B 486 UNP Q9H2K2 EXPRESSION TAG SEQADV 5BXO SER B 487 UNP Q9H2K2 EXPRESSION TAG SEQADV 5BXO ACE C 0 UNP Q9H2K2 EXPRESSION TAG SEQADV 5BXO GLU C 2 UNP Q9H2K2 CYS 6 CONFLICT SEQADV 5BXO ASP C 5 UNP Q9H2K2 GLY 9 CONFLICT SEQADV 5BXO GLU C 8 UNP Q9H2K2 ALA 12 CONFLICT SEQADV 5BXO NH2 C 9 UNP Q9H2K2 EXPRESSION TAG SEQADV 5BXO ACE D 0 UNP Q9H2K2 EXPRESSION TAG SEQADV 5BXO GLU D 2 UNP Q9H2K2 CYS 6 CONFLICT SEQADV 5BXO ASP D 5 UNP Q9H2K2 GLY 9 CONFLICT SEQADV 5BXO GLU D 8 UNP Q9H2K2 ALA 12 CONFLICT SEQADV 5BXO NH2 D 9 UNP Q9H2K2 EXPRESSION TAG SEQRES 1 A 164 GLY SER GLY ASN SER GLU ALA ASP ARG GLN LEU LEU GLU SEQRES 2 A 164 ALA ALA LYS ALA GLY ASP VAL GLU THR VAL LYS LYS LEU SEQRES 3 A 164 CYS THR VAL GLN SER VAL ASN CYS ARG ASP ILE GLU GLY SEQRES 4 A 164 ARG GLN SER THR PRO LEU HIS PHE ALA ALA GLY TYR ASN SEQRES 5 A 164 ARG VAL SER VAL VAL GLU TYR LEU LEU GLN HIS GLY ALA SEQRES 6 A 164 ASP VAL HIS ALA LYS ASP LYS GLY GLY LEU VAL PRO LEU SEQRES 7 A 164 HIS ASN ALA CYS SER TYR GLY HIS TYR GLU VAL ALA GLU SEQRES 8 A 164 LEU LEU VAL LYS HIS GLY ALA VAL VAL ASN VAL ALA ASP SEQRES 9 A 164 LEU TRP LYS PHE THR PRO LEU HIS GLU ALA ALA ALA LYS SEQRES 10 A 164 GLY LYS TYR GLU ILE CYS LYS LEU LEU LEU GLN HIS GLY SEQRES 11 A 164 ALA ASP PRO THR LYS LYS ASN ARG ASP GLY ASN THR PRO SEQRES 12 A 164 LEU ASP LEU VAL LYS ASP GLY ASP THR ASP ILE GLN ASP SEQRES 13 A 164 LEU LEU ARG GLY ASP ALA ALA LEU SEQRES 1 B 164 GLY SER GLY ASN SER GLU ALA ASP ARG GLN LEU LEU GLU SEQRES 2 B 164 ALA ALA LYS ALA GLY ASP VAL GLU THR VAL LYS LYS LEU SEQRES 3 B 164 CYS THR VAL GLN SER VAL ASN CYS ARG ASP ILE GLU GLY SEQRES 4 B 164 ARG GLN SER THR PRO LEU HIS PHE ALA ALA GLY TYR ASN SEQRES 5 B 164 ARG VAL SER VAL VAL GLU TYR LEU LEU GLN HIS GLY ALA SEQRES 6 B 164 ASP VAL HIS ALA LYS ASP LYS GLY GLY LEU VAL PRO LEU SEQRES 7 B 164 HIS ASN ALA CYS SER TYR GLY HIS TYR GLU VAL ALA GLU SEQRES 8 B 164 LEU LEU VAL LYS HIS GLY ALA VAL VAL ASN VAL ALA ASP SEQRES 9 B 164 LEU TRP LYS PHE THR PRO LEU HIS GLU ALA ALA ALA LYS SEQRES 10 B 164 GLY LYS TYR GLU ILE CYS LYS LEU LEU LEU GLN HIS GLY SEQRES 11 B 164 ALA ASP PRO THR LYS LYS ASN ARG ASP GLY ASN THR PRO SEQRES 12 B 164 LEU ASP LEU VAL LYS ASP GLY ASP THR ASP ILE GLN ASP SEQRES 13 B 164 LEU LEU ARG GLY ASP ALA ALA LEU SEQRES 1 C 10 ACE ARG GLU ALA GLY ASP GLY ALA GLU NH2 SEQRES 1 D 10 ACE ARG GLU ALA GLY ASP GLY ALA GLU NH2 HET ACE C 0 3 HET NH2 C 9 1 HET ACE D 0 3 HET NH2 D 9 1 HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET DMS A 704 4 HET SO4 B 701 5 HET SO4 B 702 5 HET SO4 B 703 5 HET DMS B 704 4 HET DMS B 705 4 HET 4XP C 100 15 HET 4XP D 100 15 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM 4XP 4,4'-PROPANE-1,3-DIYLBIS(1-METHYL-1H-1,2,3-TRIAZOLE) FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 NH2 2(H2 N) FORMUL 5 SO4 6(O4 S 2-) FORMUL 8 DMS 3(C2 H6 O S) FORMUL 14 4XP 2(C9 H14 N6) FORMUL 16 HOH *277(H2 O) HELIX 1 AA1 SER A 487 GLY A 503 1 17 HELIX 2 AA2 ASP A 504 CYS A 512 1 9 HELIX 3 AA3 THR A 528 TYR A 536 1 9 HELIX 4 AA4 ARG A 538 HIS A 548 1 11 HELIX 5 AA5 VAL A 561 TYR A 569 1 9 HELIX 6 AA6 HIS A 571 HIS A 581 1 11 HELIX 7 AA7 THR A 594 GLY A 603 1 10 HELIX 8 AA8 LYS A 604 HIS A 614 1 11 HELIX 9 AA9 THR A 627 VAL A 632 1 6 HELIX 10 AB1 ASP A 636 GLY A 645 1 10 HELIX 11 AB2 GLY B 488 GLY B 503 1 16 HELIX 12 AB3 ASP B 504 CYS B 512 1 9 HELIX 13 AB4 THR B 528 TYR B 536 1 9 HELIX 14 AB5 ARG B 538 HIS B 548 1 11 HELIX 15 AB6 VAL B 561 TYR B 569 1 9 HELIX 16 AB7 HIS B 571 HIS B 581 1 11 HELIX 17 AB8 THR B 594 GLY B 603 1 10 HELIX 18 AB9 LYS B 604 HIS B 614 1 11 HELIX 19 AC1 THR B 627 VAL B 632 1 6 HELIX 20 AC2 ASP B 636 GLY B 645 1 10 LINK C ACE C 0 N ARG C 1 1555 1555 1.35 LINK CB ALA C 3 C8 4XP C 100 1555 1555 1.54 LINK CB ALA C 7 C 4XP C 100 1555 1555 1.55 LINK C AGLU C 8 N NH2 C 9 1555 1555 1.32 LINK C BGLU C 8 N NH2 C 9 1555 1555 1.31 LINK C ACE D 0 N ARG D 1 1555 1555 1.35 LINK CB ALA D 3 C8 4XP D 100 1555 1555 1.54 LINK CB ALA D 7 C 4XP D 100 1555 1555 1.56 LINK C AGLU D 8 N NH2 D 9 1555 1555 1.34 LINK C BGLU D 8 N NH2 D 9 1555 1555 1.32 CISPEP 1 SER B 487 GLY B 488 0 17.68 SITE 1 AC1 6 ALA A 601 LYS A 602 LYS A 633 HOH A 809 SITE 2 AC1 6 ASN B 626 HOH B 878 SITE 1 AC2 7 GLU A 576 LYS A 580 LYS A 592 HIS A 614 SITE 2 AC2 7 ARG A 623 HOH A 869 GLN B 613 SITE 1 AC3 8 ARG A 538 VAL A 539 SER A 540 LYS A 557 SITE 2 AC3 8 HOH A 805 HOH A 825 HOH A 856 HOH A 868 SITE 1 AC4 3 CYS A 512 HIS A 548 HIS B 548 SITE 1 AC5 10 LYS A 633 ASP A 634 HOH A 848 GLY B 603 SITE 2 AC5 10 LYS B 604 TYR B 605 GLU B 606 HOH B 811 SITE 3 AC5 10 HOH B 815 HOH B 861 SITE 1 AC6 5 LYS B 592 GLN B 613 HIS B 614 ARG B 623 SITE 2 AC6 5 HOH B 806 SITE 1 AC7 7 ASN B 537 ARG B 538 VAL B 539 SER B 540 SITE 2 AC7 7 LYS B 557 HOH B 802 HOH B 825 SITE 1 AC8 5 TYR B 605 LYS B 609 ASP B 624 GLY B 625 SITE 2 AC8 5 HOH B 827 SITE 1 AC9 3 LYS B 555 ASP B 556 GLY B 559 SITE 1 AD1 9 ASP A 589 TRP A 591 PHE A 593 GLU A 598 SITE 2 AD1 9 HOH A 879 ASP B 634 THR B 637 GLU C 2 SITE 3 AD1 9 HOH C 207 SITE 1 AD2 10 TYR A 569 HIS A 571 LYS A 602 HOH A 837 SITE 2 AD2 10 GLU B 491 ARG B 494 ALA C 7 4XP C 100 SITE 3 AD2 10 HOH C 204 HOH C 206 SITE 1 AD3 10 TYR A 569 HIS A 571 LYS A 602 HOH A 837 SITE 2 AD3 10 GLU B 491 ARG B 494 ALA C 7 4XP C 100 SITE 3 AD3 10 HOH C 204 HOH C 206 SITE 1 AD4 13 ARG A 525 TYR A 569 GLU B 506 THR B 507 SITE 2 AD4 13 GLU B 523 GLU C 2 GLY C 4 GLY C 6 SITE 3 AD4 13 ALA C 7 GLU C 8 NH2 C 9 HOH C 202 SITE 4 AD4 13 HOH C 203 SITE 1 AD5 12 GLY A 535 TYR A 569 HIS A 571 GLU B 506 SITE 2 AD5 12 THR B 507 GLU B 523 ALA C 3 GLY C 6 SITE 3 AD5 12 GLU C 8 NH2 C 9 HOH C 203 HOH C 209 SITE 1 AD6 9 ASP A 634 GLY A 635 THR A 637 ASP B 589 SITE 2 AD6 9 TRP B 591 PHE B 593 GLU B 598 GLU D 2 SITE 3 AD6 9 HOH D 208 SITE 1 AD7 10 ARG A 494 TYR B 569 HIS B 571 LYS B 602 SITE 2 AD7 10 HOH B 829 ALA D 7 4XP D 100 HOH D 201 SITE 3 AD7 10 HOH D 210 HOH D 212 SITE 1 AD8 10 ARG A 494 TYR B 569 HIS B 571 LYS B 602 SITE 2 AD8 10 HOH B 829 ALA D 7 4XP D 100 HOH D 201 SITE 3 AD8 10 HOH D 210 HOH D 212 SITE 1 AD9 12 ARG A 494 GLU A 506 GLU A 523 GLY B 535 SITE 2 AD9 12 TYR B 569 HIS B 571 ALA D 3 GLY D 6 SITE 3 AD9 12 GLU D 8 NH2 D 9 HOH D 205 HOH D 209 SITE 1 AE1 13 ARG A 494 GLU A 506 GLU A 523 ARG B 525 SITE 2 AE1 13 TYR B 569 GLU D 2 GLY D 4 GLY D 6 SITE 3 AE1 13 ALA D 7 GLU D 8 HOH D 203 HOH D 205 SITE 4 AE1 13 HOH D 215 CRYST1 29.823 46.014 54.472 78.45 88.99 72.35 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033531 -0.010666 0.001627 0.00000 SCALE2 0.000000 0.022805 -0.004765 0.00000 SCALE3 0.000000 0.000000 0.018757 0.00000