HEADER LYASE 10-JUN-15 5BY5 TITLE HIGH RESOLUTION STRUCTURE OF THE ECTOINE SYNTHASE FROM THE COLD- TITLE 2 ADAPTED MARINE BACTERIUM SPHINGOPYXIS ALASKENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ECTOINE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N-ACETYLDIAMINOBUTYRATE DEHYDRATASE; COMPND 5 EC: 4.2.1.108; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOPYXIS ALASKENSIS (STRAIN DSM 13593 / LMG SOURCE 3 18877 / RB2256); SOURCE 4 ORGANISM_TAXID: 317655; SOURCE 5 GENE: ECTC, SALA_2951; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPATIBLE SOLUTE - OSMOSTRESS PROTECTANT - CHEMICAL CHAPERONE - KEYWDS 2 ENZYME - ECTOINE SYNTHESIS - CUPIN - X-RAY ANALYSIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.WIDDERICH,S.KOBUS,A.HOEPPNER,E.BREMER,S.H.J.SMITS REVDAT 3 08-MAY-24 5BY5 1 REMARK REVDAT 2 20-JUL-16 5BY5 1 JRNL REVDAT 1 27-APR-16 5BY5 0 JRNL AUTH N.WIDDERICH,S.KOBUS,A.HOPPNER,R.RICLEA,A.SEUBERT, JRNL AUTH 2 J.S.DICKSCHAT,J.HEIDER,S.H.SMITS,E.BREMER JRNL TITL BIOCHEMISTRY AND CRYSTAL STRUCTURE OF ECTOINE SYNTHASE: A JRNL TITL 2 METAL-CONTAINING MEMBER OF THE CUPIN SUPERFAMILY. JRNL REF PLOS ONE V. 11 51285 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 26986827 JRNL DOI 10.1371/JOURNAL.PONE.0151285 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 48490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.300 REMARK 3 FREE R VALUE TEST SET COUNT : 616 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.752 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1004 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1018 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1353 ; 2.187 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2291 ; 0.954 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 125 ; 7.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;30.077 ;22.553 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 172 ;12.468 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;25.196 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 154 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1128 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 235 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 488 ; 2.465 ; 1.112 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 487 ; 2.412 ; 1.101 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 617 ; 3.488 ; 1.673 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 618 ; 3.497 ; 1.683 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 516 ; 6.072 ; 1.899 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 517 ; 6.071 ; 1.908 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 737 ; 6.792 ; 2.588 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1121 ; 6.743 ;12.191 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1080 ; 6.543 ;11.787 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2021 ; 5.021 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 27 ;43.649 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2091 ;16.327 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49094 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 19.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CALCIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE PH 6, 40% (V/V) 1,2-PROPANEDIOL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.88667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.44333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.44333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.88667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.88667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 116 REMARK 465 HIS A 117 REMARK 465 ASP A 118 REMARK 465 GLU A 119 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 ALA A 122 REMARK 465 TYR A 123 REMARK 465 PRO A 124 REMARK 465 ALA A 125 REMARK 465 ASP A 126 REMARK 465 PRO A 127 REMARK 465 GLU A 128 REMARK 465 LEU A 129 REMARK 465 ALA A 130 REMARK 465 ARG A 131 REMARK 465 GLU A 132 REMARK 465 PRO A 133 REMARK 465 VAL A 134 REMARK 465 ALA A 135 REMARK 465 ALA A 136 REMARK 465 ASP A 137 REMARK 465 ASN A 138 REMARK 465 TRP A 139 REMARK 465 SER A 140 REMARK 465 HIS A 141 REMARK 465 PRO A 142 REMARK 465 GLN A 143 REMARK 465 PHE A 144 REMARK 465 GLU A 145 REMARK 465 LYS A 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 10 O HOH A 301 1.32 REMARK 500 OH TYR A 85 O2 PGO A 203 1.83 REMARK 500 NH2 ARG A 10 O HOH A 302 2.03 REMARK 500 O HOH A 307 O HOH A 327 2.06 REMARK 500 O HOH A 302 O HOH A 308 2.14 REMARK 500 O HOH A 337 O HOH A 370 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 49 O1 PGO A 206 6554 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 25 CZ ARG A 25 NH1 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 4 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 4 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 10 NH1 - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 25 NE - CZ - NH2 ANGL. DEV. = 9.1 DEGREES REMARK 500 PHE A 37 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 MET A 84 CG - SD - CE ANGL. DEV. = -19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BXX RELATED DB: PDB DBREF 5BY5 A 1 137 UNP Q1GNW6 ECTC_SPHAL 1 137 SEQADV 5BY5 ASN A 138 UNP Q1GNW6 EXPRESSION TAG SEQADV 5BY5 TRP A 139 UNP Q1GNW6 EXPRESSION TAG SEQADV 5BY5 SER A 140 UNP Q1GNW6 EXPRESSION TAG SEQADV 5BY5 HIS A 141 UNP Q1GNW6 EXPRESSION TAG SEQADV 5BY5 PRO A 142 UNP Q1GNW6 EXPRESSION TAG SEQADV 5BY5 GLN A 143 UNP Q1GNW6 EXPRESSION TAG SEQADV 5BY5 PHE A 144 UNP Q1GNW6 EXPRESSION TAG SEQADV 5BY5 GLU A 145 UNP Q1GNW6 EXPRESSION TAG SEQADV 5BY5 LYS A 146 UNP Q1GNW6 EXPRESSION TAG SEQRES 1 A 146 MET ILE VAL ARG ASN LEU GLY ASP ILE ARG LYS THR ASP SEQRES 2 A 146 ARG ASN VAL ARG SER ASP GLY TRP ALA SER ALA ARG MET SEQRES 3 A 146 LEU LEU LYS ASP ASP GLY MET GLY PHE SER PHE HIS VAL SEQRES 4 A 146 THR THR LEU PHE ALA GLY SER GLU LEU ARG MET HIS TYR SEQRES 5 A 146 GLN ASN HIS LEU GLU ALA VAL LEU VAL LEU LYS GLY THR SEQRES 6 A 146 GLY THR ILE GLU ASP LEU ALA THR GLY GLU VAL HIS ALA SEQRES 7 A 146 LEU ARG PRO GLY VAL MET TYR ALA LEU ASP ASP HIS ASP SEQRES 8 A 146 ARG HIS ILE VAL ARG PRO GLU THR ASP ILE LEU THR ALA SEQRES 9 A 146 CYS VAL PHE ASN PRO PRO VAL THR GLY ARG GLU VAL HIS SEQRES 10 A 146 ASP GLU SER GLY ALA TYR PRO ALA ASP PRO GLU LEU ALA SEQRES 11 A 146 ARG GLU PRO VAL ALA ALA ASP ASN TRP SER HIS PRO GLN SEQRES 12 A 146 PHE GLU LYS HET PGO A 201 5 HET PGO A 202 5 HET PGO A 203 5 HET PGO A 204 5 HET PGO A 205 5 HET PGO A 206 5 HET PGO A 207 5 HETNAM PGO S-1,2-PROPANEDIOL FORMUL 2 PGO 7(C3 H8 O2) FORMUL 9 HOH *111(H2 O) HELIX 1 AA1 ASN A 5 ARG A 10 1 6 HELIX 2 AA2 LEU A 28 GLY A 32 5 5 SHEET 1 AA1 6 ASN A 15 SER A 18 0 SHEET 2 AA1 6 TRP A 21 LEU A 27 -1 O TRP A 21 N SER A 18 SHEET 3 AA1 6 SER A 36 LEU A 42 -1 O THR A 41 N ALA A 22 SHEET 4 AA1 6 ILE A 101 ASN A 108 -1 O ILE A 101 N LEU A 42 SHEET 5 AA1 6 LEU A 56 LYS A 63 -1 N LEU A 62 O LEU A 102 SHEET 6 AA1 6 MET A 84 LEU A 87 -1 O TYR A 85 N VAL A 59 SHEET 1 AA2 3 VAL A 76 LEU A 79 0 SHEET 2 AA2 3 GLY A 66 ASP A 70 -1 N ILE A 68 O HIS A 77 SHEET 3 AA2 3 HIS A 93 PRO A 97 -1 O ARG A 96 N THR A 67 CISPEP 1 ASN A 108 PRO A 109 0 -3.39 SITE 1 AC1 5 ASP A 31 GLY A 32 HOH A 322 HOH A 391 SITE 2 AC1 5 HOH A 394 SITE 1 AC2 8 THR A 12 ASP A 13 ARG A 14 GLU A 75 SITE 2 AC2 8 VAL A 76 ARG A 92 HOH A 318 HOH A 363 SITE 1 AC3 5 LEU A 42 MET A 50 GLU A 57 TYR A 85 SITE 2 AC3 5 HOH A 326 SITE 1 AC4 3 LEU A 6 LEU A 62 HOH A 405 SITE 1 AC5 7 LYS A 29 ARG A 80 GLU A 98 THR A 112 SITE 2 AC5 7 HOH A 306 HOH A 344 HOH A 354 SITE 1 AC6 7 MET A 1 GLU A 47 ARG A 49 ASP A 70 SITE 2 AC6 7 THR A 73 ILE A 94 HOH A 385 SITE 1 AC7 4 LEU A 6 PRO A 81 HOH A 303 HOH A 402 CRYST1 72.710 72.710 52.330 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013753 0.007940 0.000000 0.00000 SCALE2 0.000000 0.015881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019109 0.00000