HEADER RNA BINDING PROTEIN/RNA 10-JUN-15 5BYM TITLE CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF YEAST PUF5P BOUND TO TITLE 2 SMX2 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR PROTEIN MPT5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 201-600; COMPND 5 SYNONYM: PROTEIN HTR1,PUMILIO HOMOLOGY DOMAIN FAMILY MEMBER 5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: MPT5, HTR1, PUF5, YGL178W, BIC834; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS PUF RNA-BINDING DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.QIU,T.M.T.HALL REVDAT 3 06-MAR-24 5BYM 1 REMARK REVDAT 2 30-SEP-15 5BYM 1 JRNL REVDAT 1 23-SEP-15 5BYM 0 JRNL AUTH D.WILINSKI,C.QIU,C.P.LAPOINTE,M.NEVIL,Z.T.CAMPBELL, JRNL AUTH 2 T.M.TANAKA HALL,M.WICKENS JRNL TITL RNA REGULATORY NETWORKS DIVERSIFIED THROUGH CURVATURE OF THE JRNL TITL 2 PUF PROTEIN SCAFFOLD. JRNL REF NAT COMMUN V. 6 8213 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26364903 JRNL DOI 10.1038/NCOMMS9213 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 12790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6817 - 5.6285 0.99 1421 156 0.2058 0.2445 REMARK 3 2 5.6285 - 4.4691 1.00 1365 151 0.2130 0.2534 REMARK 3 3 4.4691 - 3.9046 1.00 1348 150 0.2192 0.2514 REMARK 3 4 3.9046 - 3.5478 1.00 1324 149 0.2416 0.2811 REMARK 3 5 3.5478 - 3.2936 1.00 1329 141 0.2707 0.3497 REMARK 3 6 3.2936 - 3.0995 1.00 1306 154 0.3006 0.3815 REMARK 3 7 3.0995 - 2.9443 0.97 1275 136 0.3228 0.3186 REMARK 3 8 2.9443 - 2.8162 0.86 1123 129 0.3125 0.3793 REMARK 3 9 2.8162 - 2.7078 0.77 1020 113 0.3220 0.3897 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3179 REMARK 3 ANGLE : 0.712 4337 REMARK 3 CHIRALITY : 0.044 531 REMARK 3 PLANARITY : 0.004 508 REMARK 3 DIHEDRAL : 12.046 1209 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6166 40.7519 -5.7518 REMARK 3 T TENSOR REMARK 3 T11: 0.6730 T22: 0.7914 REMARK 3 T33: 1.9615 T12: -0.1562 REMARK 3 T13: 0.0092 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.0158 L22: 6.4563 REMARK 3 L33: 3.5059 L12: 3.6147 REMARK 3 L13: 2.6588 L23: 4.7584 REMARK 3 S TENSOR REMARK 3 S11: -0.2090 S12: 0.3207 S13: -0.8835 REMARK 3 S21: -0.2510 S22: -0.0145 S23: -0.7779 REMARK 3 S31: -0.3164 S32: 0.2738 S33: 0.2898 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7025 39.6905 -5.7958 REMARK 3 T TENSOR REMARK 3 T11: 0.3725 T22: 0.2782 REMARK 3 T33: 2.2387 T12: -0.1972 REMARK 3 T13: 0.0788 T23: -0.1822 REMARK 3 L TENSOR REMARK 3 L11: 1.9212 L22: 2.4818 REMARK 3 L33: 0.5822 L12: 1.9480 REMARK 3 L13: -0.8156 L23: -0.4712 REMARK 3 S TENSOR REMARK 3 S11: 0.2761 S12: -0.2629 S13: 1.2639 REMARK 3 S21: -0.0170 S22: -0.1350 S23: 0.0088 REMARK 3 S31: -0.4492 S32: 0.2454 S33: 0.0126 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0094 33.2560 -3.0164 REMARK 3 T TENSOR REMARK 3 T11: 0.3240 T22: 0.3775 REMARK 3 T33: 1.5518 T12: -0.0568 REMARK 3 T13: -0.0390 T23: -0.1003 REMARK 3 L TENSOR REMARK 3 L11: 1.7525 L22: 2.8855 REMARK 3 L33: 1.0170 L12: 1.1490 REMARK 3 L13: -1.1568 L23: -0.0015 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: -0.1810 S13: 0.5144 REMARK 3 S21: 0.2335 S22: 0.2212 S23: -0.2788 REMARK 3 S31: -0.0294 S32: 0.2338 S33: -0.0645 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9787 28.6745 6.5809 REMARK 3 T TENSOR REMARK 3 T11: 0.4088 T22: 0.4044 REMARK 3 T33: 1.0790 T12: -0.0026 REMARK 3 T13: -0.1123 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 4.2698 L22: 0.6315 REMARK 3 L33: 2.7218 L12: -0.5962 REMARK 3 L13: -2.1886 L23: 0.3128 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: -0.3015 S13: -0.2552 REMARK 3 S21: 0.0407 S22: 0.1120 S23: -0.2422 REMARK 3 S31: 0.0480 S32: 0.2527 S33: -0.0803 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 449 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9112 30.3671 21.6688 REMARK 3 T TENSOR REMARK 3 T11: 0.3316 T22: 0.5246 REMARK 3 T33: 0.8307 T12: 0.0021 REMARK 3 T13: 0.0108 T23: 0.1402 REMARK 3 L TENSOR REMARK 3 L11: 3.8630 L22: 3.2859 REMARK 3 L33: 4.1697 L12: -0.1347 REMARK 3 L13: -2.7769 L23: 2.2025 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.5708 S13: -0.4543 REMARK 3 S21: 0.2241 S22: -0.0026 S23: 0.3681 REMARK 3 S31: 0.0653 S32: 0.1737 S33: 0.1872 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 450 THROUGH 599 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8127 42.2052 31.0365 REMARK 3 T TENSOR REMARK 3 T11: 0.5190 T22: 0.7585 REMARK 3 T33: 0.7637 T12: 0.0455 REMARK 3 T13: 0.1020 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 5.2290 L22: 2.4605 REMARK 3 L33: 3.8516 L12: -0.7357 REMARK 3 L13: -0.3805 L23: 1.6914 REMARK 3 S TENSOR REMARK 3 S11: -0.1230 S12: -0.7554 S13: -0.0567 REMARK 3 S21: 0.2441 S22: -0.0651 S23: 0.6238 REMARK 3 S31: -0.3112 S32: -0.4068 S33: 0.1727 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9855 41.1750 21.7410 REMARK 3 T TENSOR REMARK 3 T11: 0.8243 T22: 1.0706 REMARK 3 T33: 1.1414 T12: -0.1336 REMARK 3 T13: -0.0782 T23: -0.2699 REMARK 3 L TENSOR REMARK 3 L11: 9.7846 L22: 1.9994 REMARK 3 L33: 6.0162 L12: 1.6827 REMARK 3 L13: -6.7058 L23: -1.4343 REMARK 3 S TENSOR REMARK 3 S11: 0.2078 S12: -0.3981 S13: -0.4638 REMARK 3 S21: -0.2275 S22: 0.4932 S23: -1.1294 REMARK 3 S31: -0.3775 S32: 0.7358 S33: -0.6555 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.23900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BYM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.1M CTBP, PH 7.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.10750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.39600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.10750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.39600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 201 REMARK 465 VAL A 473 REMARK 465 ASN A 474 REMARK 465 ASN A 475 REMARK 465 ASN A 476 REMARK 465 GLY A 477 REMARK 465 GLY A 478 REMARK 465 ALA A 479 REMARK 465 SER A 480 REMARK 465 GLN A 481 REMARK 465 ARG A 482 REMARK 465 THR A 483 REMARK 465 ALA A 484 REMARK 465 VAL A 485 REMARK 465 LEU A 535 REMARK 465 ALA A 536 REMARK 465 TYR A 537 REMARK 465 ASN A 538 REMARK 465 LYS A 539 REMARK 465 ASN A 540 REMARK 465 SER A 541 REMARK 465 ASN A 542 REMARK 465 ALA A 543 REMARK 465 ILE A 544 REMARK 465 GLY A 545 REMARK 465 GLN A 546 REMARK 465 ASN A 547 REMARK 465 SER A 548 REMARK 465 SER A 549 REMARK 465 SER A 550 REMARK 465 THR A 551 REMARK 465 LEU A 552 REMARK 465 ASN A 553 REMARK 465 TYR A 554 REMARK 465 GLY A 555 REMARK 465 ASN A 556 REMARK 465 GLY A 600 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 568 OG1 THR A 572 2.17 REMARK 500 O LEU A 450 OG SER A 454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 286 OD2 ASP A 489 4555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 212 52.90 -119.41 REMARK 500 GLU A 237 64.42 61.47 REMARK 500 SER A 238 -62.32 -131.06 REMARK 500 GLN A 367 -131.24 52.77 REMARK 500 TYR A 431 -55.87 -126.08 REMARK 500 ASN A 510 2.96 -67.15 REMARK 500 PRO A 533 1.11 -66.18 REMARK 500 ILE A 579 44.35 -142.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BZ1 RELATED DB: PDB REMARK 900 RELATED ID: 5BZ5 RELATED DB: PDB DBREF 5BYM A 201 600 UNP P39016 MPT5_YEAST 201 600 DBREF 5BYM C 1 9 PDB 5BYM 5BYM 1 9 SEQRES 1 A 400 SER MET VAL GLU ILE SER ALA LEU PRO LEU ARG ASP LEU SEQRES 2 A 400 ASP TYR ILE LYS LEU ALA THR ASP GLN PHE GLY CYS ARG SEQRES 3 A 400 PHE LEU GLN LYS LYS LEU GLU THR PRO SER GLU SER ASN SEQRES 4 A 400 MET VAL ARG ASP LEU MET TYR GLU GLN ILE LYS PRO PHE SEQRES 5 A 400 PHE LEU ASP LEU ILE LEU ASP PRO PHE GLY ASN TYR LEU SEQRES 6 A 400 VAL GLN LYS LEU CYS ASP TYR LEU THR ALA GLU GLN LYS SEQRES 7 A 400 THR LEU LEU ILE GLN THR ILE TYR PRO ASN VAL PHE GLN SEQRES 8 A 400 ILE SER ILE ASN GLN TYR GLY THR ARG SER LEU GLN LYS SEQRES 9 A 400 ILE ILE ASP THR VAL ASP ASN GLU VAL GLN ILE ASP LEU SEQRES 10 A 400 ILE ILE LYS GLY PHE SER GLN GLU PHE THR SER ILE GLU SEQRES 11 A 400 GLN VAL VAL THR LEU ILE ASN ASP LEU ASN GLY ASN HIS SEQRES 12 A 400 VAL ILE GLN LYS CYS ILE PHE LYS PHE SER PRO SER LYS SEQRES 13 A 400 PHE GLY PHE ILE ILE ASP ALA ILE VAL GLU GLN ASN ASN SEQRES 14 A 400 ILE ILE THR ILE SER THR HIS LYS HIS GLY CYS CYS VAL SEQRES 15 A 400 LEU GLN LYS LEU LEU SER VAL CYS THR LEU GLN GLN ILE SEQRES 16 A 400 PHE LYS ILE SER VAL LYS ILE VAL GLN PHE LEU PRO GLY SEQRES 17 A 400 LEU ILE ASN ASP GLN PHE GLY ASN TYR ILE ILE GLN PHE SEQRES 18 A 400 LEU LEU ASP ILE LYS GLU LEU ASP PHE TYR LEU LEU ALA SEQRES 19 A 400 GLU LEU PHE ASN ARG LEU SER ASN GLU LEU CYS GLN LEU SEQRES 20 A 400 SER CYS LEU LYS PHE SER SER ASN VAL VAL GLU LYS PHE SEQRES 21 A 400 ILE LYS LYS LEU PHE ARG ILE ILE THR GLY PHE ILE VAL SEQRES 22 A 400 ASN ASN ASN GLY GLY ALA SER GLN ARG THR ALA VAL ALA SEQRES 23 A 400 SER ASP ASP VAL ILE ASN ALA SER MET ASN ILE LEU LEU SEQRES 24 A 400 THR THR ILE ASP ILE PHE THR VAL ASN LEU ASN VAL LEU SEQRES 25 A 400 ILE ARG ASP ASN PHE GLY ASN TYR ALA LEU GLN THR LEU SEQRES 26 A 400 LEU ASP VAL LYS ASN TYR SER PRO LEU LEU ALA TYR ASN SEQRES 27 A 400 LYS ASN SER ASN ALA ILE GLY GLN ASN SER SER SER THR SEQRES 28 A 400 LEU ASN TYR GLY ASN PHE CYS ASN ASP PHE SER LEU LYS SEQRES 29 A 400 ILE GLY ASN LEU ILE VAL LEU THR LYS GLU LEU LEU PRO SEQRES 30 A 400 SER ILE LYS THR THR SER TYR ALA LYS LYS ILE LYS LEU SEQRES 31 A 400 LYS VAL LYS ALA TYR ALA GLU ALA THR GLY SEQRES 1 C 9 U G U A C U A U A HELIX 1 AA1 MET A 202 LEU A 208 1 7 HELIX 2 AA2 PRO A 209 LEU A 213 5 5 HELIX 3 AA3 ASP A 214 THR A 220 1 7 HELIX 4 AA4 ASP A 221 GLU A 233 1 13 HELIX 5 AA5 SER A 238 LYS A 250 1 13 HELIX 6 AA6 PHE A 252 ASP A 259 1 8 HELIX 7 AA7 GLY A 262 ASP A 271 1 10 HELIX 8 AA8 THR A 274 TYR A 286 1 13 HELIX 9 AA9 ASN A 288 ILE A 294 1 7 HELIX 10 AB1 TYR A 297 ASP A 307 1 11 HELIX 11 AB2 ASN A 311 SER A 323 1 13 HELIX 12 AB3 SER A 328 ASP A 338 1 11 HELIX 13 AB4 GLY A 341 PHE A 352 1 12 HELIX 14 AB5 SER A 353 LYS A 356 5 4 HELIX 15 AB6 PHE A 357 GLU A 366 1 10 HELIX 16 AB7 ASN A 368 THR A 375 1 8 HELIX 17 AB8 HIS A 376 CYS A 390 1 15 HELIX 18 AB9 THR A 391 PHE A 405 1 15 HELIX 19 AC1 PHE A 405 ILE A 410 1 6 HELIX 20 AC2 PHE A 414 LEU A 423 1 10 HELIX 21 AC3 ASP A 424 GLU A 427 5 4 HELIX 22 AC4 LEU A 428 SER A 441 1 14 HELIX 23 AC5 GLU A 443 SER A 448 1 6 HELIX 24 AC6 PHE A 452 ILE A 472 1 21 HELIX 25 AC7 SER A 487 ASN A 508 1 22 HELIX 26 AC8 ASN A 508 ILE A 513 1 6 HELIX 27 AC9 PHE A 517 ASP A 527 1 11 HELIX 28 AD1 ASP A 527 SER A 532 1 6 HELIX 29 AD2 CYS A 558 LEU A 571 1 14 HELIX 30 AD3 LEU A 575 LYS A 580 5 6 HELIX 31 AD4 TYR A 584 GLU A 597 1 14 CRYST1 94.215 100.792 49.440 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010614 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020227 0.00000