HEADER TRANSFERASE 11-JUN-15 5BYY TITLE ERK5 IN COMPLEX WITH SMALL MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 49-394; COMPND 5 SYNONYM: MAPK 7,BIG MAP KINASE 1,BMK-1,EXTRACELLULAR SIGNAL-REGULATED COMPND 6 KINASE 5,ERK-5; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK7, BMK1, ERK5, PRKM7; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ERK5 KINASE, KINASE INHIBITOR, PROTEROS BIOSTRUCTURES GMBH, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.CHEN,J.TUCKER,X.WANG,P.R.GAVINE,C.PHILIPS,M.A.AUGUSTIN,P.SCHREINER, AUTHOR 2 S.STEINBACHER,M.PRESTON,D.OGG REVDAT 3 08-MAY-24 5BYY 1 REMARK REVDAT 2 11-MAY-16 5BYY 1 JRNL REVDAT 1 04-MAY-16 5BYY 0 JRNL AUTH H.CHEN,J.TUCKER,X.WANG,P.R.GAVINE,C.PHILLIPS,M.A.AUGUSTIN, JRNL AUTH 2 P.SCHREINER,S.STEINBACHER,M.PRESTON,D.OGG JRNL TITL DISCOVERY OF A NOVEL ALLOSTERIC INHIBITOR-BINDING SITE IN JRNL TITL 2 ERK5: COMPARISON WITH THE CANONICAL KINASE HINGE ATP-BINDING JRNL TITL 3 SITE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 682 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27139631 JRNL DOI 10.1107/S2059798316004502 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.700 REMARK 3 FREE R VALUE TEST SET COUNT : 692 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 803 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.69000 REMARK 3 B22 (A**2) : 1.69000 REMARK 3 B33 (A**2) : -3.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.378 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2748 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1909 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3737 ; 1.073 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4579 ; 1.359 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 4.793 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;31.461 ;22.542 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;13.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.762 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3050 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 581 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1697 ; 0.932 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 675 ; 0.103 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2729 ; 1.744 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1051 ; 2.397 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1008 ; 3.827 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 139 REMARK 3 RESIDUE RANGE : A 365 A 422 REMARK 3 ORIGIN FOR THE GROUP (A): -6.382 -33.240 -13.054 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2883 REMARK 3 T33: 0.2493 T12: -0.0010 REMARK 3 T13: -0.0336 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 7.2714 L22: 3.5196 REMARK 3 L33: 3.0515 L12: -2.7829 REMARK 3 L13: -2.4730 L23: 2.1611 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.2882 S13: -0.5457 REMARK 3 S21: -0.1559 S22: -0.1085 S23: 0.4477 REMARK 3 S31: 0.1818 S32: -0.3932 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): 18.393 -33.695 1.043 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.5669 REMARK 3 T33: 0.2559 T12: -0.1691 REMARK 3 T13: 0.0088 T23: -0.2201 REMARK 3 L TENSOR REMARK 3 L11: 3.9872 L22: 3.4695 REMARK 3 L33: 7.0434 L12: 0.9144 REMARK 3 L13: -1.5401 L23: -0.5668 REMARK 3 S TENSOR REMARK 3 S11: 0.5076 S12: -1.0779 S13: 0.3615 REMARK 3 S21: 0.4719 S22: -0.1098 S23: -0.0088 REMARK 3 S31: -0.1008 S32: 1.1238 S33: -0.3977 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12141 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 70.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M TRIS 8.50 0.01 M MGCL2 13 % REMARK 280 PEG4000 0.18 M NA-FORMIATE 0.10 M MES, PH=6.50, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.66050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.39550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.39550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.83025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.39550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.39550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.49075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.39550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.39550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.83025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.39550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.39550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.49075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.66050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 208 REMARK 465 THR A 209 REMARK 465 SER A 210 REMARK 465 PRO A 211 REMARK 465 ALA A 212 REMARK 465 GLU A 213 REMARK 465 HIS A 214 REMARK 465 GLN A 215 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 53 CG OD1 OD2 REMARK 480 GLU A 54 CG CD OE1 OE2 REMARK 480 GLU A 59 CG CD OE1 OE2 REMARK 480 ASN A 63 CG OD1 ND2 REMARK 480 ALA A 65 CA C O CB REMARK 480 TYR A 66 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG A 73 CD NE CZ NH1 NH2 REMARK 480 LEU A 76 CG CD1 CD2 REMARK 480 ARG A 98 CD NE CZ NH1 NH2 REMARK 480 LYS A 110 CD CE NZ REMARK 480 LYS A 131 CD CE NZ REMARK 480 GLU A 192 CD OE1 OE2 REMARK 480 ASN A 193 CG OD1 ND2 REMARK 480 GLU A 195 CD OE1 OE2 REMARK 480 GLU A 238 CG CD OE1 OE2 REMARK 480 ARG A 259 CD NE CZ NH1 NH2 REMARK 480 LYS A 265 CE NZ REMARK 480 GLN A 287 CG CD OE1 NE2 REMARK 480 GLU A 292 CG CD OE1 OE2 REMARK 480 LEU A 301 CG CD1 CD2 REMARK 480 GLU A 310 CG CD OE1 OE2 REMARK 480 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 319 CD OE1 NE2 REMARK 480 LYS A 349 CE NZ REMARK 480 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 85.68 -164.55 REMARK 500 ILE A 58 -72.34 -111.48 REMARK 500 SER A 142 -166.03 -165.25 REMARK 500 ASP A 182 39.74 -152.00 REMARK 500 ASP A 200 86.40 64.91 REMARK 500 ALA A 223 -175.99 75.39 REMARK 500 SER A 235 64.11 61.30 REMARK 500 GLU A 238 87.30 -150.80 REMARK 500 GLN A 241 -30.17 -36.56 REMARK 500 ASP A 352 108.77 -163.01 REMARK 500 ARG A 392 48.41 -93.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4WG A 401 DBREF 5BYY A 49 394 UNP Q13164 MK07_HUMAN 49 394 SEQRES 1 A 346 PHE ASP VAL GLY ASP GLU TYR GLU ILE ILE GLU THR ILE SEQRES 2 A 346 GLY ASN GLY ALA TYR GLY VAL VAL SER SER ALA ARG ARG SEQRES 3 A 346 ARG LEU THR GLY GLN GLN VAL ALA ILE LYS LYS ILE PRO SEQRES 4 A 346 ASN ALA PHE ASP VAL VAL THR ASN ALA LYS ARG THR LEU SEQRES 5 A 346 ARG GLU LEU LYS ILE LEU LYS HIS PHE LYS HIS ASP ASN SEQRES 6 A 346 ILE ILE ALA ILE LYS ASP ILE LEU ARG PRO THR VAL PRO SEQRES 7 A 346 TYR GLY GLU PHE LYS SER VAL TYR VAL VAL LEU ASP LEU SEQRES 8 A 346 MET GLU SER ASP LEU HIS GLN ILE ILE HIS SER SER GLN SEQRES 9 A 346 PRO LEU THR LEU GLU HIS VAL ARG TYR PHE LEU TYR GLN SEQRES 10 A 346 LEU LEU ARG GLY LEU LYS TYR MET HIS SER ALA GLN VAL SEQRES 11 A 346 ILE HIS ARG ASP LEU LYS PRO SER ASN LEU LEU VAL ASN SEQRES 12 A 346 GLU ASN CYS GLU LEU LYS ILE GLY ASP PHE GLY MET ALA SEQRES 13 A 346 ARG GLY LEU CYS THR SER PRO ALA GLU HIS GLN TYR PHE SEQRES 14 A 346 MET THR GLU TYR VAL ALA THR ARG TRP TYR ARG ALA PRO SEQRES 15 A 346 GLU LEU MET LEU SER LEU HIS GLU TYR THR GLN ALA ILE SEQRES 16 A 346 ASP LEU TRP SER VAL GLY CYS ILE PHE GLY GLU MET LEU SEQRES 17 A 346 ALA ARG ARG GLN LEU PHE PRO GLY LYS ASN TYR VAL HIS SEQRES 18 A 346 GLN LEU GLN LEU ILE MET MET VAL LEU GLY THR PRO SER SEQRES 19 A 346 PRO ALA VAL ILE GLN ALA VAL GLY ALA GLU ARG VAL ARG SEQRES 20 A 346 ALA TYR ILE GLN SER LEU PRO PRO ARG GLN PRO VAL PRO SEQRES 21 A 346 TRP GLU THR VAL TYR PRO GLY ALA ASP ARG GLN ALA LEU SEQRES 22 A 346 SER LEU LEU GLY ARG MET LEU ARG PHE GLU PRO SER ALA SEQRES 23 A 346 ARG ILE SER ALA ALA ALA ALA LEU ARG HIS PRO PHE LEU SEQRES 24 A 346 ALA LYS TYR HIS ASP PRO ASP ASP GLU PRO ASP CYS ALA SEQRES 25 A 346 PRO PRO PHE ASP PHE ALA PHE ASP ARG GLU ALA LEU THR SEQRES 26 A 346 ARG GLU ARG ILE LYS GLU ALA ILE VAL ALA GLU ILE GLU SEQRES 27 A 346 ASP PHE HIS ALA ARG ARG GLU GLY HET 4WG A 401 35 HETNAM 4WG 2-{[2-ETHOXY-4-(4-HYDROXYPIPERIDIN-1-YL)PHENYL]AMINO}- HETNAM 2 4WG 5,11-DIMETHYL-5,11-DIHYDRO-6H-PYRIMIDO[4,5-B][1, HETNAM 3 4WG 4]BENZODIAZEPIN-6-ONE FORMUL 2 4WG C26 H30 N6 O3 FORMUL 3 HOH *17(H2 O) HELIX 1 AA1 VAL A 92 PHE A 109 1 18 HELIX 2 AA2 PRO A 126 PHE A 130 5 5 HELIX 3 AA3 LEU A 144 HIS A 149 1 6 HELIX 4 AA4 THR A 155 ALA A 176 1 22 HELIX 5 AA5 LYS A 184 SER A 186 5 3 HELIX 6 AA6 MET A 218 VAL A 222 5 5 HELIX 7 AA7 THR A 224 ARG A 228 5 5 HELIX 8 AA8 ALA A 229 SER A 235 1 7 HELIX 9 AA9 GLN A 241 ARG A 258 1 18 HELIX 10 AB1 ASN A 266 GLY A 279 1 14 HELIX 11 AB2 SER A 282 ALA A 288 1 7 HELIX 12 AB3 ALA A 291 LEU A 301 1 11 HELIX 13 AB4 PRO A 308 TYR A 313 1 6 HELIX 14 AB5 ASP A 317 LEU A 328 1 12 HELIX 15 AB6 SER A 337 ARG A 343 1 7 HELIX 16 AB7 HIS A 344 ALA A 348 5 5 HELIX 17 AB8 ASP A 352 GLU A 356 5 5 HELIX 18 AB9 PHE A 365 GLU A 370 1 6 HELIX 19 AC1 THR A 373 ARG A 392 1 20 SHEET 1 AA1 5 TYR A 55 GLY A 64 0 SHEET 2 AA1 5 GLY A 67 ARG A 74 -1 O SER A 71 N GLU A 59 SHEET 3 AA1 5 GLN A 80 ILE A 86 -1 O ILE A 83 N SER A 70 SHEET 4 AA1 5 VAL A 133 LEU A 137 -1 O LEU A 137 N ALA A 82 SHEET 5 AA1 5 ILE A 117 ILE A 120 -1 N ASP A 119 O VAL A 136 SHEET 1 AA2 3 SER A 142 ASP A 143 0 SHEET 2 AA2 3 LEU A 188 VAL A 190 -1 O VAL A 190 N SER A 142 SHEET 3 AA2 3 LEU A 196 ILE A 198 -1 O LYS A 197 N LEU A 189 CISPEP 1 ALA A 360 PRO A 361 0 -2.28 SITE 1 AC1 10 ILE A 61 ARG A 75 LEU A 76 LEU A 137 SITE 2 AC1 10 ASP A 138 MET A 140 GLU A 141 SER A 186 SITE 3 AC1 10 LEU A 189 HOH A 507 CRYST1 92.791 92.791 107.321 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009318 0.00000