HEADER TRANSFERASE 11-JUN-15 5BYZ TITLE ERK5 IN COMPLEX WITH SMALL MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 48-395; COMPND 5 SYNONYM: MAPK 7,BIG MAP KINASE 1,BMK-1,EXTRACELLULAR SIGNAL-REGULATED COMPND 6 KINASE 5,ERK-5; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK7, BMK1, ERK5, PRKM7; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ERK5, KINASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.CHEN,J.TUCKER,X.WANG,P.R.GAVINE,C.PHILIPS,M.A.AUGUSTIN,P.SCHREINER, AUTHOR 2 S.STEINBACHER,M.PRESTON,D.OGG REVDAT 3 08-MAY-24 5BYZ 1 REMARK REVDAT 2 11-MAY-16 5BYZ 1 JRNL REVDAT 1 04-MAY-16 5BYZ 0 JRNL AUTH H.CHEN,J.TUCKER,X.WANG,P.R.GAVINE,C.PHILLIPS,M.A.AUGUSTIN, JRNL AUTH 2 P.SCHREINER,S.STEINBACHER,M.PRESTON,D.OGG JRNL TITL DISCOVERY OF A NOVEL ALLOSTERIC INHIBITOR-BINDING SITE IN JRNL TITL 2 ERK5: COMPARISON WITH THE CANONICAL KINASE HINGE ATP-BINDING JRNL TITL 3 SITE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 682 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27139631 JRNL DOI 10.1107/S2059798316004502 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 58548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 3506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 272 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88000 REMARK 3 B22 (A**2) : 0.88000 REMARK 3 B33 (A**2) : -1.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.585 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3084 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2166 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4187 ; 1.203 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5238 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 5.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;32.542 ;22.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;12.014 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.934 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3445 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 657 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1843 ; 1.203 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 728 ; 0.358 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2997 ; 1.980 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1241 ; 2.854 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1190 ; 4.359 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 139 REMARK 3 RESIDUE RANGE : A 365 A 422 REMARK 3 ORIGIN FOR THE GROUP (A): -7.585 -34.298 -15.307 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.1141 REMARK 3 T33: 0.0693 T12: 0.0305 REMARK 3 T13: -0.0117 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.3859 L22: 1.9962 REMARK 3 L33: 1.6658 L12: -0.5041 REMARK 3 L13: -0.5744 L23: 0.4484 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.1322 S13: 0.0536 REMARK 3 S21: -0.0686 S22: -0.0154 S23: 0.1664 REMARK 3 S31: -0.1219 S32: -0.3329 S33: -0.0054 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): 16.696 -33.094 -1.581 REMARK 3 T TENSOR REMARK 3 T11: 0.0434 T22: 0.0653 REMARK 3 T33: 0.0628 T12: -0.0433 REMARK 3 T13: 0.0016 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.3243 L22: 1.2025 REMARK 3 L33: 2.9241 L12: 0.1264 REMARK 3 L13: -0.0724 L23: 0.1695 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: -0.1579 S13: 0.0944 REMARK 3 S21: 0.1238 S22: -0.0028 S23: -0.0135 REMARK 3 S31: -0.2057 S32: 0.2815 S33: -0.0720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62385 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 72.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.06900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11 % PEG4000 0.01 M MGCL2 0.18 M NA REMARK 280 -FORMIATE 0.10 M MES, PH=6.50 0.01 M TRIS/CL, PH=8.50, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.14000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.70050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.70050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.07000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.70050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.70050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.21000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.70050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.70050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.07000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.70050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.70050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.21000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 76 CG CD1 CD2 REMARK 480 LYS A 131 CD CE NZ REMARK 480 GLN A 287 CD OE1 NE2 REMARK 480 GLU A 292 CD OE1 OE2 REMARK 480 ARG A 318 CZ NH1 NH2 REMARK 480 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 391 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 58 -63.72 -96.32 REMARK 500 HIS A 149 59.28 -99.01 REMARK 500 ARG A 181 -2.83 73.22 REMARK 500 ASP A 182 44.49 -140.55 REMARK 500 ASP A 200 87.63 59.20 REMARK 500 MET A 218 56.42 -93.40 REMARK 500 ALA A 223 -142.72 68.58 REMARK 500 GLU A 238 89.85 -153.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4WE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 DBREF 5BYZ A 48 395 UNP Q13164 MK07_HUMAN 48 395 SEQRES 1 A 348 THR PHE ASP VAL GLY ASP GLU TYR GLU ILE ILE GLU THR SEQRES 2 A 348 ILE GLY ASN GLY ALA TYR GLY VAL VAL SER SER ALA ARG SEQRES 3 A 348 ARG ARG LEU THR GLY GLN GLN VAL ALA ILE LYS LYS ILE SEQRES 4 A 348 PRO ASN ALA PHE ASP VAL VAL THR ASN ALA LYS ARG THR SEQRES 5 A 348 LEU ARG GLU LEU LYS ILE LEU LYS HIS PHE LYS HIS ASP SEQRES 6 A 348 ASN ILE ILE ALA ILE LYS ASP ILE LEU ARG PRO THR VAL SEQRES 7 A 348 PRO TYR GLY GLU PHE LYS SER VAL TYR VAL VAL LEU ASP SEQRES 8 A 348 LEU MET GLU SER ASP LEU HIS GLN ILE ILE HIS SER SER SEQRES 9 A 348 GLN PRO LEU THR LEU GLU HIS VAL ARG TYR PHE LEU TYR SEQRES 10 A 348 GLN LEU LEU ARG GLY LEU LYS TYR MET HIS SER ALA GLN SEQRES 11 A 348 VAL ILE HIS ARG ASP LEU LYS PRO SER ASN LEU LEU VAL SEQRES 12 A 348 ASN GLU ASN CYS GLU LEU LYS ILE GLY ASP PHE GLY MET SEQRES 13 A 348 ALA ARG GLY LEU CYS THR SER PRO ALA GLU HIS GLN TYR SEQRES 14 A 348 PHE MET THR GLU TYR VAL ALA THR ARG TRP TYR ARG ALA SEQRES 15 A 348 PRO GLU LEU MET LEU SER LEU HIS GLU TYR THR GLN ALA SEQRES 16 A 348 ILE ASP LEU TRP SER VAL GLY CYS ILE PHE GLY GLU MET SEQRES 17 A 348 LEU ALA ARG ARG GLN LEU PHE PRO GLY LYS ASN TYR VAL SEQRES 18 A 348 HIS GLN LEU GLN LEU ILE MET MET VAL LEU GLY THR PRO SEQRES 19 A 348 SER PRO ALA VAL ILE GLN ALA VAL GLY ALA GLU ARG VAL SEQRES 20 A 348 ARG ALA TYR ILE GLN SER LEU PRO PRO ARG GLN PRO VAL SEQRES 21 A 348 PRO TRP GLU THR VAL TYR PRO GLY ALA ASP ARG GLN ALA SEQRES 22 A 348 LEU SER LEU LEU GLY ARG MET LEU ARG PHE GLU PRO SER SEQRES 23 A 348 ALA ARG ILE SER ALA ALA ALA ALA LEU ARG HIS PRO PHE SEQRES 24 A 348 LEU ALA LYS TYR HIS ASP PRO ASP ASP GLU PRO ASP CYS SEQRES 25 A 348 ALA PRO PRO PHE ASP PHE ALA PHE ASP ARG GLU ALA LEU SEQRES 26 A 348 THR ARG GLU ARG ILE LYS GLU ALA ILE VAL ALA GLU ILE SEQRES 27 A 348 GLU ASP PHE HIS ALA ARG ARG GLU GLY ILE HET 4WE A 401 34 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HETNAM 4WE 4-({5-FLUORO-4-[2-METHYL-1-(PROPAN-2-YL)-1H-IMIDAZOL-5- HETNAM 2 4WE YL]PYRIMIDIN-2-YL}AMINO)-N-[2-(PIPERIDIN-1-YL) HETNAM 3 4WE ETHYL]BENZAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 4WE C25 H32 F N7 O FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 HOH *336(H2 O) HELIX 1 AA1 VAL A 92 PHE A 109 1 18 HELIX 2 AA2 PRO A 126 PHE A 130 5 5 HELIX 3 AA3 LEU A 144 HIS A 149 1 6 HELIX 4 AA4 THR A 155 ALA A 176 1 22 HELIX 5 AA5 LYS A 184 SER A 186 5 3 HELIX 6 AA6 GLU A 213 PHE A 217 5 5 HELIX 7 AA7 MET A 218 VAL A 222 5 5 HELIX 8 AA8 THR A 224 ARG A 228 5 5 HELIX 9 AA9 ALA A 229 SER A 235 1 7 HELIX 10 AB1 GLN A 241 ARG A 258 1 18 HELIX 11 AB2 ASN A 266 GLY A 279 1 14 HELIX 12 AB3 SER A 282 ALA A 288 1 7 HELIX 13 AB4 ALA A 291 LEU A 301 1 11 HELIX 14 AB5 PRO A 308 TYR A 313 1 6 HELIX 15 AB6 ASP A 317 LEU A 328 1 12 HELIX 16 AB7 GLU A 331 ARG A 335 5 5 HELIX 17 AB8 SER A 337 ARG A 343 1 7 HELIX 18 AB9 HIS A 344 ALA A 348 5 5 HELIX 19 AC1 ASP A 352 GLU A 356 5 5 HELIX 20 AC2 PHE A 365 GLU A 370 1 6 HELIX 21 AC3 THR A 373 GLY A 394 1 22 SHEET 1 AA1 5 TYR A 55 GLY A 64 0 SHEET 2 AA1 5 GLY A 67 ARG A 74 -1 O SER A 71 N GLU A 59 SHEET 3 AA1 5 GLN A 80 ILE A 86 -1 O LYS A 85 N VAL A 68 SHEET 4 AA1 5 VAL A 133 LEU A 137 -1 O LEU A 137 N ALA A 82 SHEET 5 AA1 5 ILE A 117 ILE A 120 -1 N ASP A 119 O VAL A 136 SHEET 1 AA2 3 SER A 142 ASP A 143 0 SHEET 2 AA2 3 LEU A 188 VAL A 190 -1 O VAL A 190 N SER A 142 SHEET 3 AA2 3 LEU A 196 ILE A 198 -1 O LYS A 197 N LEU A 189 CISPEP 1 ALA A 360 PRO A 361 0 -0.12 SITE 1 AC1 17 ILE A 61 GLY A 62 TYR A 66 THR A 77 SITE 2 AC1 17 ALA A 82 LYS A 84 ILE A 115 LEU A 137 SITE 3 AC1 17 ASP A 138 MET A 140 ASP A 143 HIS A 145 SITE 4 AC1 17 GLN A 146 SER A 186 LEU A 189 HOH A 528 SITE 5 AC1 17 HOH A 639 SITE 1 AC2 6 LYS A 184 PRO A 185 SER A 186 HOH A 527 SITE 2 AC2 6 HOH A 531 HOH A 562 SITE 1 AC3 7 PRO A 153 LEU A 154 THR A 155 ARG A 258 SITE 2 AC3 7 ALA A 291 GLU A 292 ARG A 293 SITE 1 AC4 8 GLU A 192 GLU A 220 ARG A 225 ARG A 228 SITE 2 AC4 8 ASN A 266 TYR A 267 HOH A 518 HOH A 589 SITE 1 AC5 4 LEU A 261 VAL A 277 HOH A 520 HOH A 583 SITE 1 AC6 4 HIS A 149 ARG A 258 ARG A 293 HOH A 616 SITE 1 AC7 5 HIS A 108 TYR A 172 ALA A 360 HOH A 637 SITE 2 AC7 5 HOH A 686 CRYST1 93.401 93.401 116.280 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010707 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008600 0.00000