HEADER HYDROLASE/PROTEIN BINDING 11-JUN-15 5BZ0 TITLE CRYSTAL STRUCTURE OF IBV PAPAIN-LIKE PROTEASE PLPRO C101S MUTANT IN TITLE 2 COMPLEX WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1AB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1174-1483; COMPND 5 SYNONYM: PP1AB,ORF1AB POLYPROTEIN; COMPND 6 EC: 3.4.22.-,2.7.7.48,3.6.4.12,3.6.4.13,3.1.13.-,3.1.-.-,2.1.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE FIRST THREE RESIDUES ARE TAG. THE 56 RESIDUES COMPND 10 BESIDES TAG AT THE VERY BEGINNING ARE MISSING IN THE STRUCTURE COMPND 11 BECAUSE OF DEGRADATION DURING CRYSTALLIZATION.; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: UBIQUITIN-40S RIBOSOMAL PROTEIN S27A; COMPND 14 CHAIN: B; COMPND 15 SYNONYM: UBIQUITIN CARBOXYL EXTENSION PROTEIN 80; COMPND 16 OTHER_DETAILS: UBIQUITIN FROM BOVINE ERYTHROCYTES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN SOURCE 3 BEAUDETTE); SOURCE 4 ORGANISM_COMMON: IBV; SOURCE 5 ORGANISM_TAXID: 11122; SOURCE 6 STRAIN: BEAUDETTE; SOURCE 7 GENE: REP, 1A-1B; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 12 ORGANISM_COMMON: BOVINE; SOURCE 13 ORGANISM_TAXID: 9913 KEYWDS IBV, PAPAIN-LIKE PROTEASE, UBIQUITIN, DUB, HYDROLASE-PROTEIN BINDING KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.Y.KONG,L.M.YAN,Y.ZHANG,Z.H.RAO REVDAT 3 15-NOV-23 5BZ0 1 REMARK REVDAT 2 08-NOV-23 5BZ0 1 REMARK REVDAT 1 15-JUN-16 5BZ0 0 JRNL AUTH L.Y.KONG,L.M.YAN,Y.ZHANG,Z.H.RAO JRNL TITL CRYSTAL STRUCTURE OF IBV PAPAIN-LIKE PROTEASE PLPRO C101S JRNL TITL 2 MUTANT IN COMPLEX WITH UBIQUITIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6831 - 4.5182 1.00 2729 131 0.1872 0.1882 REMARK 3 2 4.5182 - 3.5890 1.00 2608 129 0.1626 0.2186 REMARK 3 3 3.5890 - 3.1361 1.00 2564 154 0.1890 0.2268 REMARK 3 4 3.1361 - 2.8498 1.00 2552 143 0.2067 0.2281 REMARK 3 5 2.8498 - 2.6457 1.00 2527 141 0.1988 0.2455 REMARK 3 6 2.6457 - 2.4898 1.00 2551 138 0.2050 0.2319 REMARK 3 7 2.4898 - 2.3652 1.00 2515 138 0.2106 0.2371 REMARK 3 8 2.3652 - 2.2623 1.00 2546 130 0.2041 0.2958 REMARK 3 9 2.2623 - 2.1753 1.00 2520 128 0.2015 0.2439 REMARK 3 10 2.1753 - 2.1002 1.00 2516 117 0.2105 0.2626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2606 REMARK 3 ANGLE : 1.182 3532 REMARK 3 CHIRALITY : 0.047 395 REMARK 3 PLANARITY : 0.005 452 REMARK 3 DIHEDRAL : 15.364 938 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000209754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC11 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27041 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.20700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X2Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 10,000., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.52900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.75100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.40600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.75100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.52900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.40600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 THR A 1 REMARK 465 CYS A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 ILE A 7 REMARK 465 TYR A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 LYS A 15 REMARK 465 TYR A 16 REMARK 465 ARG A 17 REMARK 465 SER A 18 REMARK 465 ILE A 19 REMARK 465 VAL A 20 REMARK 465 LEU A 21 REMARK 465 LYS A 22 REMARK 465 PRO A 23 REMARK 465 GLY A 24 REMARK 465 ASP A 25 REMARK 465 SER A 26 REMARK 465 LEU A 27 REMARK 465 GLY A 28 REMARK 465 GLN A 29 REMARK 465 PHE A 30 REMARK 465 GLY A 31 REMARK 465 GLN A 32 REMARK 465 VAL A 33 REMARK 465 TYR A 34 REMARK 465 ALA A 35 REMARK 465 LYS A 36 REMARK 465 ASN A 37 REMARK 465 LYS A 38 REMARK 465 ILE A 39 REMARK 465 VAL A 40 REMARK 465 PHE A 41 REMARK 465 THR A 42 REMARK 465 ALA A 43 REMARK 465 ASP A 44 REMARK 465 ASP A 45 REMARK 465 VAL A 46 REMARK 465 GLU A 47 REMARK 465 ASP A 48 REMARK 465 LYS A 49 REMARK 465 GLU A 50 REMARK 465 ILE A 51 REMARK 465 LEU A 52 REMARK 465 TYR A 53 REMARK 465 VAL A 54 REMARK 465 PRO A 55 REMARK 465 THR A 56 REMARK 465 LEU A 305 REMARK 465 PRO A 306 REMARK 465 VAL A 307 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 GLN A 310 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 52 O HOH B 201 1.93 REMARK 500 O GLU A 302 O HOH A 501 2.03 REMARK 500 OE2 GLU A 193 O HOH A 502 2.14 REMARK 500 O ASP A 89 O HOH A 503 2.14 REMARK 500 O HOH A 504 O HOH A 633 2.14 REMARK 500 OE1 GLU B 16 O HOH B 202 2.14 REMARK 500 OE2 GLU A 227 O HOH A 504 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 605 O HOH A 607 4555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 109 CB - CG - CD1 ANGL. DEV. = -11.6 DEGREES REMARK 500 GLU A 302 CB - CA - C ANGL. DEV. = 25.8 DEGREES REMARK 500 GLU A 302 N - CA - C ANGL. DEV. = -39.1 DEGREES REMARK 500 THR A 303 C - N - CA ANGL. DEV. = 27.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 154.61 -45.14 REMARK 500 ASP A 89 -121.67 54.90 REMARK 500 SER A 152 -155.24 -159.78 REMARK 500 SER A 212 -156.62 -154.05 REMARK 500 SER A 262 57.78 -159.35 REMARK 500 LEU A 277 -66.18 -97.12 REMARK 500 THR A 303 133.37 -170.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 301 GLU A 302 -145.07 REMARK 500 GLU A 302 THR A 303 116.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 728 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 729 DISTANCE = 7.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 180 SG REMARK 620 2 CYS A 182 SG 109.2 REMARK 620 3 CYS A 214 SG 113.6 109.4 REMARK 620 4 CYS A 217 SG 110.2 111.9 102.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 400 DBREF 5BZ0 A 1 310 UNP P0C6Y1 R1AB_IBVB 1174 1483 DBREF 5BZ0 B 1 76 UNP P62992 RS27A_BOVIN 1 76 SEQADV 5BZ0 LEU A -2 UNP P0C6Y1 EXPRESSION TAG SEQADV 5BZ0 GLY A -1 UNP P0C6Y1 EXPRESSION TAG SEQADV 5BZ0 SER A 0 UNP P0C6Y1 EXPRESSION TAG SEQADV 5BZ0 SER A 101 UNP P0C6Y1 CYS 1274 ENGINEERED MUTATION SEQRES 1 A 313 LEU GLY SER THR CYS LYS GLN LYS THR ILE TYR LEU THR SEQRES 2 A 313 GLU ASP GLY VAL LYS TYR ARG SER ILE VAL LEU LYS PRO SEQRES 3 A 313 GLY ASP SER LEU GLY GLN PHE GLY GLN VAL TYR ALA LYS SEQRES 4 A 313 ASN LYS ILE VAL PHE THR ALA ASP ASP VAL GLU ASP LYS SEQRES 5 A 313 GLU ILE LEU TYR VAL PRO THR THR ASP LYS SER ILE LEU SEQRES 6 A 313 GLU TYR TYR GLY LEU ASP ALA GLN LYS TYR VAL ILE TYR SEQRES 7 A 313 LEU GLN THR LEU ALA GLN LYS TRP ASN VAL GLN TYR ARG SEQRES 8 A 313 ASP ASN PHE LEU ILE LEU GLU TRP ARG ASP GLY ASN SER SEQRES 9 A 313 TRP ILE SER SER ALA ILE VAL LEU LEU GLN ALA ALA LYS SEQRES 10 A 313 ILE ARG PHE LYS GLY PHE LEU THR GLU ALA TRP ALA LYS SEQRES 11 A 313 LEU LEU GLY GLY ASP PRO THR ASP PHE VAL ALA TRP CYS SEQRES 12 A 313 TYR ALA SER CYS THR ALA LYS VAL GLY ASP PHE SER ASP SEQRES 13 A 313 ALA ASN TRP LEU LEU ALA ASN LEU ALA GLU HIS PHE ASP SEQRES 14 A 313 ALA ASP TYR THR ASN ALA PHE LEU LYS LYS ARG VAL SER SEQRES 15 A 313 CYS ASN CYS GLY ILE LYS SER TYR GLU LEU ARG GLY LEU SEQRES 16 A 313 GLU ALA CYS ILE GLN PRO VAL ARG ALA THR ASN LEU LEU SEQRES 17 A 313 HIS PHE LYS THR GLN TYR SER ASN CYS PRO THR CYS GLY SEQRES 18 A 313 ALA ASN ASN THR ASP GLU VAL ILE GLU ALA SER LEU PRO SEQRES 19 A 313 TYR LEU LEU LEU PHE ALA THR ASP GLY PRO ALA THR VAL SEQRES 20 A 313 ASP CYS ASP GLU ASP ALA VAL GLY THR VAL VAL PHE VAL SEQRES 21 A 313 GLY SER THR ASN SER GLY HIS CYS TYR THR GLN ALA ALA SEQRES 22 A 313 GLY GLN ALA PHE ASP ASN LEU ALA LYS ASP ARG LYS PHE SEQRES 23 A 313 GLY LYS LYS SER PRO TYR ILE THR ALA MSE TYR THR ARG SEQRES 24 A 313 PHE ALA PHE LYS ASN GLU THR SER LEU PRO VAL ALA LYS SEQRES 25 A 313 GLN SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MODRES 5BZ0 MSE A 293 MET MODIFIED RESIDUE HET MSE A 293 8 HET ZN A 400 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE C5 H11 N O2 SE FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *300(H2 O) HELIX 1 AA1 ASP A 58 GLU A 63 1 6 HELIX 2 AA2 ASP A 68 LEU A 79 1 12 HELIX 3 AA3 ASN A 100 ALA A 113 1 14 HELIX 4 AA4 PHE A 120 GLY A 130 1 11 HELIX 5 AA5 PRO A 133 CYS A 144 1 12 HELIX 6 AA6 ASP A 153 GLU A 163 1 11 HELIX 7 AA7 GLY A 191 CYS A 195 1 5 HELIX 8 AA8 ASN A 203 LYS A 208 1 6 HELIX 9 AA9 THR B 22 GLY B 35 1 14 HELIX 10 AB1 PRO B 37 ASP B 39 5 3 HELIX 11 AB2 LEU B 56 ASN B 60 5 5 SHEET 1 AA1 2 VAL A 85 ARG A 88 0 SHEET 2 AA1 2 PHE A 91 LEU A 94 -1 O ILE A 93 N GLN A 86 SHEET 1 AA2 4 GLY A 183 ARG A 190 0 SHEET 2 AA2 4 PHE A 173 CYS A 180 -1 N LYS A 176 O TYR A 187 SHEET 3 AA2 4 ASN A 220 ALA A 237 -1 O GLU A 227 N LYS A 175 SHEET 4 AA2 4 THR A 209 ASN A 213 -1 N GLN A 210 O ASP A 223 SHEET 1 AA3 4 ILE A 196 VAL A 199 0 SHEET 2 AA3 4 ASN A 220 ALA A 237 1 O LEU A 234 N GLN A 197 SHEET 3 AA3 4 LYS A 286 LYS A 300 -1 O ALA A 292 N LEU A 235 SHEET 4 AA3 4 ALA A 242 ASP A 245 -1 N ALA A 242 O TYR A 289 SHEET 1 AA4 5 GLN A 272 PHE A 274 0 SHEET 2 AA4 5 HIS A 264 ALA A 269 -1 N THR A 267 O PHE A 274 SHEET 3 AA4 5 GLY A 252 VAL A 257 -1 N VAL A 255 O TYR A 266 SHEET 4 AA4 5 LYS A 286 LYS A 300 -1 O ILE A 290 N VAL A 254 SHEET 5 AA4 5 ALA A 242 ASP A 245 -1 N ALA A 242 O TYR A 289 SHEET 1 AA5 5 THR B 12 GLU B 16 0 SHEET 2 AA5 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA5 5 THR B 66 LEU B 71 1 O LEU B 69 N LYS B 6 SHEET 4 AA5 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA5 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK C ALA A 292 N MSE A 293 1555 1555 1.31 LINK C MSE A 293 N TYR A 294 1555 1555 1.34 LINK SG CYS A 180 ZN ZN A 400 1555 1555 2.31 LINK SG CYS A 182 ZN ZN A 400 1555 1555 2.33 LINK SG CYS A 214 ZN ZN A 400 1555 1555 2.36 LINK SG CYS A 217 ZN ZN A 400 1555 1555 2.34 SITE 1 AC1 4 CYS A 180 CYS A 182 CYS A 214 CYS A 217 CRYST1 63.058 74.812 95.502 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010471 0.00000