HEADER RNA BINDING PROTEIN/RNA 11-JUN-15 5BZU TITLE CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF YEAST PUF5P BOUND TO TITLE 2 AAT2 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR PROTEIN MPT5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 201-600; COMPND 5 SYNONYM: PROTEIN HTR1,PUMILIO HOMOLOGY DOMAIN FAMILY MEMBER 5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UGUAAUA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: MPT5, HTR1, PUF5, YGL178W, BIC834; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS PUF RNA-BINDING DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.QIU,T.M.T.HALL REVDAT 3 27-SEP-23 5BZU 1 REMARK REVDAT 2 30-SEP-15 5BZU 1 JRNL REVDAT 1 23-SEP-15 5BZU 0 JRNL AUTH D.WILINSKI,C.QIU,C.P.LAPOINTE,M.NEVIL,Z.T.CAMPBELL, JRNL AUTH 2 T.M.TANAKA HALL,M.WICKENS JRNL TITL RNA REGULATORY NETWORKS DIVERSIFIED THROUGH CURVATURE OF THE JRNL TITL 2 PUF PROTEIN SCAFFOLD. JRNL REF NAT COMMUN V. 6 8213 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26364903 JRNL DOI 10.1038/NCOMMS9213 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 19884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4002 - 6.0147 0.98 1429 158 0.1901 0.1941 REMARK 3 2 6.0147 - 4.7790 0.99 1339 148 0.2232 0.2902 REMARK 3 3 4.7790 - 4.1763 0.97 1283 145 0.1788 0.2182 REMARK 3 4 4.1763 - 3.7951 0.98 1291 140 0.2064 0.2610 REMARK 3 5 3.7951 - 3.5235 0.99 1305 145 0.2060 0.2218 REMARK 3 6 3.5235 - 3.3159 0.99 1274 141 0.2357 0.2819 REMARK 3 7 3.3159 - 3.1500 0.99 1272 141 0.2650 0.2999 REMARK 3 8 3.1500 - 3.0130 0.97 1262 139 0.3073 0.3460 REMARK 3 9 3.0130 - 2.8971 0.97 1241 138 0.3278 0.4063 REMARK 3 10 2.8971 - 2.7972 0.97 1248 138 0.3207 0.4268 REMARK 3 11 2.7972 - 2.7097 0.97 1247 139 0.2990 0.3526 REMARK 3 12 2.7097 - 2.6323 0.97 1239 138 0.2953 0.3697 REMARK 3 13 2.6323 - 2.5631 0.97 1237 137 0.2770 0.3416 REMARK 3 14 2.5631 - 2.5005 0.97 1233 137 0.2590 0.3155 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3147 REMARK 3 ANGLE : 0.826 4286 REMARK 3 CHIRALITY : 0.056 523 REMARK 3 PLANARITY : 0.004 509 REMARK 3 DIHEDRAL : 13.441 1188 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9853 -37.1292 -33.5942 REMARK 3 T TENSOR REMARK 3 T11: 0.4695 T22: 0.7200 REMARK 3 T33: 0.3024 T12: -0.0172 REMARK 3 T13: -0.0036 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 7.2890 L22: 6.6861 REMARK 3 L33: 8.0348 L12: 0.4621 REMARK 3 L13: -2.1880 L23: 0.3632 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.8403 S13: 0.0388 REMARK 3 S21: -0.2941 S22: 0.0044 S23: 0.2395 REMARK 3 S31: 0.9506 S32: -1.2976 S33: -0.0927 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8506 -29.0991 -18.9623 REMARK 3 T TENSOR REMARK 3 T11: 0.2161 T22: 0.3851 REMARK 3 T33: 0.2605 T12: 0.0586 REMARK 3 T13: -0.0195 T23: 0.0751 REMARK 3 L TENSOR REMARK 3 L11: 1.4124 L22: 2.0911 REMARK 3 L33: 7.3698 L12: 0.5211 REMARK 3 L13: 0.4805 L23: 0.6864 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.3076 S13: 0.0764 REMARK 3 S21: -0.1291 S22: -0.0504 S23: -0.2048 REMARK 3 S31: 0.0003 S32: 0.3267 S33: 0.0455 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7169 -30.0782 -1.7116 REMARK 3 T TENSOR REMARK 3 T11: 0.2445 T22: 0.3118 REMARK 3 T33: 0.1847 T12: 0.0181 REMARK 3 T13: -0.0917 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 2.5106 L22: 3.1902 REMARK 3 L33: 6.8458 L12: 1.8402 REMARK 3 L13: -2.1191 L23: 1.4052 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.2204 S13: -0.2675 REMARK 3 S21: 0.0616 S22: -0.0252 S23: 0.0877 REMARK 3 S31: 0.0936 S32: -0.0809 S33: 0.0408 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2396 -33.6892 11.1963 REMARK 3 T TENSOR REMARK 3 T11: 0.3764 T22: 0.3384 REMARK 3 T33: 0.2518 T12: -0.0225 REMARK 3 T13: -0.0730 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 2.3277 L22: 3.5448 REMARK 3 L33: 4.0620 L12: 0.1474 REMARK 3 L13: 0.9344 L23: -1.9360 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: -0.2567 S13: 0.0139 REMARK 3 S21: 0.5706 S22: 0.0974 S23: -0.1625 REMARK 3 S31: -0.2559 S32: -0.3883 S33: -0.0491 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 426 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9249 -41.7955 24.4914 REMARK 3 T TENSOR REMARK 3 T11: 0.5881 T22: 0.3037 REMARK 3 T33: 0.3019 T12: -0.0845 REMARK 3 T13: -0.1336 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 6.8731 L22: 6.8406 REMARK 3 L33: 2.3022 L12: 4.4866 REMARK 3 L13: -0.2616 L23: -1.4854 REMARK 3 S TENSOR REMARK 3 S11: 0.3126 S12: -0.4844 S13: -0.1737 REMARK 3 S21: 0.6152 S22: -0.1629 S23: -0.4677 REMARK 3 S31: -0.1124 S32: -0.0919 S33: -0.1345 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 471 THROUGH 507 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3083 -41.5591 31.3574 REMARK 3 T TENSOR REMARK 3 T11: 0.9214 T22: 0.4569 REMARK 3 T33: 0.7034 T12: -0.1164 REMARK 3 T13: -0.5222 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 2.1470 L22: 1.1879 REMARK 3 L33: 0.9671 L12: -0.0899 REMARK 3 L13: 0.2735 L23: 0.5534 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: -0.2469 S13: 0.2995 REMARK 3 S21: 0.6365 S22: 0.0661 S23: -0.6594 REMARK 3 S31: -0.0373 S32: 0.4379 S33: 0.5169 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 508 THROUGH 599 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0258 -57.5714 33.0236 REMARK 3 T TENSOR REMARK 3 T11: 1.0516 T22: 0.4045 REMARK 3 T33: 0.6922 T12: -0.0806 REMARK 3 T13: -0.3757 T23: 0.1532 REMARK 3 L TENSOR REMARK 3 L11: 4.8264 L22: 0.6226 REMARK 3 L33: 3.4055 L12: -1.3147 REMARK 3 L13: 0.7575 L23: -0.8901 REMARK 3 S TENSOR REMARK 3 S11: -0.1927 S12: -0.4116 S13: -0.5885 REMARK 3 S21: 0.7240 S22: 0.0952 S23: -0.6616 REMARK 3 S31: 0.4651 S32: 0.1929 S33: 0.1188 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3036 -50.9018 4.4116 REMARK 3 T TENSOR REMARK 3 T11: 0.9378 T22: 0.6594 REMARK 3 T33: 0.5701 T12: -0.2112 REMARK 3 T13: -0.0969 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.1767 L22: 3.2724 REMARK 3 L33: 5.4243 L12: -1.9589 REMARK 3 L13: 2.3402 L23: -3.8079 REMARK 3 S TENSOR REMARK 3 S11: 0.3218 S12: 0.1515 S13: -0.0491 REMARK 3 S21: -1.2017 S22: -0.1502 S23: 0.0721 REMARK 3 S31: 2.0048 S32: -0.2666 S33: -0.3175 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BYM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, CBTP, PH 7.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.74200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.48400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.61300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 139.35500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.87100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.74200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 111.48400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 139.35500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.61300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.87100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 201 REMARK 465 MET A 202 REMARK 465 VAL A 203 REMARK 465 VAL A 473 REMARK 465 ASN A 474 REMARK 465 ASN A 475 REMARK 465 ASN A 476 REMARK 465 GLY A 477 REMARK 465 GLY A 478 REMARK 465 ALA A 479 REMARK 465 SER A 480 REMARK 465 GLN A 481 REMARK 465 ARG A 482 REMARK 465 THR A 483 REMARK 465 ALA A 484 REMARK 465 VAL A 485 REMARK 465 ALA A 536 REMARK 465 TYR A 537 REMARK 465 ASN A 538 REMARK 465 LYS A 539 REMARK 465 ASN A 540 REMARK 465 SER A 541 REMARK 465 ASN A 542 REMARK 465 ALA A 543 REMARK 465 ILE A 544 REMARK 465 GLY A 545 REMARK 465 GLN A 546 REMARK 465 ASN A 547 REMARK 465 SER A 548 REMARK 465 SER A 549 REMARK 465 SER A 550 REMARK 465 THR A 551 REMARK 465 LEU A 552 REMARK 465 ASN A 553 REMARK 465 TYR A 554 REMARK 465 GLY A 600 REMARK 465 G B 7 REMARK 465 A B 8 REMARK 465 U B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U B 6 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U B 6 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 6 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 367 -112.16 49.34 REMARK 500 CYS A 390 155.28 -49.55 REMARK 500 TYR A 431 -34.68 -140.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BYM RELATED DB: PDB REMARK 900 5BYM CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT RNA. DBREF 5BZU A 201 600 UNP P39016 MPT5_YEAST 201 600 DBREF 5BZU B 1 11 PDB 5BZU 5BZU 1 11 SEQRES 1 A 400 SER MET VAL GLU ILE SER ALA LEU PRO LEU ARG ASP LEU SEQRES 2 A 400 ASP TYR ILE LYS LEU ALA THR ASP GLN PHE GLY CYS ARG SEQRES 3 A 400 PHE LEU GLN LYS LYS LEU GLU THR PRO SER GLU SER ASN SEQRES 4 A 400 MET VAL ARG ASP LEU MET TYR GLU GLN ILE LYS PRO PHE SEQRES 5 A 400 PHE LEU ASP LEU ILE LEU ASP PRO PHE GLY ASN TYR LEU SEQRES 6 A 400 VAL GLN LYS LEU CYS ASP TYR LEU THR ALA GLU GLN LYS SEQRES 7 A 400 THR LEU LEU ILE GLN THR ILE TYR PRO ASN VAL PHE GLN SEQRES 8 A 400 ILE SER ILE ASN GLN TYR GLY THR ARG SER LEU GLN LYS SEQRES 9 A 400 ILE ILE ASP THR VAL ASP ASN GLU VAL GLN ILE ASP LEU SEQRES 10 A 400 ILE ILE LYS GLY PHE SER GLN GLU PHE THR SER ILE GLU SEQRES 11 A 400 GLN VAL VAL THR LEU ILE ASN ASP LEU ASN GLY ASN HIS SEQRES 12 A 400 VAL ILE GLN LYS CYS ILE PHE LYS PHE SER PRO SER LYS SEQRES 13 A 400 PHE GLY PHE ILE ILE ASP ALA ILE VAL GLU GLN ASN ASN SEQRES 14 A 400 ILE ILE THR ILE SER THR HIS LYS HIS GLY CYS CYS VAL SEQRES 15 A 400 LEU GLN LYS LEU LEU SER VAL CYS THR LEU GLN GLN ILE SEQRES 16 A 400 PHE LYS ILE SER VAL LYS ILE VAL GLN PHE LEU PRO GLY SEQRES 17 A 400 LEU ILE ASN ASP GLN PHE GLY ASN TYR ILE ILE GLN PHE SEQRES 18 A 400 LEU LEU ASP ILE LYS GLU LEU ASP PHE TYR LEU LEU ALA SEQRES 19 A 400 GLU LEU PHE ASN ARG LEU SER ASN GLU LEU CYS GLN LEU SEQRES 20 A 400 SER CYS LEU LYS PHE SER SER ASN VAL VAL GLU LYS PHE SEQRES 21 A 400 ILE LYS LYS LEU PHE ARG ILE ILE THR GLY PHE ILE VAL SEQRES 22 A 400 ASN ASN ASN GLY GLY ALA SER GLN ARG THR ALA VAL ALA SEQRES 23 A 400 SER ASP ASP VAL ILE ASN ALA SER MET ASN ILE LEU LEU SEQRES 24 A 400 THR THR ILE ASP ILE PHE THR VAL ASN LEU ASN VAL LEU SEQRES 25 A 400 ILE ARG ASP ASN PHE GLY ASN TYR ALA LEU GLN THR LEU SEQRES 26 A 400 LEU ASP VAL LYS ASN TYR SER PRO LEU LEU ALA TYR ASN SEQRES 27 A 400 LYS ASN SER ASN ALA ILE GLY GLN ASN SER SER SER THR SEQRES 28 A 400 LEU ASN TYR GLY ASN PHE CYS ASN ASP PHE SER LEU LYS SEQRES 29 A 400 ILE GLY ASN LEU ILE VAL LEU THR LYS GLU LEU LEU PRO SEQRES 30 A 400 SER ILE LYS THR THR SER TYR ALA LYS LYS ILE LYS LEU SEQRES 31 A 400 LYS VAL LYS ALA TYR ALA GLU ALA THR GLY SEQRES 1 B 11 U G U A A U G A U U A FORMUL 3 HOH *57(H2 O) HELIX 1 AA1 PRO A 209 LEU A 213 5 5 HELIX 2 AA2 ASP A 214 THR A 220 1 7 HELIX 3 AA3 ASP A 221 GLU A 233 1 13 HELIX 4 AA4 THR A 234 LYS A 250 1 17 HELIX 5 AA5 PHE A 252 LEU A 258 1 7 HELIX 6 AA6 PHE A 261 CYS A 270 1 10 HELIX 7 AA7 THR A 274 TYR A 286 1 13 HELIX 8 AA8 ASN A 288 ASN A 295 1 8 HELIX 9 AA9 TYR A 297 THR A 308 1 12 HELIX 10 AB1 ASN A 311 SER A 323 1 13 HELIX 11 AB2 SER A 328 ASP A 338 1 11 HELIX 12 AB3 ASN A 340 PHE A 352 1 13 HELIX 13 AB4 SER A 353 LYS A 356 5 4 HELIX 14 AB5 PHE A 357 GLU A 366 1 10 HELIX 15 AB6 ASN A 368 THR A 375 1 8 HELIX 16 AB7 HIS A 378 CYS A 390 1 13 HELIX 17 AB8 THR A 391 PHE A 405 1 15 HELIX 18 AB9 LEU A 406 LEU A 409 5 4 HELIX 19 AC1 PHE A 414 LEU A 423 1 10 HELIX 20 AC2 ASP A 424 GLU A 427 5 4 HELIX 21 AC3 LEU A 428 SER A 441 1 14 HELIX 22 AC4 GLU A 443 CYS A 449 1 7 HELIX 23 AC5 PHE A 452 PHE A 471 1 20 HELIX 24 AC6 SER A 487 ASN A 508 1 22 HELIX 25 AC7 ASN A 508 ILE A 513 1 6 HELIX 26 AC8 PHE A 517 ASP A 527 1 11 HELIX 27 AC9 VAL A 528 LEU A 535 5 8 HELIX 28 AD1 GLY A 555 GLY A 555 5 1 HELIX 29 AD2 ASN A 556 LEU A 576 1 21 HELIX 30 AD3 PRO A 577 LYS A 580 5 4 HELIX 31 AD4 TYR A 584 ALA A 598 1 15 CRYST1 107.363 107.363 167.226 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009314 0.005378 0.000000 0.00000 SCALE2 0.000000 0.010755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005980 0.00000