HEADER OXIDOREDUCTASE 11-JUN-15 5C00 TITLE MDBA PROTEIN, A THIOL-DISULFIDE OXIDOREDUCTASE FROM CORYNEBACTERIUM TITLE 2 DIPHTHERIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MDBA PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 40-244; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE (STRAIN ATCC 700971 SOURCE 3 / NCTC 13129 / BIOTYPE GRAVIS); SOURCE 4 ORGANISM_TAXID: 257309; SOURCE 5 STRAIN: ATCC 700971 / NCTC 13129 / BIOTYPE GRAVIS; SOURCE 6 GENE: DIP1880; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS MDBA, DIP1880, THIOL-DISULFIDE OXIDOREDUCTASE, STRUCTURAL GENOMICS, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, PSI-BIOLOGY, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,M.E.REARDON-ROBINSON,H.TON-THAT,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 11-DEC-19 5C00 1 REMARK REVDAT 4 27-SEP-17 5C00 1 JRNL REMARK REVDAT 3 27-JAN-16 5C00 1 JRNL REVDAT 2 09-SEP-15 5C00 1 JRNL REVDAT 1 15-JUL-15 5C00 0 JRNL AUTH M.E.REARDON-ROBINSON,J.OSIPIUK,N.JOOYA,C.CHANG,A.JOACHIMIAK, JRNL AUTH 2 A.DAS,H.TON-THAT JRNL TITL A THIOL-DISULFIDE OXIDOREDUCTASE OF THE GRAM-POSITIVE JRNL TITL 2 PATHOGEN CORYNEBACTERIUM DIPHTHERIAE IS ESSENTIAL FOR JRNL TITL 3 VIABILITY, PILUS ASSEMBLY, TOXIN PRODUCTION AND VIRULENCE. JRNL REF MOL.MICROBIOL. V. 98 1037 2015 JRNL REFN ESSN 1365-2958 JRNL PMID 26294390 JRNL DOI 10.1111/MMI.13172 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 62417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3299 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4531 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6109 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : 2.40000 REMARK 3 B33 (A**2) : -1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.996 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6508 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6086 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8830 ; 1.503 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14158 ; 0.812 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 877 ; 5.465 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 327 ;41.172 ;26.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1158 ;15.618 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.247 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 940 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7630 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1440 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3256 ; 1.373 ; 1.925 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3255 ; 1.373 ; 1.925 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4086 ; 2.087 ; 2.878 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4895 31.7246 56.1333 REMARK 3 T TENSOR REMARK 3 T11: 0.0206 T22: 0.0067 REMARK 3 T33: 0.0882 T12: -0.0008 REMARK 3 T13: 0.0035 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.1542 L22: 0.2800 REMARK 3 L33: 0.8174 L12: -0.4603 REMARK 3 L13: 0.1591 L23: 0.0200 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: -0.0150 S13: -0.1000 REMARK 3 S21: 0.0258 S22: 0.0169 S23: 0.0266 REMARK 3 S31: -0.0396 S32: -0.0305 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8285 46.9135 48.0067 REMARK 3 T TENSOR REMARK 3 T11: 0.0328 T22: 0.0120 REMARK 3 T33: 0.0824 T12: -0.0032 REMARK 3 T13: 0.0230 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.8537 L22: 0.2191 REMARK 3 L33: 0.8036 L12: 0.0512 REMARK 3 L13: -0.0631 L23: -0.1375 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.0835 S13: -0.0115 REMARK 3 S21: -0.0183 S22: 0.0026 S23: -0.0539 REMARK 3 S31: 0.0267 S32: -0.0564 S33: 0.0240 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 47 C 243 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1687 45.5323 22.1542 REMARK 3 T TENSOR REMARK 3 T11: 0.0943 T22: 0.1224 REMARK 3 T33: 0.1008 T12: -0.0582 REMARK 3 T13: -0.0104 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.8177 L22: 1.8014 REMARK 3 L33: 4.3216 L12: 0.5032 REMARK 3 L13: 0.1682 L23: -1.0979 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: 0.1942 S13: 0.2203 REMARK 3 S21: -0.1451 S22: 0.0722 S23: 0.1689 REMARK 3 S31: -0.4218 S32: 0.4172 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 49 D 239 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0431 33.6541 9.4593 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.1208 REMARK 3 T33: 0.1413 T12: -0.0316 REMARK 3 T13: -0.0023 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 1.3821 L22: 2.0334 REMARK 3 L33: 4.1276 L12: -0.0074 REMARK 3 L13: 0.3721 L23: 0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.2815 S13: -0.2819 REMARK 3 S21: 0.4791 S22: -0.0318 S23: 0.0964 REMARK 3 S31: 0.5645 S32: -0.2316 S33: -0.0154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5C00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65737 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.3 % W/V PEG 2000, 50 MM TRIS PH 8.0, REMARK 280 28.6 % V/V PEG 550 MME, MICROSEEDING, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.31050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 37 REMARK 465 ASN A 38 REMARK 465 ALA A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 GLY A 42 REMARK 465 SER B 37 REMARK 465 ASN B 38 REMARK 465 ALA B 39 REMARK 465 VAL B 40 REMARK 465 GLN B 41 REMARK 465 GLY B 42 REMARK 465 SER C 37 REMARK 465 ASN C 38 REMARK 465 ALA C 39 REMARK 465 VAL C 40 REMARK 465 GLN C 41 REMARK 465 GLY C 42 REMARK 465 LYS C 43 REMARK 465 ALA C 44 REMARK 465 HIS C 45 REMARK 465 GLN C 46 REMARK 465 SER C 244 REMARK 465 SER D 37 REMARK 465 ASN D 38 REMARK 465 ALA D 39 REMARK 465 VAL D 40 REMARK 465 GLN D 41 REMARK 465 GLY D 42 REMARK 465 LYS D 43 REMARK 465 ALA D 44 REMARK 465 HIS D 45 REMARK 465 GLN D 46 REMARK 465 ALA D 47 REMARK 465 ASN D 48 REMARK 465 GLU D 240 REMARK 465 GLN D 241 REMARK 465 ALA D 242 REMARK 465 THR D 243 REMARK 465 SER D 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 -133.08 57.28 REMARK 500 THR A 61 -166.11 -122.34 REMARK 500 ASN A 75 62.29 -117.77 REMARK 500 ASP A 130 41.38 -153.92 REMARK 500 ALA B 47 -136.08 52.17 REMARK 500 ASP B 127 -1.28 62.81 REMARK 500 ASP B 130 43.45 -150.62 REMARK 500 ASN C 48 -22.31 75.75 REMARK 500 ASN C 48 -18.54 72.93 REMARK 500 ASP C 52 33.86 -92.04 REMARK 500 THR C 61 -168.89 -121.02 REMARK 500 SER C 67 -1.93 68.75 REMARK 500 ASP C 130 40.12 -151.48 REMARK 500 THR D 61 -169.35 -128.39 REMARK 500 ASN D 75 33.81 -98.25 REMARK 500 ASP D 130 40.14 -150.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC113238 RELATED DB: TARGETTRACK DBREF 5C00 A 40 244 UNP Q6NFK7 Q6NFK7_CORDI 40 244 DBREF 5C00 B 40 244 UNP Q6NFK7 Q6NFK7_CORDI 40 244 DBREF 5C00 C 40 244 UNP Q6NFK7 Q6NFK7_CORDI 40 244 DBREF 5C00 D 40 244 UNP Q6NFK7 Q6NFK7_CORDI 40 244 SEQADV 5C00 SER A 37 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 ASN A 38 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 ALA A 39 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 SER B 37 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 ASN B 38 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 ALA B 39 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 SER C 37 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 ASN C 38 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 ALA C 39 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 SER D 37 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 ASN D 38 UNP Q6NFK7 EXPRESSION TAG SEQADV 5C00 ALA D 39 UNP Q6NFK7 EXPRESSION TAG SEQRES 1 A 208 SER ASN ALA VAL GLN GLY LYS ALA HIS GLN ALA ASN LYS SEQRES 2 A 208 TYR ALA ASP TYR ASP LYS GLU SER VAL SER PHE THR GLY SEQRES 3 A 208 SER VAL THR ASP SER ALA ILE VAL LEU LYS ALA VAL ASN SEQRES 4 A 208 ALA LYS LYS ASP ALA LYS LYS ILE ASP PHE TYR GLU ASP SEQRES 5 A 208 PHE SER CYS PRO HIS CYS ALA GLU LEU GLY GLU VAL THR SEQRES 6 A 208 ASP GLY PRO MSE THR LYS ALA ILE GLU ASN GLY ASP ILE SEQRES 7 A 208 VAL VAL ASN LEU ARG ILE LEU ASN PHE LEU ASP ARG ASP SEQRES 8 A 208 GLY ASP ASP GLY ASN SER THR LYS ALA GLY ALA ALA ALA SEQRES 9 A 208 LEU ALA VAL ALA GLN SER GLY ASP TRP GLU THR TYR TRP SEQRES 10 A 208 ASN TYR ARG ALA LEU LEU MSE LYS GLU GLN LYS ASN ILE SEQRES 11 A 208 TYR GLY LYS TRP GLY ASP ASN ASP PHE ALA ASP VAL ALA SEQRES 12 A 208 LYS SER LEU GLY ALA SER ASP GLU VAL THR GLN LYS ILE SEQRES 13 A 208 ARG GLU GLY GLY ALA LYS GLU ASP PHE ARG LYS PHE ALA SEQRES 14 A 208 GLU ALA ASN SER LYS LYS LEU GLU LYS ASP GLY GLY SER SEQRES 15 A 208 VAL SER SER PRO ARG VAL PHE ILE ASP GLY LYS GLU VAL SEQRES 16 A 208 LYS ASN GLY ILE GLU THR TRP VAL GLU GLN ALA THR SER SEQRES 1 B 208 SER ASN ALA VAL GLN GLY LYS ALA HIS GLN ALA ASN LYS SEQRES 2 B 208 TYR ALA ASP TYR ASP LYS GLU SER VAL SER PHE THR GLY SEQRES 3 B 208 SER VAL THR ASP SER ALA ILE VAL LEU LYS ALA VAL ASN SEQRES 4 B 208 ALA LYS LYS ASP ALA LYS LYS ILE ASP PHE TYR GLU ASP SEQRES 5 B 208 PHE SER CYS PRO HIS CYS ALA GLU LEU GLY GLU VAL THR SEQRES 6 B 208 ASP GLY PRO MSE THR LYS ALA ILE GLU ASN GLY ASP ILE SEQRES 7 B 208 VAL VAL ASN LEU ARG ILE LEU ASN PHE LEU ASP ARG ASP SEQRES 8 B 208 GLY ASP ASP GLY ASN SER THR LYS ALA GLY ALA ALA ALA SEQRES 9 B 208 LEU ALA VAL ALA GLN SER GLY ASP TRP GLU THR TYR TRP SEQRES 10 B 208 ASN TYR ARG ALA LEU LEU MSE LYS GLU GLN LYS ASN ILE SEQRES 11 B 208 TYR GLY LYS TRP GLY ASP ASN ASP PHE ALA ASP VAL ALA SEQRES 12 B 208 LYS SER LEU GLY ALA SER ASP GLU VAL THR GLN LYS ILE SEQRES 13 B 208 ARG GLU GLY GLY ALA LYS GLU ASP PHE ARG LYS PHE ALA SEQRES 14 B 208 GLU ALA ASN SER LYS LYS LEU GLU LYS ASP GLY GLY SER SEQRES 15 B 208 VAL SER SER PRO ARG VAL PHE ILE ASP GLY LYS GLU VAL SEQRES 16 B 208 LYS ASN GLY ILE GLU THR TRP VAL GLU GLN ALA THR SER SEQRES 1 C 208 SER ASN ALA VAL GLN GLY LYS ALA HIS GLN ALA ASN LYS SEQRES 2 C 208 TYR ALA ASP TYR ASP LYS GLU SER VAL SER PHE THR GLY SEQRES 3 C 208 SER VAL THR ASP SER ALA ILE VAL LEU LYS ALA VAL ASN SEQRES 4 C 208 ALA LYS LYS ASP ALA LYS LYS ILE ASP PHE TYR GLU ASP SEQRES 5 C 208 PHE SER CYS PRO HIS CYS ALA GLU LEU GLY GLU VAL THR SEQRES 6 C 208 ASP GLY PRO MSE THR LYS ALA ILE GLU ASN GLY ASP ILE SEQRES 7 C 208 VAL VAL ASN LEU ARG ILE LEU ASN PHE LEU ASP ARG ASP SEQRES 8 C 208 GLY ASP ASP GLY ASN SER THR LYS ALA GLY ALA ALA ALA SEQRES 9 C 208 LEU ALA VAL ALA GLN SER GLY ASP TRP GLU THR TYR TRP SEQRES 10 C 208 ASN TYR ARG ALA LEU LEU MSE LYS GLU GLN LYS ASN ILE SEQRES 11 C 208 TYR GLY LYS TRP GLY ASP ASN ASP PHE ALA ASP VAL ALA SEQRES 12 C 208 LYS SER LEU GLY ALA SER ASP GLU VAL THR GLN LYS ILE SEQRES 13 C 208 ARG GLU GLY GLY ALA LYS GLU ASP PHE ARG LYS PHE ALA SEQRES 14 C 208 GLU ALA ASN SER LYS LYS LEU GLU LYS ASP GLY GLY SER SEQRES 15 C 208 VAL SER SER PRO ARG VAL PHE ILE ASP GLY LYS GLU VAL SEQRES 16 C 208 LYS ASN GLY ILE GLU THR TRP VAL GLU GLN ALA THR SER SEQRES 1 D 208 SER ASN ALA VAL GLN GLY LYS ALA HIS GLN ALA ASN LYS SEQRES 2 D 208 TYR ALA ASP TYR ASP LYS GLU SER VAL SER PHE THR GLY SEQRES 3 D 208 SER VAL THR ASP SER ALA ILE VAL LEU LYS ALA VAL ASN SEQRES 4 D 208 ALA LYS LYS ASP ALA LYS LYS ILE ASP PHE TYR GLU ASP SEQRES 5 D 208 PHE SER CYS PRO HIS CYS ALA GLU LEU GLY GLU VAL THR SEQRES 6 D 208 ASP GLY PRO MSE THR LYS ALA ILE GLU ASN GLY ASP ILE SEQRES 7 D 208 VAL VAL ASN LEU ARG ILE LEU ASN PHE LEU ASP ARG ASP SEQRES 8 D 208 GLY ASP ASP GLY ASN SER THR LYS ALA GLY ALA ALA ALA SEQRES 9 D 208 LEU ALA VAL ALA GLN SER GLY ASP TRP GLU THR TYR TRP SEQRES 10 D 208 ASN TYR ARG ALA LEU LEU MSE LYS GLU GLN LYS ASN ILE SEQRES 11 D 208 TYR GLY LYS TRP GLY ASP ASN ASP PHE ALA ASP VAL ALA SEQRES 12 D 208 LYS SER LEU GLY ALA SER ASP GLU VAL THR GLN LYS ILE SEQRES 13 D 208 ARG GLU GLY GLY ALA LYS GLU ASP PHE ARG LYS PHE ALA SEQRES 14 D 208 GLU ALA ASN SER LYS LYS LEU GLU LYS ASP GLY GLY SER SEQRES 15 D 208 VAL SER SER PRO ARG VAL PHE ILE ASP GLY LYS GLU VAL SEQRES 16 D 208 LYS ASN GLY ILE GLU THR TRP VAL GLU GLN ALA THR SER MODRES 5C00 MSE A 105 MET MODIFIED RESIDUE MODRES 5C00 MSE A 160 MET MODIFIED RESIDUE MODRES 5C00 MSE B 105 MET MODIFIED RESIDUE MODRES 5C00 MSE B 160 MET MODIFIED RESIDUE MODRES 5C00 MSE C 105 MET MODIFIED RESIDUE MODRES 5C00 MSE C 160 MET MODIFIED RESIDUE MODRES 5C00 MSE D 105 MET MODIFIED RESIDUE MODRES 5C00 MSE D 160 MET MODIFIED RESIDUE HET MSE A 105 8 HET MSE A 160 8 HET MSE B 105 13 HET MSE B 160 8 HET MSE C 105 8 HET MSE C 160 13 HET MSE D 105 8 HET MSE D 160 13 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 HOH *398(H2 O) HELIX 1 AA1 CYS A 91 ASN A 111 1 21 HELIX 2 AA2 ASN A 122 ARG A 126 5 5 HELIX 3 AA3 GLY A 131 SER A 146 1 16 HELIX 4 AA4 ASP A 148 GLU A 162 1 15 HELIX 5 AA5 GLU A 162 TYR A 167 1 6 HELIX 6 AA6 GLY A 171 LEU A 182 1 12 HELIX 7 AA7 SER A 185 GLY A 195 1 11 HELIX 8 AA8 ALA A 197 GLY A 217 1 21 HELIX 9 AA9 GLY A 234 GLU A 236 5 3 HELIX 10 AB1 THR A 237 SER A 244 1 8 HELIX 11 AB2 CYS B 91 ASN B 111 1 21 HELIX 12 AB3 ASN B 122 ARG B 126 5 5 HELIX 13 AB4 GLY B 131 SER B 146 1 16 HELIX 14 AB5 ASP B 148 GLU B 162 1 15 HELIX 15 AB6 GLU B 162 TYR B 167 1 6 HELIX 16 AB7 GLY B 171 LEU B 182 1 12 HELIX 17 AB8 SER B 185 GLU B 194 1 10 HELIX 18 AB9 ALA B 197 GLY B 217 1 21 HELIX 19 AC1 GLY B 234 GLU B 236 5 3 HELIX 20 AC2 THR B 237 THR B 243 1 7 HELIX 21 AC3 CYS C 91 ASN C 111 1 21 HELIX 22 AC4 ASN C 122 ARG C 126 5 5 HELIX 23 AC5 GLY C 131 SER C 146 1 16 HELIX 24 AC6 ASP C 148 GLU C 162 1 15 HELIX 25 AC7 GLU C 162 TYR C 167 1 6 HELIX 26 AC8 GLY C 171 LEU C 182 1 12 HELIX 27 AC9 SER C 185 GLU C 194 1 10 HELIX 28 AD1 ALA C 197 GLY C 217 1 21 HELIX 29 AD2 GLY C 234 GLU C 236 5 3 HELIX 30 AD3 THR C 237 THR C 243 1 7 HELIX 31 AD4 CYS D 91 GLU D 110 1 20 HELIX 32 AD5 ASN D 122 ARG D 126 5 5 HELIX 33 AD6 GLY D 131 SER D 146 1 16 HELIX 34 AD7 ASP D 148 GLU D 162 1 15 HELIX 35 AD8 GLU D 162 TYR D 167 1 6 HELIX 36 AD9 GLY D 171 LEU D 182 1 12 HELIX 37 AE1 SER D 185 GLY D 195 1 11 HELIX 38 AE2 ALA D 197 GLY D 216 1 20 HELIX 39 AE3 GLY D 234 TRP D 238 5 5 SHEET 1 AA1 6 THR A 61 THR A 65 0 SHEET 2 AA1 6 ALA A 68 LYS A 72 -1 O LYS A 72 N THR A 61 SHEET 3 AA1 6 ILE A 114 LEU A 121 -1 O LEU A 118 N ILE A 69 SHEET 4 AA1 6 LYS A 81 ASP A 88 1 N GLU A 87 O LEU A 121 SHEET 5 AA1 6 ARG A 223 ILE A 226 -1 O ARG A 223 N TYR A 86 SHEET 6 AA1 6 LYS A 229 GLU A 230 -1 O LYS A 229 N ILE A 226 SHEET 1 AA2 6 THR B 61 THR B 65 0 SHEET 2 AA2 6 ALA B 68 LYS B 72 -1 O VAL B 70 N SER B 63 SHEET 3 AA2 6 ILE B 114 LEU B 121 -1 O LEU B 118 N ILE B 69 SHEET 4 AA2 6 LYS B 81 ASP B 88 1 N ILE B 83 O ASN B 117 SHEET 5 AA2 6 ARG B 223 ILE B 226 -1 O ARG B 223 N TYR B 86 SHEET 6 AA2 6 LYS B 229 GLU B 230 -1 O LYS B 229 N ILE B 226 SHEET 1 AA3 6 THR C 61 THR C 65 0 SHEET 2 AA3 6 ALA C 68 LYS C 72 -1 O VAL C 70 N SER C 63 SHEET 3 AA3 6 ILE C 114 LEU C 121 -1 O LEU C 118 N ILE C 69 SHEET 4 AA3 6 LYS C 81 ASP C 88 1 N ILE C 83 O ASN C 117 SHEET 5 AA3 6 ARG C 223 ILE C 226 -1 O ARG C 223 N TYR C 86 SHEET 6 AA3 6 LYS C 229 GLU C 230 -1 O LYS C 229 N ILE C 226 SHEET 1 AA4 6 THR D 61 THR D 65 0 SHEET 2 AA4 6 ALA D 68 LYS D 72 -1 O VAL D 70 N SER D 63 SHEET 3 AA4 6 ILE D 114 LEU D 121 -1 O LEU D 118 N ILE D 69 SHEET 4 AA4 6 LYS D 81 ASP D 88 1 N PHE D 85 O ARG D 119 SHEET 5 AA4 6 ARG D 223 ILE D 226 -1 O ARG D 223 N TYR D 86 SHEET 6 AA4 6 LYS D 229 GLU D 230 -1 O LYS D 229 N ILE D 226 LINK C PRO A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N THR A 106 1555 1555 1.33 LINK C LEU A 159 N MSE A 160 1555 1555 1.33 LINK C MSE A 160 N LYS A 161 1555 1555 1.32 LINK C PRO B 104 N MSE B 105 1555 1555 1.35 LINK C MSE B 105 N THR B 106 1555 1555 1.32 LINK C LEU B 159 N MSE B 160 1555 1555 1.33 LINK C MSE B 160 N LYS B 161 1555 1555 1.33 LINK C PRO C 104 N MSE C 105 1555 1555 1.34 LINK C MSE C 105 N THR C 106 1555 1555 1.33 LINK C LEU C 159 N MSE C 160 1555 1555 1.32 LINK C MSE C 160 N LYS C 161 1555 1555 1.34 LINK C PRO D 104 N MSE D 105 1555 1555 1.34 LINK C MSE D 105 N THR D 106 1555 1555 1.34 LINK C LEU D 159 N MSE D 160 1555 1555 1.34 LINK C MSE D 160 N LYS D 161 1555 1555 1.32 CISPEP 1 SER A 221 PRO A 222 0 -4.91 CISPEP 2 SER A 221 PRO A 222 0 -4.03 CISPEP 3 SER B 221 PRO B 222 0 -3.60 CISPEP 4 SER C 221 PRO C 222 0 -3.31 CISPEP 5 SER D 221 PRO D 222 0 -1.12 CRYST1 61.532 76.621 72.586 90.00 90.17 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016252 0.000000 0.000048 0.00000 SCALE2 0.000000 0.013051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013777 0.00000