HEADER PROTEIN TRANSPORT 15-JUN-15 5C22 TITLE CRYSTAL STRUCTURE OF ZN-BOUND HLYD FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOMAL HEMOLYSIN D; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 57-333; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: HLYD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HLYD, TYPE I SECRETION SYSTEM, ZN SAD, MULTICRYSTAL AVERAGING, KEYWDS 2 PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.C.HA,J.S.KIM REVDAT 3 20-MAR-24 5C22 1 JRNL REMARK LINK REVDAT 2 16-MAR-16 5C22 1 JRNL REVDAT 1 17-FEB-16 5C22 0 JRNL AUTH J.S.KIM,S.SONG,M.LEE,S.LEE,K.LEE,N.C.HA JRNL TITL CRYSTAL STRUCTURE OF A SOLUBLE FRAGMENT OF THE MEMBRANE JRNL TITL 2 FUSION PROTEIN HLYD IN A TYPE I SECRETION SYSTEM OF JRNL TITL 3 GRAM-NEGATIVE BACTERIA JRNL REF STRUCTURE V. 24 477 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26833388 JRNL DOI 10.1016/J.STR.2015.12.012 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 108529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.330 REMARK 3 FREE R VALUE TEST SET COUNT : 3614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2283 - 6.8074 0.98 4332 153 0.1809 0.1907 REMARK 3 2 6.8074 - 5.4086 0.99 4350 147 0.2204 0.2377 REMARK 3 3 5.4086 - 4.7264 0.99 4368 145 0.1713 0.2375 REMARK 3 4 4.7264 - 4.2950 0.99 4372 155 0.1642 0.1774 REMARK 3 5 4.2950 - 3.9875 0.99 4354 149 0.1734 0.2227 REMARK 3 6 3.9875 - 3.7527 0.99 4364 150 0.1852 0.1923 REMARK 3 7 3.7527 - 3.5649 0.99 4387 151 0.1914 0.2653 REMARK 3 8 3.5649 - 3.4098 0.99 4368 148 0.2076 0.2292 REMARK 3 9 3.4098 - 3.2786 0.98 4337 149 0.2250 0.2442 REMARK 3 10 3.2786 - 3.1656 0.97 4282 150 0.2416 0.3092 REMARK 3 11 3.1656 - 3.0666 0.96 4232 152 0.2437 0.2748 REMARK 3 12 3.0666 - 2.9790 0.95 4202 139 0.2451 0.2792 REMARK 3 13 2.9790 - 2.9006 0.93 4098 144 0.2547 0.3050 REMARK 3 14 2.9006 - 2.8299 0.93 4091 148 0.2641 0.3105 REMARK 3 15 2.8299 - 2.7656 0.91 4020 138 0.2757 0.3352 REMARK 3 16 2.7656 - 2.7067 0.91 4016 146 0.2692 0.3144 REMARK 3 17 2.7067 - 2.6526 0.90 3997 138 0.2687 0.2980 REMARK 3 18 2.6526 - 2.6025 0.89 3929 130 0.2795 0.3299 REMARK 3 19 2.6025 - 2.5561 0.88 3866 131 0.2952 0.3541 REMARK 3 20 2.5561 - 2.5128 0.86 3834 134 0.2943 0.3187 REMARK 3 21 2.5128 - 2.4722 0.86 3810 131 0.2999 0.3612 REMARK 3 22 2.4722 - 2.4342 0.86 3789 123 0.3078 0.3531 REMARK 3 23 2.4342 - 2.3984 0.84 3743 130 0.3178 0.3913 REMARK 3 24 2.3984 - 2.3646 0.84 3645 123 0.3368 0.4059 REMARK 3 25 2.3646 - 2.3327 0.78 3499 121 0.3303 0.3376 REMARK 3 26 2.3327 - 2.3024 0.60 2630 89 0.3287 0.4198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8666 REMARK 3 ANGLE : 0.758 11663 REMARK 3 CHIRALITY : 0.030 1388 REMARK 3 PLANARITY : 0.003 1491 REMARK 3 DIHEDRAL : 15.047 3455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5C22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28245 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 37.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 65.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE TRIHYDRATE, REMARK 280 0.2M CALCIUM ACETATE, 14% PEG 8000, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.43250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.68900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.23800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.68900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.43250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.23800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 94 REMARK 465 ALA A 95 REMARK 465 GLU A 362 REMARK 465 ASP A 363 REMARK 465 ASP A 364 REMARK 465 THR A 365 REMARK 465 LEU A 366 REMARK 465 GLU A 367 REMARK 465 VAL A 368 REMARK 465 THR A 369 REMARK 465 ALA A 370 REMARK 465 LEU A 371 REMARK 465 VAL A 372 REMARK 465 MET B 94 REMARK 465 GLU B 362 REMARK 465 ASP B 363 REMARK 465 ASP B 364 REMARK 465 THR B 365 REMARK 465 LEU B 366 REMARK 465 GLU B 367 REMARK 465 VAL B 368 REMARK 465 THR B 369 REMARK 465 ALA B 370 REMARK 465 LEU B 371 REMARK 465 VAL B 372 REMARK 465 MET C 94 REMARK 465 ALA C 95 REMARK 465 GLU C 114 REMARK 465 GLY C 115 REMARK 465 GLU C 116 REMARK 465 SER C 117 REMARK 465 VAL C 118 REMARK 465 ARG C 119 REMARK 465 LYS C 120 REMARK 465 GLY C 121 REMARK 465 ASP C 122 REMARK 465 VAL C 123 REMARK 465 LEU C 124 REMARK 465 PRO C 361 REMARK 465 GLU C 362 REMARK 465 ASP C 363 REMARK 465 ASP C 364 REMARK 465 THR C 365 REMARK 465 LEU C 366 REMARK 465 GLU C 367 REMARK 465 VAL C 368 REMARK 465 THR C 369 REMARK 465 ALA C 370 REMARK 465 LEU C 371 REMARK 465 VAL C 372 REMARK 465 MET D 94 REMARK 465 ALA D 95 REMARK 465 GLU D 362 REMARK 465 ASP D 363 REMARK 465 ASP D 364 REMARK 465 THR D 365 REMARK 465 LEU D 366 REMARK 465 GLU D 367 REMARK 465 VAL D 368 REMARK 465 THR D 369 REMARK 465 ALA D 370 REMARK 465 LEU D 371 REMARK 465 VAL D 372 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 158 OE2 GLU C 161 1.77 REMARK 500 O TYR B 226 OG SER B 230 2.05 REMARK 500 NZ LYS D 303 O HOH D 501 2.16 REMARK 500 OE1 GLU D 299 O HOH D 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 247 51.04 38.74 REMARK 500 LYS A 342 41.73 -108.65 REMARK 500 LYS C 342 49.36 -99.57 REMARK 500 VAL C 343 -33.27 -32.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 149 OE2 REMARK 620 2 HIS D 344 NE2 103.6 REMARK 620 3 HOH D 567 O 102.6 1.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 322 OE1 REMARK 620 2 GLU A 322 OE2 54.1 REMARK 620 3 HIS B 252 NE2 82.4 74.5 REMARK 620 4 GLU B 256 OE2 84.2 77.7 3.1 REMARK 620 5 HOH B 516 O 81.3 75.6 2.3 2.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 149 OE1 REMARK 620 2 HIS C 344 NE2 98.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 252 NE2 REMARK 620 2 GLU D 312 OE2 147.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C21 RELATED DB: PDB DBREF 5C22 A 96 372 UNP O87505 O87505_ECOLX 57 333 DBREF 5C22 B 96 372 UNP O87505 O87505_ECOLX 57 333 DBREF 5C22 C 96 372 UNP O87505 O87505_ECOLX 57 333 DBREF 5C22 D 96 372 UNP O87505 O87505_ECOLX 57 333 SEQADV 5C22 MET A 94 UNP O87505 EXPRESSION TAG SEQADV 5C22 ALA A 95 UNP O87505 EXPRESSION TAG SEQADV 5C22 ARG A 294 UNP O87505 GLN 255 CONFLICT SEQADV 5C22 MET B 94 UNP O87505 EXPRESSION TAG SEQADV 5C22 ALA B 95 UNP O87505 EXPRESSION TAG SEQADV 5C22 ARG B 294 UNP O87505 GLN 255 CONFLICT SEQADV 5C22 MET C 94 UNP O87505 EXPRESSION TAG SEQADV 5C22 ALA C 95 UNP O87505 EXPRESSION TAG SEQADV 5C22 ARG C 294 UNP O87505 GLN 255 CONFLICT SEQADV 5C22 MET D 94 UNP O87505 EXPRESSION TAG SEQADV 5C22 ALA D 95 UNP O87505 EXPRESSION TAG SEQADV 5C22 ARG D 294 UNP O87505 GLN 255 CONFLICT SEQRES 1 A 279 MET ALA SER LYS GLU ILE LYS PRO ILE GLU ASN SER ILE SEQRES 2 A 279 VAL LYS GLU ILE ILE VAL LYS GLU GLY GLU SER VAL ARG SEQRES 3 A 279 LYS GLY ASP VAL LEU LEU LYS LEU THR ALA LEU GLY ALA SEQRES 4 A 279 GLU ALA ASP THR LEU LYS THR GLN SER SER LEU LEU GLN SEQRES 5 A 279 THR ARG LEU GLU GLN THR ARG TYR GLN ILE LEU SER ARG SEQRES 6 A 279 SER ILE GLU LEU ASN LYS LEU PRO GLU LEU LYS LEU PRO SEQRES 7 A 279 ASP GLU PRO TYR PHE GLN ASN VAL SER GLU GLU GLU VAL SEQRES 8 A 279 LEU ARG LEU THR SER LEU ILE LYS GLU GLN PHE SER THR SEQRES 9 A 279 TRP GLN ASN GLN LYS TYR GLN LYS GLU LEU ASN LEU ASP SEQRES 10 A 279 LYS LYS ARG ALA GLU ARG LEU THR ILE LEU ALA ARG ILE SEQRES 11 A 279 ASN ARG TYR GLU ASN LEU SER ARG VAL GLU LYS SER ARG SEQRES 12 A 279 LEU ASP ASP PHE ARG SER LEU LEU HIS LYS GLN ALA ILE SEQRES 13 A 279 ALA LYS HIS ALA VAL LEU GLU GLN GLU ASN LYS TYR VAL SEQRES 14 A 279 GLU ALA ALA ASN GLU LEU ARG VAL TYR LYS SER GLN LEU SEQRES 15 A 279 GLU GLN ILE GLU SER GLU ILE LEU SER ALA LYS GLU GLU SEQRES 16 A 279 TYR GLN LEU VAL THR ARG LEU PHE LYS ASN GLU ILE LEU SEQRES 17 A 279 ASP LYS LEU ARG GLN THR THR ASP ASN ILE GLU LEU LEU SEQRES 18 A 279 THR LEU GLU LEU GLU LYS ASN GLU GLU ARG GLN GLN ALA SEQRES 19 A 279 SER VAL ILE ARG ALA PRO VAL SER GLY LYS VAL GLN GLN SEQRES 20 A 279 LEU LYS VAL HIS THR GLU GLY GLY VAL VAL THR THR ALA SEQRES 21 A 279 GLU THR LEU MET VAL ILE VAL PRO GLU ASP ASP THR LEU SEQRES 22 A 279 GLU VAL THR ALA LEU VAL SEQRES 1 B 279 MET ALA SER LYS GLU ILE LYS PRO ILE GLU ASN SER ILE SEQRES 2 B 279 VAL LYS GLU ILE ILE VAL LYS GLU GLY GLU SER VAL ARG SEQRES 3 B 279 LYS GLY ASP VAL LEU LEU LYS LEU THR ALA LEU GLY ALA SEQRES 4 B 279 GLU ALA ASP THR LEU LYS THR GLN SER SER LEU LEU GLN SEQRES 5 B 279 THR ARG LEU GLU GLN THR ARG TYR GLN ILE LEU SER ARG SEQRES 6 B 279 SER ILE GLU LEU ASN LYS LEU PRO GLU LEU LYS LEU PRO SEQRES 7 B 279 ASP GLU PRO TYR PHE GLN ASN VAL SER GLU GLU GLU VAL SEQRES 8 B 279 LEU ARG LEU THR SER LEU ILE LYS GLU GLN PHE SER THR SEQRES 9 B 279 TRP GLN ASN GLN LYS TYR GLN LYS GLU LEU ASN LEU ASP SEQRES 10 B 279 LYS LYS ARG ALA GLU ARG LEU THR ILE LEU ALA ARG ILE SEQRES 11 B 279 ASN ARG TYR GLU ASN LEU SER ARG VAL GLU LYS SER ARG SEQRES 12 B 279 LEU ASP ASP PHE ARG SER LEU LEU HIS LYS GLN ALA ILE SEQRES 13 B 279 ALA LYS HIS ALA VAL LEU GLU GLN GLU ASN LYS TYR VAL SEQRES 14 B 279 GLU ALA ALA ASN GLU LEU ARG VAL TYR LYS SER GLN LEU SEQRES 15 B 279 GLU GLN ILE GLU SER GLU ILE LEU SER ALA LYS GLU GLU SEQRES 16 B 279 TYR GLN LEU VAL THR ARG LEU PHE LYS ASN GLU ILE LEU SEQRES 17 B 279 ASP LYS LEU ARG GLN THR THR ASP ASN ILE GLU LEU LEU SEQRES 18 B 279 THR LEU GLU LEU GLU LYS ASN GLU GLU ARG GLN GLN ALA SEQRES 19 B 279 SER VAL ILE ARG ALA PRO VAL SER GLY LYS VAL GLN GLN SEQRES 20 B 279 LEU LYS VAL HIS THR GLU GLY GLY VAL VAL THR THR ALA SEQRES 21 B 279 GLU THR LEU MET VAL ILE VAL PRO GLU ASP ASP THR LEU SEQRES 22 B 279 GLU VAL THR ALA LEU VAL SEQRES 1 C 279 MET ALA SER LYS GLU ILE LYS PRO ILE GLU ASN SER ILE SEQRES 2 C 279 VAL LYS GLU ILE ILE VAL LYS GLU GLY GLU SER VAL ARG SEQRES 3 C 279 LYS GLY ASP VAL LEU LEU LYS LEU THR ALA LEU GLY ALA SEQRES 4 C 279 GLU ALA ASP THR LEU LYS THR GLN SER SER LEU LEU GLN SEQRES 5 C 279 THR ARG LEU GLU GLN THR ARG TYR GLN ILE LEU SER ARG SEQRES 6 C 279 SER ILE GLU LEU ASN LYS LEU PRO GLU LEU LYS LEU PRO SEQRES 7 C 279 ASP GLU PRO TYR PHE GLN ASN VAL SER GLU GLU GLU VAL SEQRES 8 C 279 LEU ARG LEU THR SER LEU ILE LYS GLU GLN PHE SER THR SEQRES 9 C 279 TRP GLN ASN GLN LYS TYR GLN LYS GLU LEU ASN LEU ASP SEQRES 10 C 279 LYS LYS ARG ALA GLU ARG LEU THR ILE LEU ALA ARG ILE SEQRES 11 C 279 ASN ARG TYR GLU ASN LEU SER ARG VAL GLU LYS SER ARG SEQRES 12 C 279 LEU ASP ASP PHE ARG SER LEU LEU HIS LYS GLN ALA ILE SEQRES 13 C 279 ALA LYS HIS ALA VAL LEU GLU GLN GLU ASN LYS TYR VAL SEQRES 14 C 279 GLU ALA ALA ASN GLU LEU ARG VAL TYR LYS SER GLN LEU SEQRES 15 C 279 GLU GLN ILE GLU SER GLU ILE LEU SER ALA LYS GLU GLU SEQRES 16 C 279 TYR GLN LEU VAL THR ARG LEU PHE LYS ASN GLU ILE LEU SEQRES 17 C 279 ASP LYS LEU ARG GLN THR THR ASP ASN ILE GLU LEU LEU SEQRES 18 C 279 THR LEU GLU LEU GLU LYS ASN GLU GLU ARG GLN GLN ALA SEQRES 19 C 279 SER VAL ILE ARG ALA PRO VAL SER GLY LYS VAL GLN GLN SEQRES 20 C 279 LEU LYS VAL HIS THR GLU GLY GLY VAL VAL THR THR ALA SEQRES 21 C 279 GLU THR LEU MET VAL ILE VAL PRO GLU ASP ASP THR LEU SEQRES 22 C 279 GLU VAL THR ALA LEU VAL SEQRES 1 D 279 MET ALA SER LYS GLU ILE LYS PRO ILE GLU ASN SER ILE SEQRES 2 D 279 VAL LYS GLU ILE ILE VAL LYS GLU GLY GLU SER VAL ARG SEQRES 3 D 279 LYS GLY ASP VAL LEU LEU LYS LEU THR ALA LEU GLY ALA SEQRES 4 D 279 GLU ALA ASP THR LEU LYS THR GLN SER SER LEU LEU GLN SEQRES 5 D 279 THR ARG LEU GLU GLN THR ARG TYR GLN ILE LEU SER ARG SEQRES 6 D 279 SER ILE GLU LEU ASN LYS LEU PRO GLU LEU LYS LEU PRO SEQRES 7 D 279 ASP GLU PRO TYR PHE GLN ASN VAL SER GLU GLU GLU VAL SEQRES 8 D 279 LEU ARG LEU THR SER LEU ILE LYS GLU GLN PHE SER THR SEQRES 9 D 279 TRP GLN ASN GLN LYS TYR GLN LYS GLU LEU ASN LEU ASP SEQRES 10 D 279 LYS LYS ARG ALA GLU ARG LEU THR ILE LEU ALA ARG ILE SEQRES 11 D 279 ASN ARG TYR GLU ASN LEU SER ARG VAL GLU LYS SER ARG SEQRES 12 D 279 LEU ASP ASP PHE ARG SER LEU LEU HIS LYS GLN ALA ILE SEQRES 13 D 279 ALA LYS HIS ALA VAL LEU GLU GLN GLU ASN LYS TYR VAL SEQRES 14 D 279 GLU ALA ALA ASN GLU LEU ARG VAL TYR LYS SER GLN LEU SEQRES 15 D 279 GLU GLN ILE GLU SER GLU ILE LEU SER ALA LYS GLU GLU SEQRES 16 D 279 TYR GLN LEU VAL THR ARG LEU PHE LYS ASN GLU ILE LEU SEQRES 17 D 279 ASP LYS LEU ARG GLN THR THR ASP ASN ILE GLU LEU LEU SEQRES 18 D 279 THR LEU GLU LEU GLU LYS ASN GLU GLU ARG GLN GLN ALA SEQRES 19 D 279 SER VAL ILE ARG ALA PRO VAL SER GLY LYS VAL GLN GLN SEQRES 20 D 279 LEU LYS VAL HIS THR GLU GLY GLY VAL VAL THR THR ALA SEQRES 21 D 279 GLU THR LEU MET VAL ILE VAL PRO GLU ASP ASP THR LEU SEQRES 22 D 279 GLU VAL THR ALA LEU VAL HET ZN A 401 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN D 401 1 HET ZN D 402 1 HETNAM ZN ZINC ION FORMUL 5 ZN 5(ZN 2+) FORMUL 10 HOH *151(H2 O) HELIX 1 AA1 GLY A 131 ASN A 163 1 33 HELIX 2 AA2 GLU A 173 GLN A 177 5 5 HELIX 3 AA3 SER A 180 SER A 242 1 63 HELIX 4 AA4 ALA A 250 GLN A 326 1 77 HELIX 5 AA5 GLY B 131 ASN B 163 1 33 HELIX 6 AA6 GLU B 173 GLN B 177 5 5 HELIX 7 AA7 SER B 180 HIS B 245 1 66 HELIX 8 AA8 ALA B 250 GLN B 326 1 77 HELIX 9 AA9 GLY C 131 ASN C 163 1 33 HELIX 10 AB1 GLU C 173 GLN C 177 5 5 HELIX 11 AB2 SER C 180 HIS C 245 1 66 HELIX 12 AB3 ALA C 250 GLN C 326 1 77 HELIX 13 AB4 LYS C 342 GLU C 346 5 5 HELIX 14 AB5 GLY D 131 ASN D 163 1 33 HELIX 15 AB6 GLU D 173 GLN D 177 5 5 HELIX 16 AB7 SER D 180 HIS D 245 1 66 HELIX 17 AB8 ALA D 250 GLN D 326 1 77 HELIX 18 AB9 LYS D 342 GLU D 346 5 5 SHEET 1 AA1 4 LYS A 97 ILE A 99 0 SHEET 2 AA1 4 MET A 357 VAL A 360 -1 O MET A 357 N ILE A 99 SHEET 3 AA1 4 GLY A 336 GLN A 339 -1 N LYS A 337 O VAL A 360 SHEET 4 AA1 4 SER A 117 VAL A 118 -1 N VAL A 118 O GLY A 336 SHEET 1 AA2 4 SER A 328 ARG A 331 0 SHEET 2 AA2 4 VAL A 123 ALA A 129 -1 N LEU A 127 O SER A 328 SHEET 3 AA2 4 SER A 105 ILE A 110 -1 N ILE A 106 O THR A 128 SHEET 4 AA2 4 VAL A 349 VAL A 350 -1 O VAL A 350 N SER A 105 SHEET 1 AA3 4 LYS B 97 ILE B 99 0 SHEET 2 AA3 4 MET B 357 VAL B 360 -1 O ILE B 359 N LYS B 97 SHEET 3 AA3 4 GLY B 336 GLN B 339 -1 N GLN B 339 O VAL B 358 SHEET 4 AA3 4 SER B 117 VAL B 118 -1 N VAL B 118 O GLY B 336 SHEET 1 AA4 4 SER B 328 ARG B 331 0 SHEET 2 AA4 4 VAL B 123 ALA B 129 -1 N LEU B 127 O SER B 328 SHEET 3 AA4 4 SER B 105 ILE B 110 -1 N ILE B 106 O THR B 128 SHEET 4 AA4 4 VAL B 349 VAL B 350 -1 O VAL B 350 N SER B 105 SHEET 1 AA5 3 LYS C 97 ILE C 99 0 SHEET 2 AA5 3 MET C 357 VAL C 360 -1 O ILE C 359 N LYS C 97 SHEET 3 AA5 3 LYS C 337 GLN C 339 -1 N GLN C 339 O VAL C 358 SHEET 1 AA6 4 SER C 328 VAL C 329 0 SHEET 2 AA6 4 LYS C 126 ALA C 129 -1 N LEU C 127 O SER C 328 SHEET 3 AA6 4 SER C 105 GLU C 109 -1 N ILE C 106 O THR C 128 SHEET 4 AA6 4 VAL C 349 VAL C 350 -1 O VAL C 350 N SER C 105 SHEET 1 AA7 4 LYS D 97 ILE D 99 0 SHEET 2 AA7 4 MET D 357 VAL D 360 -1 O ILE D 359 N LYS D 97 SHEET 3 AA7 4 GLY D 336 GLN D 339 -1 N LYS D 337 O VAL D 360 SHEET 4 AA7 4 SER D 117 VAL D 118 -1 N VAL D 118 O GLY D 336 SHEET 1 AA8 4 SER D 328 ARG D 331 0 SHEET 2 AA8 4 VAL D 123 ALA D 129 -1 N LEU D 127 O SER D 328 SHEET 3 AA8 4 SER D 105 ILE D 110 -1 N GLU D 109 O LYS D 126 SHEET 4 AA8 4 VAL D 349 VAL D 350 -1 O VAL D 350 N SER D 105 LINK OE2 GLU A 149 ZN ZN D 402 1555 2454 2.26 LINK NE2 HIS A 252 ZN ZN A 401 1555 1555 2.18 LINK OE1 GLU A 322 ZN ZN B 402 1555 4545 2.57 LINK OE2 GLU A 322 ZN ZN B 402 1555 4545 2.22 LINK OE1 GLU B 149 ZN ZN B 401 1555 1555 2.30 LINK NE2 HIS B 252 ZN ZN B 402 1555 1555 2.14 LINK OE2 GLU B 256 ZN ZN B 402 1555 1555 2.41 LINK ZN ZN B 401 NE2 HIS C 344 2444 1555 2.41 LINK ZN ZN B 402 O HOH B 516 1555 1555 2.24 LINK NE2 HIS D 252 ZN ZN D 401 1555 1555 2.24 LINK OE2 GLU D 312 ZN ZN D 401 1555 4555 2.12 LINK NE2 HIS D 344 ZN ZN D 402 1555 1555 2.53 LINK ZN ZN D 402 O HOH D 567 1555 1555 2.45 CISPEP 1 VAL A 360 PRO A 361 0 -1.65 CISPEP 2 VAL D 360 PRO D 361 0 0.26 SITE 1 AC1 2 HIS A 252 GLU B 322 SITE 1 AC2 2 GLU B 149 HIS C 344 SITE 1 AC3 4 GLU A 322 HIS B 252 GLU B 256 HOH B 516 SITE 1 AC4 4 HIS D 252 GLU D 256 GLU D 312 HOH D 565 SITE 1 AC5 4 GLU A 149 HOH A 528 HIS D 344 HOH D 567 CRYST1 80.865 94.476 181.378 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012366 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005513 0.00000