HEADER HYDROLASE/HYDROLASE INHIBITOR 15-JUN-15 5C2E TITLE PDE10 COMPLEXED WITH6-CHLORO-N-[(2,4-DIMETHYLTHIAZOL-5-YL)METHYL]-5- TITLE 2 METHYL-2-[2-(2-PYRIDYL)ETHOXY]PYRIMIDIN-4-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP AND CAMP-INHIBITED CGMP 3',5'-CYCLIC PHOSPHODIESTERASE COMPND 3 10A; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CATALYTIC DOMAIN; COMPND 6 EC: 3.1.4.17, 3.1.4.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE10A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHODIESTERASE, INHIBITOR, COMPLEX, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.YAN REVDAT 3 13-MAR-24 5C2E 1 SOURCE REVDAT 2 27-SEP-23 5C2E 1 JRNL REMARK LINK REVDAT 1 02-DEC-15 5C2E 0 JRNL AUTH W.D.SHIPE,S.S.SHARIK,J.C.BARROW,G.B.MCGAUGHEY,C.R.THEBERGE, JRNL AUTH 2 J.M.USLANER,Y.YAN,J.J.RENGER,S.M.SMITH,P.J.COLEMAN,C.D.COX JRNL TITL DISCOVERY AND OPTIMIZATION OF A SERIES OF PYRIMIDINE-BASED JRNL TITL 2 PHOSPHODIESTERASE 10A (PDE10A) INHIBITORS THROUGH FRAGMENT JRNL TITL 3 SCREENING, STRUCTURE-BASED DESIGN, AND PARALLEL SYNTHESIS. JRNL REF J.MED.CHEM. V. 58 7888 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26378882 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00983 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 38368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1934 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.15 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.10 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2715 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2862 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2572 REMARK 3 BIN R VALUE (WORKING SET) : 0.2849 REMARK 3 BIN FREE R VALUE : 0.3108 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -25.15490 REMARK 3 B22 (A**2) : 16.21750 REMARK 3 B33 (A**2) : 8.93740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.406 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.297 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.219 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.296 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.220 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.879 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5402 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7323 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1871 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 128 ; 8.000 ; HARMONIC REMARK 3 GENERAL PLANES : 788 ; 8.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5402 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 696 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6482 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.47 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2OUN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.0, 20% PEG3350, 200MM REMARK 280 MGCL2, AND 10MM 2-MERCAPTOETHANOL, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 418 REMARK 465 GLY A 419 REMARK 465 SER A 420 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 SER A 428 REMARK 465 SER A 429 REMARK 465 GLY A 430 REMARK 465 LEU A 431 REMARK 465 VAL A 432 REMARK 465 PRO A 433 REMARK 465 ARG A 434 REMARK 465 GLY A 435 REMARK 465 SER A 436 REMARK 465 GLU A 760 REMARK 465 THR A 761 REMARK 465 ALA A 762 REMARK 465 THR A 763 REMARK 465 TRP A 764 REMARK 465 ILE A 765 REMARK 465 SER A 766 REMARK 465 SER A 767 REMARK 465 PRO A 768 REMARK 465 SER A 769 REMARK 465 VAL A 770 REMARK 465 ALA A 771 REMARK 465 GLN A 772 REMARK 465 LYS A 773 REMARK 465 ALA A 774 REMARK 465 ALA A 775 REMARK 465 ALA A 776 REMARK 465 SER A 777 REMARK 465 GLU A 778 REMARK 465 ASP A 779 REMARK 465 MET B 418 REMARK 465 GLY B 419 REMARK 465 SER B 420 REMARK 465 SER B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 465 SER B 428 REMARK 465 SER B 429 REMARK 465 GLY B 430 REMARK 465 LEU B 431 REMARK 465 VAL B 432 REMARK 465 PRO B 433 REMARK 465 ARG B 434 REMARK 465 GLY B 435 REMARK 465 SER B 436 REMARK 465 GLU B 760 REMARK 465 THR B 761 REMARK 465 ALA B 762 REMARK 465 THR B 763 REMARK 465 TRP B 764 REMARK 465 ILE B 765 REMARK 465 SER B 766 REMARK 465 SER B 767 REMARK 465 PRO B 768 REMARK 465 SER B 769 REMARK 465 VAL B 770 REMARK 465 ALA B 771 REMARK 465 GLN B 772 REMARK 465 LYS B 773 REMARK 465 ALA B 774 REMARK 465 ALA B 775 REMARK 465 ALA B 776 REMARK 465 SER B 777 REMARK 465 GLU B 778 REMARK 465 ASP B 779 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 443 OG REMARK 470 GLU A 444 CG CD OE1 OE2 REMARK 470 GLN A 447 CG CD OE1 NE2 REMARK 470 GLN A 451 CG CD OE1 NE2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 LYS B 633 CG CD CE NZ REMARK 470 GLU B 637 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 466 4.30 -68.03 REMARK 500 CYS A 488 -62.14 -107.04 REMARK 500 TYR A 514 -54.59 -122.23 REMARK 500 ASN A 534 33.35 -143.71 REMARK 500 ASN A 599 88.17 -67.79 REMARK 500 TYR B 514 -55.44 -126.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 519 NE2 REMARK 620 2 HIS A 553 NE2 94.2 REMARK 620 3 ASP A 554 OD2 93.4 84.6 REMARK 620 4 ASP A 664 OD1 91.9 87.4 170.7 REMARK 620 5 HOH A 903 O 165.6 97.7 79.7 96.7 REMARK 620 6 HOH A 939 O 88.8 174.8 99.5 88.2 80.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 554 OD1 REMARK 620 2 HOH A 903 O 102.6 REMARK 620 3 HOH A 904 O 87.3 99.1 REMARK 620 4 HOH A 908 O 172.5 84.8 90.1 REMARK 620 5 HOH A 932 O 84.7 169.5 88.6 88.2 REMARK 620 6 HOH A 950 O 91.4 89.2 171.7 90.2 83.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 519 NE2 REMARK 620 2 HIS B 553 NE2 89.1 REMARK 620 3 ASP B 554 OD2 92.5 81.0 REMARK 620 4 ASP B 664 OD1 82.6 83.8 164.1 REMARK 620 5 HOH B 918 O 168.6 101.7 85.6 102.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 554 OD1 REMARK 620 2 HOH B 905 O 80.4 REMARK 620 3 HOH B 906 O 160.6 80.2 REMARK 620 4 HOH B 918 O 85.4 91.4 95.4 REMARK 620 5 HOH B 928 O 101.3 177.5 98.0 86.9 REMARK 620 6 HOH B 939 O 96.0 88.9 83.2 178.5 92.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4PX A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4Y1 B 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C1W RELATED DB: PDB REMARK 900 RELATED ID: 5C28 RELATED DB: PDB REMARK 900 RELATED ID: 5C29 RELATED DB: PDB REMARK 900 RELATED ID: 5C2A RELATED DB: PDB REMARK 900 RELATED ID: 5C2H RELATED DB: PDB DBREF 5C2E A 439 779 UNP Q9Y233 PDE10_HUMAN 449 789 DBREF 5C2E B 439 779 UNP Q9Y233 PDE10_HUMAN 449 789 SEQADV 5C2E MET A 418 UNP Q9Y233 INITIATING METHIONINE SEQADV 5C2E GLY A 419 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER A 420 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER A 421 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS A 422 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS A 423 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS A 424 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS A 425 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS A 426 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS A 427 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER A 428 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER A 429 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E GLY A 430 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E LEU A 431 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E VAL A 432 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E PRO A 433 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E ARG A 434 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E GLY A 435 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER A 436 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS A 437 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E MET A 438 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E MET B 418 UNP Q9Y233 INITIATING METHIONINE SEQADV 5C2E GLY B 419 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER B 420 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER B 421 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS B 422 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS B 423 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS B 424 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS B 425 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS B 426 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS B 427 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER B 428 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER B 429 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E GLY B 430 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E LEU B 431 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E VAL B 432 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E PRO B 433 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E ARG B 434 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E GLY B 435 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E SER B 436 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E HIS B 437 UNP Q9Y233 EXPRESSION TAG SEQADV 5C2E MET B 438 UNP Q9Y233 EXPRESSION TAG SEQRES 1 A 362 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 362 LEU VAL PRO ARG GLY SER HIS MET SER ILE CYS THR SER SEQRES 3 A 362 GLU GLU TRP GLN GLY LEU MET GLN PHE THR LEU PRO VAL SEQRES 4 A 362 ARG LEU CYS LYS GLU ILE GLU LEU PHE HIS PHE ASP ILE SEQRES 5 A 362 GLY PRO PHE GLU ASN MET TRP PRO GLY ILE PHE VAL TYR SEQRES 6 A 362 MET VAL HIS ARG SER CYS GLY THR SER CYS PHE GLU LEU SEQRES 7 A 362 GLU LYS LEU CYS ARG PHE ILE MET SER VAL LYS LYS ASN SEQRES 8 A 362 TYR ARG ARG VAL PRO TYR HIS ASN TRP LYS HIS ALA VAL SEQRES 9 A 362 THR VAL ALA HIS CYS MET TYR ALA ILE LEU GLN ASN ASN SEQRES 10 A 362 HIS THR LEU PHE THR ASP LEU GLU ARG LYS GLY LEU LEU SEQRES 11 A 362 ILE ALA CYS LEU CYS HIS ASP LEU ASP HIS ARG GLY PHE SEQRES 12 A 362 SER ASN SER TYR LEU GLN LYS PHE ASP HIS PRO LEU ALA SEQRES 13 A 362 ALA LEU TYR SER THR SER THR MET GLU GLN HIS HIS PHE SEQRES 14 A 362 SER GLN THR VAL SER ILE LEU GLN LEU GLU GLY HIS ASN SEQRES 15 A 362 ILE PHE SER THR LEU SER SER SER GLU TYR GLU GLN VAL SEQRES 16 A 362 LEU GLU ILE ILE ARG LYS ALA ILE ILE ALA THR ASP LEU SEQRES 17 A 362 ALA LEU TYR PHE GLY ASN ARG LYS GLN LEU GLU GLU MET SEQRES 18 A 362 TYR GLN THR GLY SER LEU ASN LEU ASN ASN GLN SER HIS SEQRES 19 A 362 ARG ASP ARG VAL ILE GLY LEU MET MET THR ALA CYS ASP SEQRES 20 A 362 LEU CYS SER VAL THR LYS LEU TRP PRO VAL THR LYS LEU SEQRES 21 A 362 THR ALA ASN ASP ILE TYR ALA GLU PHE TRP ALA GLU GLY SEQRES 22 A 362 ASP GLU MET LYS LYS LEU GLY ILE GLN PRO ILE PRO MET SEQRES 23 A 362 MET ASP ARG ASP LYS LYS ASP GLU VAL PRO GLN GLY GLN SEQRES 24 A 362 LEU GLY PHE TYR ASN ALA VAL ALA ILE PRO CYS TYR THR SEQRES 25 A 362 THR LEU THR GLN ILE LEU PRO PRO THR GLU PRO LEU LEU SEQRES 26 A 362 LYS ALA CYS ARG ASP ASN LEU SER GLN TRP GLU LYS VAL SEQRES 27 A 362 ILE ARG GLY GLU GLU THR ALA THR TRP ILE SER SER PRO SEQRES 28 A 362 SER VAL ALA GLN LYS ALA ALA ALA SER GLU ASP SEQRES 1 B 362 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 362 LEU VAL PRO ARG GLY SER HIS MET SER ILE CYS THR SER SEQRES 3 B 362 GLU GLU TRP GLN GLY LEU MET GLN PHE THR LEU PRO VAL SEQRES 4 B 362 ARG LEU CYS LYS GLU ILE GLU LEU PHE HIS PHE ASP ILE SEQRES 5 B 362 GLY PRO PHE GLU ASN MET TRP PRO GLY ILE PHE VAL TYR SEQRES 6 B 362 MET VAL HIS ARG SER CYS GLY THR SER CYS PHE GLU LEU SEQRES 7 B 362 GLU LYS LEU CYS ARG PHE ILE MET SER VAL LYS LYS ASN SEQRES 8 B 362 TYR ARG ARG VAL PRO TYR HIS ASN TRP LYS HIS ALA VAL SEQRES 9 B 362 THR VAL ALA HIS CYS MET TYR ALA ILE LEU GLN ASN ASN SEQRES 10 B 362 HIS THR LEU PHE THR ASP LEU GLU ARG LYS GLY LEU LEU SEQRES 11 B 362 ILE ALA CYS LEU CYS HIS ASP LEU ASP HIS ARG GLY PHE SEQRES 12 B 362 SER ASN SER TYR LEU GLN LYS PHE ASP HIS PRO LEU ALA SEQRES 13 B 362 ALA LEU TYR SER THR SER THR MET GLU GLN HIS HIS PHE SEQRES 14 B 362 SER GLN THR VAL SER ILE LEU GLN LEU GLU GLY HIS ASN SEQRES 15 B 362 ILE PHE SER THR LEU SER SER SER GLU TYR GLU GLN VAL SEQRES 16 B 362 LEU GLU ILE ILE ARG LYS ALA ILE ILE ALA THR ASP LEU SEQRES 17 B 362 ALA LEU TYR PHE GLY ASN ARG LYS GLN LEU GLU GLU MET SEQRES 18 B 362 TYR GLN THR GLY SER LEU ASN LEU ASN ASN GLN SER HIS SEQRES 19 B 362 ARG ASP ARG VAL ILE GLY LEU MET MET THR ALA CYS ASP SEQRES 20 B 362 LEU CYS SER VAL THR LYS LEU TRP PRO VAL THR LYS LEU SEQRES 21 B 362 THR ALA ASN ASP ILE TYR ALA GLU PHE TRP ALA GLU GLY SEQRES 22 B 362 ASP GLU MET LYS LYS LEU GLY ILE GLN PRO ILE PRO MET SEQRES 23 B 362 MET ASP ARG ASP LYS LYS ASP GLU VAL PRO GLN GLY GLN SEQRES 24 B 362 LEU GLY PHE TYR ASN ALA VAL ALA ILE PRO CYS TYR THR SEQRES 25 B 362 THR LEU THR GLN ILE LEU PRO PRO THR GLU PRO LEU LEU SEQRES 26 B 362 LYS ALA CYS ARG ASP ASN LEU SER GLN TRP GLU LYS VAL SEQRES 27 B 362 ILE ARG GLY GLU GLU THR ALA THR TRP ILE SER SER PRO SEQRES 28 B 362 SER VAL ALA GLN LYS ALA ALA ALA SER GLU ASP HET ZN A 801 1 HET MG A 802 1 HET 4PX A 803 26 HET ZN B 801 1 HET MG B 802 1 HET 4Y1 B 803 26 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM 4PX 3-(1-HYDROXY-2-METHYLPROPAN-2-YL)-5-PHENYL-3,5-DIHYDRO- HETNAM 2 4PX 1H-IMIDAZO[4,5-C][1,8]NAPHTHYRIDINE-2,4-DIONE HETNAM 4Y1 6-CHLORO-N-[(2,4-DIMETHYL-1,3-THIAZOL-5-YL)METHYL]-5- HETNAM 2 4Y1 METHYL-2-[2-(PYRIDIN-2-YL)ETHOXY]PYRIMIDIN-4-AMINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 4PX C19 H18 N4 O3 FORMUL 8 4Y1 C18 H20 CL N5 O S FORMUL 9 HOH *117(H2 O) HELIX 1 AA1 THR A 442 GLN A 451 1 10 HELIX 2 AA2 PRO A 455 LYS A 460 1 6 HELIX 3 AA3 ILE A 469 ASN A 474 5 6 HELIX 4 AA4 MET A 475 CYS A 488 1 14 HELIX 5 AA5 GLU A 494 ASN A 508 1 15 HELIX 6 AA6 ASN A 516 ASN A 534 1 19 HELIX 7 AA7 HIS A 535 PHE A 538 5 4 HELIX 8 AA8 THR A 539 HIS A 553 1 15 HELIX 9 AA9 SER A 561 PHE A 568 1 8 HELIX 10 AB1 HIS A 570 TYR A 576 1 7 HELIX 11 AB2 SER A 579 GLN A 594 1 16 HELIX 12 AB3 SER A 605 THR A 623 1 19 HELIX 13 AB4 ASP A 624 THR A 641 1 18 HELIX 14 AB5 ASN A 648 LEU A 665 1 18 HELIX 15 AB6 CYS A 666 LYS A 670 5 5 HELIX 16 AB7 LEU A 671 LEU A 696 1 26 HELIX 17 AB8 ILE A 701 ASP A 710 5 10 HELIX 18 AB9 GLU A 711 VAL A 723 1 13 HELIX 19 AC1 VAL A 723 LEU A 735 1 13 HELIX 20 AC2 THR A 738 GLY A 758 1 21 HELIX 21 AC3 THR B 442 GLN B 451 1 10 HELIX 22 AC4 PRO B 455 CYS B 459 5 5 HELIX 23 AC5 LYS B 460 LEU B 464 5 5 HELIX 24 AC6 PHE B 472 ASN B 474 5 3 HELIX 25 AC7 MET B 475 CYS B 488 1 14 HELIX 26 AC8 GLU B 494 ASN B 508 1 15 HELIX 27 AC9 ASN B 516 ASN B 534 1 19 HELIX 28 AD1 THR B 539 HIS B 553 1 15 HELIX 29 AD2 SER B 561 PHE B 568 1 8 HELIX 30 AD3 HIS B 570 TYR B 576 1 7 HELIX 31 AD4 SER B 579 GLN B 594 1 16 HELIX 32 AD5 SER B 605 ALA B 622 1 18 HELIX 33 AD6 ASP B 624 THR B 641 1 18 HELIX 34 AD7 ASN B 648 LEU B 665 1 18 HELIX 35 AD8 CYS B 666 LYS B 670 5 5 HELIX 36 AD9 LEU B 671 LYS B 695 1 25 HELIX 37 AE1 ILE B 701 ASP B 710 5 10 HELIX 38 AE2 GLU B 711 VAL B 723 1 13 HELIX 39 AE3 VAL B 723 LEU B 735 1 13 HELIX 40 AE4 THR B 738 GLY B 758 1 21 LINK NE2 HIS A 519 ZN ZN A 801 1555 1555 2.12 LINK NE2 HIS A 553 ZN ZN A 801 1555 1555 2.09 LINK OD2 ASP A 554 ZN ZN A 801 1555 1555 2.09 LINK OD1 ASP A 554 MG MG A 802 1555 1555 2.07 LINK OD1 ASP A 664 ZN ZN A 801 1555 1555 1.98 LINK ZN ZN A 801 O HOH A 903 1555 1555 2.28 LINK ZN ZN A 801 O HOH A 939 1555 1555 2.23 LINK MG MG A 802 O HOH A 903 1555 1555 1.95 LINK MG MG A 802 O HOH A 904 1555 1555 1.97 LINK MG MG A 802 O HOH A 908 1555 1555 2.04 LINK MG MG A 802 O HOH A 932 1555 1555 2.01 LINK MG MG A 802 O HOH A 950 1555 1555 2.08 LINK NE2 HIS B 519 ZN ZN B 801 1555 1555 2.25 LINK NE2 HIS B 553 ZN ZN B 801 1555 1555 2.21 LINK OD2 ASP B 554 ZN ZN B 801 1555 1555 2.09 LINK OD1 ASP B 554 MG MG B 802 1555 1555 2.15 LINK OD1 ASP B 664 ZN ZN B 801 1555 1555 1.98 LINK ZN ZN B 801 O HOH B 918 1555 1555 2.12 LINK MG MG B 802 O HOH B 905 1555 1555 2.06 LINK MG MG B 802 O HOH B 906 1555 1555 2.16 LINK MG MG B 802 O HOH B 918 1555 1555 1.95 LINK MG MG B 802 O HOH B 928 1555 1555 2.09 LINK MG MG B 802 O HOH B 939 1555 1555 1.95 SITE 1 AC1 6 HIS A 519 HIS A 553 ASP A 554 ASP A 664 SITE 2 AC1 6 HOH A 903 HOH A 939 SITE 1 AC2 6 ASP A 554 HOH A 903 HOH A 904 HOH A 908 SITE 2 AC2 6 HOH A 932 HOH A 950 SITE 1 AC3 16 TYR A 514 HIS A 515 LEU A 625 ASP A 664 SITE 2 AC3 16 LEU A 665 SER A 667 VAL A 668 ILE A 682 SITE 3 AC3 16 PHE A 686 MET A 703 GLN A 716 PHE A 719 SITE 4 AC3 16 HOH A 901 HOH A 920 HOH A 936 GLY B 697 SITE 1 AC4 6 HIS B 519 HIS B 553 ASP B 554 ASP B 664 SITE 2 AC4 6 HOH B 918 HOH B 923 SITE 1 AC5 6 ASP B 554 HOH B 905 HOH B 906 HOH B 918 SITE 2 AC5 6 HOH B 928 HOH B 939 SITE 1 AC6 12 TYR B 514 HIS B 515 LEU B 665 SER B 667 SITE 2 AC6 12 VAL B 668 TYR B 683 PHE B 686 MET B 703 SITE 3 AC6 12 GLN B 716 PHE B 719 HOH B 912 HOH B 941 CRYST1 50.500 81.350 158.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006313 0.00000