HEADER DNA BINDING PROTEIN 16-JUN-15 5C32 TITLE CONSTITUTIVELY ACTIVE SIN RECOMBINASE CATALTYIC DOMAIN - I100T COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSPOSON TN552 DNA-INVERTASE BIN3; COMPND 3 CHAIN: B, D, A, C; COMPND 4 FRAGMENT: UNP RESIDUES 1-128; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: BIN3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE RECOMBINASE, SITE SPECIFIC RECOMBINASE, CONFORMATIONAL KEYWDS 2 FLEXIBILITY, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.S.TREJO,P.A.RICE REVDAT 4 11-DEC-19 5C32 1 REMARK REVDAT 3 17-JAN-18 5C32 1 JRNL REVDAT 2 06-SEP-17 5C32 1 REMARK REVDAT 1 21-DEC-16 5C32 0 JRNL AUTH C.S.TREJO,R.S.ROCK,W.M.STAR,M.R.BOOCOCK,P.A.RICE JRNL TITL SNAPSHOTS OF A MOLECULAR SWIVEL IN ACTION JRNL REF NUCLEIC ACIDS RES. 2018 JRNL REFN ESSN 1362-4962 JRNL DOI 10.1093/NAR/GKX1309 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 25212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2736 - 7.9819 0.99 1284 143 0.1772 0.2420 REMARK 3 2 7.9819 - 6.3435 1.00 1287 140 0.2490 0.3309 REMARK 3 3 6.3435 - 5.5440 1.00 1294 145 0.2795 0.3567 REMARK 3 4 5.5440 - 5.0381 1.00 1271 142 0.2482 0.2970 REMARK 3 5 5.0381 - 4.6776 1.00 1291 149 0.2403 0.2671 REMARK 3 6 4.6776 - 4.4022 1.00 1270 142 0.2681 0.3311 REMARK 3 7 4.4022 - 4.1819 1.00 1281 143 0.2784 0.3588 REMARK 3 8 4.1819 - 4.0001 1.00 1320 148 0.2850 0.3013 REMARK 3 9 4.0001 - 3.8462 1.00 1279 139 0.3122 0.3497 REMARK 3 10 3.8462 - 3.7136 1.00 1285 139 0.3145 0.3957 REMARK 3 11 3.7136 - 3.5975 1.00 1308 142 0.3370 0.3795 REMARK 3 12 3.5975 - 3.4948 1.00 1288 140 0.3369 0.3585 REMARK 3 13 3.4948 - 3.4028 1.00 1287 142 0.3670 0.4084 REMARK 3 14 3.4028 - 3.3198 1.00 1276 142 0.3647 0.3897 REMARK 3 15 3.3198 - 3.2444 1.00 1273 138 0.3751 0.4316 REMARK 3 16 3.2444 - 3.1754 1.00 1310 148 0.4188 0.3991 REMARK 3 17 3.1754 - 3.1119 0.98 1251 141 0.4123 0.4432 REMARK 3 18 3.1119 - 3.0532 0.66 843 91 0.4194 0.4190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.700 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 120.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 156.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4053 REMARK 3 ANGLE : 0.506 5435 REMARK 3 CHIRALITY : 0.026 622 REMARK 3 PLANARITY : 0.002 698 REMARK 3 DIHEDRAL : 10.070 1599 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 101) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8354 -47.7941 22.2264 REMARK 3 T TENSOR REMARK 3 T11: 1.6064 T22: 1.0851 REMARK 3 T33: 1.8015 T12: -0.3793 REMARK 3 T13: -0.0249 T23: 0.2273 REMARK 3 L TENSOR REMARK 3 L11: 7.7603 L22: 0.9530 REMARK 3 L33: 1.4893 L12: 1.8382 REMARK 3 L13: 0.2625 L23: 0.0807 REMARK 3 S TENSOR REMARK 3 S11: 1.1269 S12: -0.1276 S13: -0.8636 REMARK 3 S21: 1.4199 S22: -0.4061 S23: 1.4726 REMARK 3 S31: 0.5680 S32: -0.9663 S33: 0.0089 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2385 -43.3224 17.1876 REMARK 3 T TENSOR REMARK 3 T11: 1.3076 T22: 0.8221 REMARK 3 T33: 1.4054 T12: -0.4451 REMARK 3 T13: -0.0845 T23: 0.0632 REMARK 3 L TENSOR REMARK 3 L11: 2.7032 L22: 0.2250 REMARK 3 L33: 1.2481 L12: -0.1870 REMARK 3 L13: 0.1833 L23: -0.5455 REMARK 3 S TENSOR REMARK 3 S11: -0.2118 S12: 1.1359 S13: -0.2002 REMARK 3 S21: -1.2645 S22: 1.1817 S23: 2.5580 REMARK 3 S31: -1.1760 S32: 1.6181 S33: 0.1723 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 96) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3072 -57.0648 14.4819 REMARK 3 T TENSOR REMARK 3 T11: 1.2936 T22: 2.1759 REMARK 3 T33: 1.5328 T12: 0.3157 REMARK 3 T13: -0.1243 T23: -1.0854 REMARK 3 L TENSOR REMARK 3 L11: 1.6799 L22: 3.1628 REMARK 3 L33: 6.5266 L12: -0.7326 REMARK 3 L13: 0.6963 L23: 4.1556 REMARK 3 S TENSOR REMARK 3 S11: -0.5365 S12: 2.2548 S13: -0.8199 REMARK 3 S21: -0.0767 S22: 0.9945 S23: -0.4069 REMARK 3 S31: 1.0453 S32: 2.3220 S33: 0.0202 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 102 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4329 -46.6863 16.1507 REMARK 3 T TENSOR REMARK 3 T11: 1.3865 T22: 1.4667 REMARK 3 T33: 0.9604 T12: -0.1148 REMARK 3 T13: -0.1792 T23: -0.1098 REMARK 3 L TENSOR REMARK 3 L11: 2.3508 L22: 1.9490 REMARK 3 L33: 0.8738 L12: -2.2338 REMARK 3 L13: -1.5084 L23: 1.2453 REMARK 3 S TENSOR REMARK 3 S11: 0.1629 S12: 0.5684 S13: 0.0256 REMARK 3 S21: -0.3698 S22: 0.6955 S23: -0.3748 REMARK 3 S31: 0.0129 S32: -1.1790 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 94) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7683 -27.9455 -2.5576 REMARK 3 T TENSOR REMARK 3 T11: 0.8558 T22: 1.6882 REMARK 3 T33: 1.0047 T12: -0.0384 REMARK 3 T13: -0.1713 T23: 0.5065 REMARK 3 L TENSOR REMARK 3 L11: 6.7474 L22: 3.6381 REMARK 3 L33: 7.8443 L12: -4.0147 REMARK 3 L13: 0.1091 L23: -1.0995 REMARK 3 S TENSOR REMARK 3 S11: 0.6339 S12: 1.4595 S13: -0.1246 REMARK 3 S21: -0.1141 S22: -0.8486 S23: -0.0315 REMARK 3 S31: -0.4276 S32: 1.5402 S33: -0.0131 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6893 -36.3571 8.7508 REMARK 3 T TENSOR REMARK 3 T11: 1.1013 T22: 1.9897 REMARK 3 T33: 1.3872 T12: -0.2170 REMARK 3 T13: -1.1018 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 6.3656 L22: 3.0873 REMARK 3 L33: 2.1535 L12: 0.9730 REMARK 3 L13: -6.1872 L23: 0.7959 REMARK 3 S TENSOR REMARK 3 S11: 1.8897 S12: 0.4916 S13: -0.5012 REMARK 3 S21: -0.2260 S22: 0.6090 S23: 0.5655 REMARK 3 S31: -1.0795 S32: -0.2669 S33: 2.4406 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2925 -26.3361 28.8038 REMARK 3 T TENSOR REMARK 3 T11: 0.9420 T22: 0.7484 REMARK 3 T33: 1.0088 T12: -0.3261 REMARK 3 T13: -0.0100 T23: -0.0574 REMARK 3 L TENSOR REMARK 3 L11: 8.4480 L22: 8.9700 REMARK 3 L33: 9.3547 L12: -0.4970 REMARK 3 L13: -2.2929 L23: 2.9394 REMARK 3 S TENSOR REMARK 3 S11: -0.3575 S12: 0.6942 S13: 1.0851 REMARK 3 S21: 0.4488 S22: 0.5821 S23: 0.1006 REMARK 3 S31: -0.7470 S32: 0.7345 S33: -0.0062 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 102 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7348 -35.2294 20.1147 REMARK 3 T TENSOR REMARK 3 T11: 0.8791 T22: 1.4052 REMARK 3 T33: 1.0819 T12: -0.3466 REMARK 3 T13: -0.2465 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 4.3836 L22: 3.1511 REMARK 3 L33: 2.8542 L12: -2.3887 REMARK 3 L13: -0.3556 L23: 1.2104 REMARK 3 S TENSOR REMARK 3 S11: -0.6859 S12: 3.0682 S13: 0.3196 REMARK 3 S21: -1.0181 S22: 0.0637 S23: 0.3020 REMARK 3 S31: 0.8901 S32: -0.6440 S33: -0.0760 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000209387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47385 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 17.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.71500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM DTT, 50MM HEPES, PH7.0, 1.77M REMARK 280 AMSO4, 13% PEG400, 5% PROPYLENE GLYCOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.17600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.17600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.88700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.09700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.88700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.09700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.17600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.88700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.09700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.17600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.88700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.09700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 127 REMARK 465 SER B 128 REMARK 465 ASN D 97 REMARK 465 GLU D 98 REMARK 465 VAL D 99 REMARK 465 THR D 100 REMARK 465 GLY D 101 REMARK 465 SER D 128 REMARK 465 MSE A 95 REMARK 465 MSE A 96 REMARK 465 ASN A 97 REMARK 465 GLU A 98 REMARK 465 VAL A 99 REMARK 465 THR A 100 REMARK 465 GLY A 101 REMARK 465 ASN A 126 REMARK 465 GLU A 127 REMARK 465 SER A 128 REMARK 465 GLU C 127 REMARK 465 SER C 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 14 96.62 -65.56 REMARK 500 PHE B 25 44.26 -93.34 REMARK 500 GLU B 98 83.33 63.24 REMARK 500 GLU D 28 -68.80 -95.77 REMARK 500 GLU D 54 -104.55 -126.81 REMARK 500 MSE D 95 72.94 -110.42 REMARK 500 GLU A 28 -76.65 -71.50 REMARK 500 ASP A 57 -169.25 -74.47 REMARK 500 MSE C 55 109.05 -50.42 REMARK 500 VAL C 99 124.20 -27.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PKZ RELATED DB: PDB REMARK 900 THE CATALYTIC DOMAIN OF A DIFFERENT MUTANT OF SAME PROTEIN REMARK 900 RELATED ID: 2R0Q RELATED DB: PDB REMARK 900 A FULLL-LENGTH REGULATORY TETRAMER OF THE SAME PROTEIN REMARK 900 RELATED ID: 5C31 RELATED DB: PDB REMARK 900 RELATED ID: 5C34 RELATED DB: PDB REMARK 900 RELATED ID: 5C35 RELATED DB: PDB DBREF 5C32 B 1 128 UNP P20384 BIN3_STAAU 1 128 DBREF 5C32 D 1 128 UNP P20384 BIN3_STAAU 1 128 DBREF 5C32 A 1 128 UNP P20384 BIN3_STAAU 1 128 DBREF 5C32 C 1 128 UNP P20384 BIN3_STAAU 1 128 SEQADV 5C32 GLU B 54 UNP P20384 ARG 54 ENGINEERED MUTATION SEQADV 5C32 THR B 100 UNP P20384 ILE 100 ENGINEERED MUTATION SEQADV 5C32 GLU D 54 UNP P20384 ARG 54 ENGINEERED MUTATION SEQADV 5C32 THR D 100 UNP P20384 ILE 100 ENGINEERED MUTATION SEQADV 5C32 GLU A 54 UNP P20384 ARG 54 ENGINEERED MUTATION SEQADV 5C32 THR A 100 UNP P20384 ILE 100 ENGINEERED MUTATION SEQADV 5C32 GLU C 54 UNP P20384 ARG 54 ENGINEERED MUTATION SEQADV 5C32 THR C 100 UNP P20384 ILE 100 ENGINEERED MUTATION SEQRES 1 B 128 MSE ILE ILE GLY TYR ALA ARG VAL SER SER LEU ASP GLN SEQRES 2 B 128 ASN LEU GLU ARG GLN LEU GLU ASN LEU LYS THR PHE GLY SEQRES 3 B 128 ALA GLU LYS ILE PHE THR GLU LYS GLN SER GLY LYS SER SEQRES 4 B 128 ILE GLU ASN ARG PRO ILE LEU GLN LYS ALA LEU ASN PHE SEQRES 5 B 128 VAL GLU MSE GLY ASP ARG PHE ILE VAL GLU SER ILE ASP SEQRES 6 B 128 ARG LEU GLY ARG ASN TYR ASN GLU VAL ILE HIS THR VAL SEQRES 7 B 128 ASN TYR LEU LYS ASP LYS GLU VAL GLN LEU MSE ILE THR SEQRES 8 B 128 SER LEU PRO MSE MSE ASN GLU VAL THR GLY ASN PRO LEU SEQRES 9 B 128 LEU ASP LYS PHE MSE LYS ASP LEU ILE ILE GLN ILE LEU SEQRES 10 B 128 ALA MSE VAL SER GLU GLN GLU ARG ASN GLU SER SEQRES 1 D 128 MSE ILE ILE GLY TYR ALA ARG VAL SER SER LEU ASP GLN SEQRES 2 D 128 ASN LEU GLU ARG GLN LEU GLU ASN LEU LYS THR PHE GLY SEQRES 3 D 128 ALA GLU LYS ILE PHE THR GLU LYS GLN SER GLY LYS SER SEQRES 4 D 128 ILE GLU ASN ARG PRO ILE LEU GLN LYS ALA LEU ASN PHE SEQRES 5 D 128 VAL GLU MSE GLY ASP ARG PHE ILE VAL GLU SER ILE ASP SEQRES 6 D 128 ARG LEU GLY ARG ASN TYR ASN GLU VAL ILE HIS THR VAL SEQRES 7 D 128 ASN TYR LEU LYS ASP LYS GLU VAL GLN LEU MSE ILE THR SEQRES 8 D 128 SER LEU PRO MSE MSE ASN GLU VAL THR GLY ASN PRO LEU SEQRES 9 D 128 LEU ASP LYS PHE MSE LYS ASP LEU ILE ILE GLN ILE LEU SEQRES 10 D 128 ALA MSE VAL SER GLU GLN GLU ARG ASN GLU SER SEQRES 1 A 128 MSE ILE ILE GLY TYR ALA ARG VAL SER SER LEU ASP GLN SEQRES 2 A 128 ASN LEU GLU ARG GLN LEU GLU ASN LEU LYS THR PHE GLY SEQRES 3 A 128 ALA GLU LYS ILE PHE THR GLU LYS GLN SER GLY LYS SER SEQRES 4 A 128 ILE GLU ASN ARG PRO ILE LEU GLN LYS ALA LEU ASN PHE SEQRES 5 A 128 VAL GLU MSE GLY ASP ARG PHE ILE VAL GLU SER ILE ASP SEQRES 6 A 128 ARG LEU GLY ARG ASN TYR ASN GLU VAL ILE HIS THR VAL SEQRES 7 A 128 ASN TYR LEU LYS ASP LYS GLU VAL GLN LEU MSE ILE THR SEQRES 8 A 128 SER LEU PRO MSE MSE ASN GLU VAL THR GLY ASN PRO LEU SEQRES 9 A 128 LEU ASP LYS PHE MSE LYS ASP LEU ILE ILE GLN ILE LEU SEQRES 10 A 128 ALA MSE VAL SER GLU GLN GLU ARG ASN GLU SER SEQRES 1 C 128 MSE ILE ILE GLY TYR ALA ARG VAL SER SER LEU ASP GLN SEQRES 2 C 128 ASN LEU GLU ARG GLN LEU GLU ASN LEU LYS THR PHE GLY SEQRES 3 C 128 ALA GLU LYS ILE PHE THR GLU LYS GLN SER GLY LYS SER SEQRES 4 C 128 ILE GLU ASN ARG PRO ILE LEU GLN LYS ALA LEU ASN PHE SEQRES 5 C 128 VAL GLU MSE GLY ASP ARG PHE ILE VAL GLU SER ILE ASP SEQRES 6 C 128 ARG LEU GLY ARG ASN TYR ASN GLU VAL ILE HIS THR VAL SEQRES 7 C 128 ASN TYR LEU LYS ASP LYS GLU VAL GLN LEU MSE ILE THR SEQRES 8 C 128 SER LEU PRO MSE MSE ASN GLU VAL THR GLY ASN PRO LEU SEQRES 9 C 128 LEU ASP LYS PHE MSE LYS ASP LEU ILE ILE GLN ILE LEU SEQRES 10 C 128 ALA MSE VAL SER GLU GLN GLU ARG ASN GLU SER MODRES 5C32 MSE B 1 MET MODIFIED RESIDUE MODRES 5C32 MSE B 55 MET MODIFIED RESIDUE MODRES 5C32 MSE B 89 MET MODIFIED RESIDUE MODRES 5C32 MSE B 95 MET MODIFIED RESIDUE MODRES 5C32 MSE B 96 MET MODIFIED RESIDUE MODRES 5C32 MSE B 109 MET MODIFIED RESIDUE MODRES 5C32 MSE B 119 MET MODIFIED RESIDUE MODRES 5C32 MSE D 1 MET MODIFIED RESIDUE MODRES 5C32 MSE D 55 MET MODIFIED RESIDUE MODRES 5C32 MSE D 89 MET MODIFIED RESIDUE MODRES 5C32 MSE D 109 MET MODIFIED RESIDUE MODRES 5C32 MSE D 119 MET MODIFIED RESIDUE MODRES 5C32 MSE A 1 MET MODIFIED RESIDUE MODRES 5C32 MSE A 55 MET MODIFIED RESIDUE MODRES 5C32 MSE A 89 MET MODIFIED RESIDUE MODRES 5C32 MSE A 109 MET MODIFIED RESIDUE MODRES 5C32 MSE A 119 MET MODIFIED RESIDUE MODRES 5C32 MSE C 1 MET MODIFIED RESIDUE MODRES 5C32 MSE C 55 MET MODIFIED RESIDUE MODRES 5C32 MSE C 89 MET MODIFIED RESIDUE MODRES 5C32 MSE C 109 MET MODIFIED RESIDUE MODRES 5C32 MSE C 119 MET MODIFIED RESIDUE HET MSE B 1 19 HET MSE B 55 17 HET MSE B 89 17 HET MSE B 95 17 HET MSE B 96 17 HET MSE B 109 17 HET MSE B 119 17 HET MSE D 1 19 HET MSE D 55 17 HET MSE D 89 17 HET MSE D 95 17 HET MSE D 96 17 HET MSE D 109 17 HET MSE D 119 17 HET MSE A 1 19 HET MSE A 55 17 HET MSE A 89 17 HET MSE A 109 17 HET MSE A 119 17 HET MSE C 1 19 HET MSE C 55 17 HET MSE C 89 17 HET MSE C 95 17 HET MSE C 96 17 HET MSE C 109 17 HET MSE C 119 17 HET SO4 B 201 5 HET SO4 D 201 5 HET SO4 A 201 5 HET SO4 C 201 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 26(C5 H11 N O2 SE) FORMUL 5 SO4 4(O4 S 2-) HELIX 1 AA1 ASN B 14 PHE B 25 1 12 HELIX 2 AA2 ARG B 43 VAL B 53 1 11 HELIX 3 AA3 SER B 63 LEU B 67 5 5 HELIX 4 AA4 ASN B 70 LYS B 84 1 15 HELIX 5 AA5 ASN B 102 ASN B 126 1 25 HELIX 6 AA6 ASN D 14 PHE D 25 1 12 HELIX 7 AA7 ARG D 43 ASN D 51 1 9 HELIX 8 AA8 SER D 63 GLY D 68 1 6 HELIX 9 AA9 ASN D 70 LYS D 84 1 15 HELIX 10 AB1 PRO D 103 GLU D 127 1 25 HELIX 11 AB2 LEU A 15 PHE A 25 1 11 HELIX 12 AB3 ARG A 43 VAL A 53 1 11 HELIX 13 AB4 SER A 63 GLY A 68 1 6 HELIX 14 AB5 ASN A 70 LYS A 84 1 15 HELIX 15 AB6 PRO A 103 ARG A 125 1 23 HELIX 16 AB7 ASN C 14 PHE C 25 1 12 HELIX 17 AB8 ARG C 43 VAL C 53 1 11 HELIX 18 AB9 SER C 63 GLY C 68 1 6 HELIX 19 AC1 ASN C 70 LYS C 84 1 15 HELIX 20 AC2 ASN C 102 ARG C 125 1 24 SHEET 1 AA1 4 LYS B 29 LYS B 34 0 SHEET 2 AA1 4 ILE B 2 VAL B 8 1 N VAL B 8 O GLU B 33 SHEET 3 AA1 4 ARG B 58 VAL B 61 1 O ARG B 58 N ILE B 3 SHEET 4 AA1 4 GLN B 87 ILE B 90 1 O GLN B 87 N PHE B 59 SHEET 1 AA2 4 LYS D 29 PHE D 31 0 SHEET 2 AA2 4 ILE D 2 TYR D 5 1 N GLY D 4 O PHE D 31 SHEET 3 AA2 4 ARG D 58 VAL D 61 1 O ARG D 58 N ILE D 3 SHEET 4 AA2 4 GLN D 87 ILE D 90 1 O MSE D 89 N PHE D 59 SHEET 1 AA3 4 LYS A 29 LYS A 34 0 SHEET 2 AA3 4 ILE A 2 VAL A 8 1 N GLY A 4 O LYS A 29 SHEET 3 AA3 4 ARG A 58 VAL A 61 1 O ARG A 58 N ILE A 3 SHEET 4 AA3 4 GLN A 87 ILE A 90 1 O GLN A 87 N PHE A 59 SHEET 1 AA4 4 LYS C 29 PHE C 31 0 SHEET 2 AA4 4 ILE C 2 TYR C 5 1 N GLY C 4 O PHE C 31 SHEET 3 AA4 4 ARG C 58 VAL C 61 1 O ILE C 60 N TYR C 5 SHEET 4 AA4 4 GLN C 87 ILE C 90 1 O MSE C 89 N PHE C 59 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C GLU B 54 N MSE B 55 1555 1555 1.33 LINK C MSE B 55 N GLY B 56 1555 1555 1.33 LINK C LEU B 88 N MSE B 89 1555 1555 1.33 LINK C MSE B 89 N ILE B 90 1555 1555 1.33 LINK C PRO B 94 N MSE B 95 1555 1555 1.33 LINK C MSE B 95 N MSE B 96 1555 1555 1.32 LINK C MSE B 96 N ASN B 97 1555 1555 1.33 LINK C PHE B 108 N MSE B 109 1555 1555 1.33 LINK C MSE B 109 N LYS B 110 1555 1555 1.33 LINK C ALA B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N VAL B 120 1555 1555 1.33 LINK C MSE D 1 N ILE D 2 1555 1555 1.33 LINK C GLU D 54 N MSE D 55 1555 1555 1.33 LINK C MSE D 55 N GLY D 56 1555 1555 1.33 LINK C LEU D 88 N MSE D 89 1555 1555 1.33 LINK C MSE D 89 N ILE D 90 1555 1555 1.33 LINK C PRO D 94 N MSE D 95 1555 1555 1.33 LINK C MSE D 95 N MSE D 96 1555 1555 1.33 LINK C PHE D 108 N MSE D 109 1555 1555 1.33 LINK C MSE D 109 N LYS D 110 1555 1555 1.33 LINK C ALA D 118 N MSE D 119 1555 1555 1.33 LINK C MSE D 119 N VAL D 120 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C GLU A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N GLY A 56 1555 1555 1.33 LINK C LEU A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ILE A 90 1555 1555 1.33 LINK C PHE A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N LYS A 110 1555 1555 1.33 LINK C ALA A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N VAL A 120 1555 1555 1.33 LINK C MSE C 1 N ILE C 2 1555 1555 1.33 LINK C GLU C 54 N MSE C 55 1555 1555 1.33 LINK C MSE C 55 N GLY C 56 1555 1555 1.33 LINK C LEU C 88 N MSE C 89 1555 1555 1.33 LINK C MSE C 89 N ILE C 90 1555 1555 1.33 LINK C PRO C 94 N MSE C 95 1555 1555 1.33 LINK C MSE C 95 N MSE C 96 1555 1555 1.33 LINK C MSE C 96 N ASN C 97 1555 1555 1.33 LINK C PHE C 108 N MSE C 109 1555 1555 1.33 LINK C MSE C 109 N LYS C 110 1555 1555 1.33 LINK C ALA C 118 N MSE C 119 1555 1555 1.33 LINK C MSE C 119 N VAL C 120 1555 1555 1.33 SITE 1 AC1 4 ARG B 7 SER B 9 GLN B 13 ARG B 69 SITE 1 AC2 5 ARG D 7 SER D 9 GLN D 13 ARG D 66 SITE 2 AC2 5 ARG D 69 SITE 1 AC3 5 ARG A 7 SER A 9 GLN A 13 ARG A 66 SITE 2 AC3 5 ARG A 69 SITE 1 AC4 6 ARG C 7 SER C 9 GLN C 13 GLY C 37 SITE 2 AC4 6 ARG C 66 ARG C 69 CRYST1 83.774 114.194 146.352 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011937 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006833 0.00000 HETATM 1 N MSE B 1 -29.490 -36.948 29.458 1.00213.39 N ANISOU 1 N MSE B 1 26486 23687 30903 -4524 7490 1297 N HETATM 2 CA MSE B 1 -29.744 -38.405 29.647 1.00215.15 C ANISOU 2 CA MSE B 1 26894 24017 30836 -4909 7118 1566 C HETATM 3 C MSE B 1 -28.521 -39.220 29.236 1.00211.30 C ANISOU 3 C MSE B 1 26873 23445 29965 -4864 6375 1766 C HETATM 4 O MSE B 1 -27.778 -38.827 28.336 1.00206.95 O ANISOU 4 O MSE B 1 26320 22787 29526 -4437 6021 1771 O HETATM 5 CB MSE B 1 -30.966 -38.845 28.837 1.00217.01 C ANISOU 5 CB MSE B 1 26571 24277 31605 -4799 7021 1749 C HETATM 6 CG MSE B 1 -31.404 -40.279 29.099 1.00220.94 C ANISOU 6 CG MSE B 1 27182 24856 31909 -5226 6730 1998 C HETATM 7 SE MSE B 1 -32.907 -40.832 27.985 1.00236.71 SE ANISOU 7 SE MSE B 1 28451 26900 34589 -5076 6572 2198 SE HETATM 8 CE MSE B 1 -33.172 -42.617 28.720 1.00223.13 C ANISOU 8 CE MSE B 1 27046 25224 32509 -5742 6265 2474 C HETATM 9 H1 MSE B 1 -30.184 -36.578 29.041 1.00256.06 H HETATM 10 H2 MSE B 1 -29.380 -36.561 30.252 1.00256.06 H HETATM 11 H3 MSE B 1 -28.755 -36.835 28.969 1.00256.06 H HETATM 12 HA MSE B 1 -29.932 -38.572 30.583 1.00258.18 H HETATM 13 HB2 MSE B 1 -31.711 -38.264 29.056 1.00260.41 H HETATM 14 HB3 MSE B 1 -30.757 -38.768 27.892 1.00260.41 H HETATM 15 HG2 MSE B 1 -30.661 -40.874 28.915 1.00265.13 H HETATM 16 HG3 MSE B 1 -31.673 -40.362 30.027 1.00265.13 H HETATM 17 HE1 MSE B 1 -33.911 -43.042 28.257 1.00267.75 H HETATM 18 HE2 MSE B 1 -32.361 -43.134 28.593 1.00267.75 H HETATM 19 HE3 MSE B 1 -33.373 -42.542 29.666 1.00267.75 H