HEADER LIGASE 19-JUN-15 5C5H TITLE R195K E. COLI MENE WITH BOUND OSB-AMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-SUCCINYLBENZOATE--COA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: O-SUCCINYLBENZOYL-COA SYNTHETASE,OSB-COA SYNTHETASE; COMPND 5 EC: 6.2.1.26; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MENE, B2260, JW2255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.MATARLO,R.SHEK,K.R.RAJASHANKAR,P.J.TONGE,J.B.FRENCH REVDAT 5 27-SEP-23 5C5H 1 LINK REVDAT 4 25-DEC-19 5C5H 1 REMARK REVDAT 3 06-SEP-17 5C5H 1 JRNL REMARK REVDAT 2 04-NOV-15 5C5H 1 JRNL REVDAT 1 07-OCT-15 5C5H 0 JRNL AUTH J.S.MATARLO,C.E.EVANS,I.SHARMA,L.J.LAVAUD,S.C.NGO,R.SHEK, JRNL AUTH 2 K.R.RAJASHANKAR,J.B.FRENCH,D.S.TAN,P.J.TONGE JRNL TITL MECHANISM OF MENE INHIBITION BY ACYL-ADENYLATE ANALOGUES AND JRNL TITL 2 DISCOVERY OF NOVEL ANTIBACTERIAL AGENTS. JRNL REF BIOCHEMISTRY V. 54 6514 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26394156 JRNL DOI 10.1021/ACS.BIOCHEM.5B00966 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2015 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2700 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6854 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.427 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.965 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7125 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6742 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9740 ; 1.163 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15405 ; 0.745 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 888 ; 6.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;34.631 ;23.700 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1094 ;14.576 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;17.462 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1097 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8092 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1665 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3561 ; 1.537 ; 3.920 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3560 ; 1.537 ; 3.919 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4440 ; 2.580 ; 5.867 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4441 ; 2.579 ; 5.868 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3564 ; 1.445 ; 3.989 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3565 ; 1.445 ; 3.989 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5299 ; 2.473 ; 5.924 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7814 ; 4.323 ;30.277 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7815 ; 4.323 ;30.276 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5C5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38130 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.92400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3IPL AND 1T5D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-22% PEG 4,000 0.2 M MGCL2 0.1 M REMARK 280 TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.25067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.50133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.50133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.25067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 660 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 144 REMARK 465 GLU A 389 REMARK 465 GLU A 430 REMARK 465 LEU A 431 REMARK 465 LYS A 432 REMARK 465 ASN A 433 REMARK 465 GLY A 434 REMARK 465 GLY A 435 REMARK 465 ILE A 436 REMARK 465 GLN A 451 REMARK 465 SER B -1 REMARK 465 SER B 145 REMARK 465 THR B 146 REMARK 465 ASN B 433 REMARK 465 GLY B 434 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 SER A 117 OG REMARK 470 SER A 145 OG REMARK 470 THR A 146 OG1 CG2 REMARK 470 SER A 237 OG REMARK 470 SER A 239 OG REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 ASP A 328 CG OD1 OD2 REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 PHE A 390 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 401 CG OD1 OD2 REMARK 470 HIS A 402 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 403 CG CD OE1 OE2 REMARK 470 SER A 404 OG REMARK 470 ARG A 417 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 422 CG1 CG2 REMARK 470 ARG A 423 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 444 CG CD CE NZ REMARK 470 GLN A 448 CG CD OE1 NE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 4 OG REMARK 470 GLU B 109 CD OE1 OE2 REMARK 470 ARG B 235 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 259 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 260 CG CD OE1 OE2 REMARK 470 ARG B 318 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 328 CG OD1 OD2 REMARK 470 LYS B 344 CD CE NZ REMARK 470 LYS B 388 CG CD CE NZ REMARK 470 ARG B 393 CZ NH1 NH2 REMARK 470 ASP B 401 CG OD1 OD2 REMARK 470 HIS B 402 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 403 CG CD OE1 OE2 REMARK 470 SER B 404 OG REMARK 470 ARG B 417 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 432 CG CD CE NZ REMARK 470 ILE B 436 CG1 CG2 CD1 REMARK 470 GLN B 448 CG CD OE1 NE2 REMARK 470 GLN B 451 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 253 O HOH A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 62.59 -164.10 REMARK 500 ASN A 24 -115.92 54.32 REMARK 500 ALA A 126 38.90 -163.08 REMARK 500 ALA A 201 -130.31 -94.57 REMARK 500 SER A 239 71.43 -106.59 REMARK 500 SER A 276 -132.43 110.91 REMARK 500 ASP A 284 18.21 -144.79 REMARK 500 ASN A 319 56.73 32.90 REMARK 500 LEU A 378 -54.05 -123.97 REMARK 500 HIS A 402 91.66 -160.30 REMARK 500 GLU A 403 146.16 82.52 REMARK 500 LYS A 414 -32.17 -141.29 REMARK 500 ARG B 15 43.81 -140.68 REMARK 500 ASN B 24 -106.84 61.81 REMARK 500 ALA B 201 -138.69 -98.92 REMARK 500 SER B 276 -127.34 105.63 REMARK 500 ASP B 284 21.18 -143.75 REMARK 500 GLU B 389 -44.65 175.92 REMARK 500 HIS B 402 -77.82 -127.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 O REMARK 620 2 ASP A 38 OD1 72.0 REMARK 620 3 GLN A 74 OE1 126.7 81.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 602 O REMARK 620 2 GLY B 48 O 149.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4YB A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4YB B 503 DBREF 5C5H A 1 451 UNP P37353 MENE_ECOLI 1 451 DBREF 5C5H B 1 451 UNP P37353 MENE_ECOLI 1 451 SEQADV 5C5H SER A -1 UNP P37353 EXPRESSION TAG SEQADV 5C5H HIS A 0 UNP P37353 EXPRESSION TAG SEQADV 5C5H LYS A 195 UNP P37353 ARG 195 ENGINEERED MUTATION SEQADV 5C5H SER B -1 UNP P37353 EXPRESSION TAG SEQADV 5C5H HIS B 0 UNP P37353 EXPRESSION TAG SEQADV 5C5H LYS B 195 UNP P37353 ARG 195 ENGINEERED MUTATION SEQRES 1 A 453 SER HIS MET ILE PHE SER ASP TRP PRO TRP ARG HIS TRP SEQRES 2 A 453 ARG GLN VAL ARG GLY GLU THR ILE ALA LEU ARG LEU ASN SEQRES 3 A 453 ASP GLU GLN LEU ASN TRP ARG GLU LEU CYS ALA ARG VAL SEQRES 4 A 453 ASP GLU LEU ALA SER GLY PHE ALA VAL GLN GLY VAL VAL SEQRES 5 A 453 GLU GLY SER GLY VAL MET LEU ARG ALA TRP ASN THR PRO SEQRES 6 A 453 GLN THR LEU LEU ALA TRP LEU ALA LEU LEU GLN CYS GLY SEQRES 7 A 453 ALA ARG VAL LEU PRO VAL ASN PRO GLN LEU PRO GLN PRO SEQRES 8 A 453 LEU LEU GLU GLU LEU LEU PRO ASN LEU THR LEU GLN PHE SEQRES 9 A 453 ALA LEU VAL PRO ASP GLY GLU ASN THR PHE PRO ALA LEU SEQRES 10 A 453 THR SER LEU HIS ILE GLN LEU VAL GLU GLY ALA HIS ALA SEQRES 11 A 453 ALA THR TRP GLN PRO THR ARG LEU CYS SER MET THR LEU SEQRES 12 A 453 THR SER GLY SER THR GLY LEU PRO LYS ALA ALA VAL HIS SEQRES 13 A 453 THR TYR GLN ALA HIS LEU ALA SER ALA GLN GLY VAL LEU SEQRES 14 A 453 SER LEU ILE PRO PHE GLY ASP HIS ASP ASP TRP LEU LEU SEQRES 15 A 453 SER LEU PRO LEU PHE HIS VAL SER GLY GLN GLY ILE MET SEQRES 16 A 453 TRP LYS TRP LEU TYR ALA GLY ALA ARG MET THR VAL ARG SEQRES 17 A 453 ASP LYS GLN PRO LEU GLU GLN MET LEU ALA GLY CYS THR SEQRES 18 A 453 HIS ALA SER LEU VAL PRO THR GLN LEU TRP ARG LEU LEU SEQRES 19 A 453 VAL ASN ARG SER SER VAL SER LEU LYS ALA VAL LEU LEU SEQRES 20 A 453 GLY GLY ALA ALA ILE PRO VAL GLU LEU THR GLU GLN ALA SEQRES 21 A 453 ARG GLU GLN GLY ILE ARG CYS PHE CYS GLY TYR GLY LEU SEQRES 22 A 453 THR GLU PHE ALA SER THR VAL CYS ALA LYS GLU ALA ASP SEQRES 23 A 453 GLY LEU ALA ASP VAL GLY SER PRO LEU PRO GLY ARG GLU SEQRES 24 A 453 VAL LYS ILE VAL ASN ASN GLU VAL TRP LEU ARG ALA ALA SEQRES 25 A 453 SER MET ALA GLU GLY TYR TRP ARG ASN GLY GLN LEU VAL SEQRES 26 A 453 SER LEU VAL ASN ASP GLU GLY TRP TYR ALA THR ARG ASP SEQRES 27 A 453 ARG GLY GLU MET HIS ASN GLY LYS LEU THR ILE VAL GLY SEQRES 28 A 453 ARG LEU ASP ASN LEU PHE PHE SER GLY GLY GLU GLY ILE SEQRES 29 A 453 GLN PRO GLU GLU VAL GLU ARG VAL ILE ALA ALA HIS PRO SEQRES 30 A 453 ALA VAL LEU GLN VAL PHE ILE VAL PRO VAL ALA ASP LYS SEQRES 31 A 453 GLU PHE GLY HIS ARG PRO VAL ALA VAL MET GLU TYR ASP SEQRES 32 A 453 HIS GLU SER VAL ASP LEU SER GLU TRP VAL LYS ASP LYS SEQRES 33 A 453 LEU ALA ARG PHE GLN GLN PRO VAL ARG TRP LEU THR LEU SEQRES 34 A 453 PRO PRO GLU LEU LYS ASN GLY GLY ILE LYS ILE SER ARG SEQRES 35 A 453 GLN ALA LEU LYS GLU TRP VAL GLN ARG GLN GLN SEQRES 1 B 453 SER HIS MET ILE PHE SER ASP TRP PRO TRP ARG HIS TRP SEQRES 2 B 453 ARG GLN VAL ARG GLY GLU THR ILE ALA LEU ARG LEU ASN SEQRES 3 B 453 ASP GLU GLN LEU ASN TRP ARG GLU LEU CYS ALA ARG VAL SEQRES 4 B 453 ASP GLU LEU ALA SER GLY PHE ALA VAL GLN GLY VAL VAL SEQRES 5 B 453 GLU GLY SER GLY VAL MET LEU ARG ALA TRP ASN THR PRO SEQRES 6 B 453 GLN THR LEU LEU ALA TRP LEU ALA LEU LEU GLN CYS GLY SEQRES 7 B 453 ALA ARG VAL LEU PRO VAL ASN PRO GLN LEU PRO GLN PRO SEQRES 8 B 453 LEU LEU GLU GLU LEU LEU PRO ASN LEU THR LEU GLN PHE SEQRES 9 B 453 ALA LEU VAL PRO ASP GLY GLU ASN THR PHE PRO ALA LEU SEQRES 10 B 453 THR SER LEU HIS ILE GLN LEU VAL GLU GLY ALA HIS ALA SEQRES 11 B 453 ALA THR TRP GLN PRO THR ARG LEU CYS SER MET THR LEU SEQRES 12 B 453 THR SER GLY SER THR GLY LEU PRO LYS ALA ALA VAL HIS SEQRES 13 B 453 THR TYR GLN ALA HIS LEU ALA SER ALA GLN GLY VAL LEU SEQRES 14 B 453 SER LEU ILE PRO PHE GLY ASP HIS ASP ASP TRP LEU LEU SEQRES 15 B 453 SER LEU PRO LEU PHE HIS VAL SER GLY GLN GLY ILE MET SEQRES 16 B 453 TRP LYS TRP LEU TYR ALA GLY ALA ARG MET THR VAL ARG SEQRES 17 B 453 ASP LYS GLN PRO LEU GLU GLN MET LEU ALA GLY CYS THR SEQRES 18 B 453 HIS ALA SER LEU VAL PRO THR GLN LEU TRP ARG LEU LEU SEQRES 19 B 453 VAL ASN ARG SER SER VAL SER LEU LYS ALA VAL LEU LEU SEQRES 20 B 453 GLY GLY ALA ALA ILE PRO VAL GLU LEU THR GLU GLN ALA SEQRES 21 B 453 ARG GLU GLN GLY ILE ARG CYS PHE CYS GLY TYR GLY LEU SEQRES 22 B 453 THR GLU PHE ALA SER THR VAL CYS ALA LYS GLU ALA ASP SEQRES 23 B 453 GLY LEU ALA ASP VAL GLY SER PRO LEU PRO GLY ARG GLU SEQRES 24 B 453 VAL LYS ILE VAL ASN ASN GLU VAL TRP LEU ARG ALA ALA SEQRES 25 B 453 SER MET ALA GLU GLY TYR TRP ARG ASN GLY GLN LEU VAL SEQRES 26 B 453 SER LEU VAL ASN ASP GLU GLY TRP TYR ALA THR ARG ASP SEQRES 27 B 453 ARG GLY GLU MET HIS ASN GLY LYS LEU THR ILE VAL GLY SEQRES 28 B 453 ARG LEU ASP ASN LEU PHE PHE SER GLY GLY GLU GLY ILE SEQRES 29 B 453 GLN PRO GLU GLU VAL GLU ARG VAL ILE ALA ALA HIS PRO SEQRES 30 B 453 ALA VAL LEU GLN VAL PHE ILE VAL PRO VAL ALA ASP LYS SEQRES 31 B 453 GLU PHE GLY HIS ARG PRO VAL ALA VAL MET GLU TYR ASP SEQRES 32 B 453 HIS GLU SER VAL ASP LEU SER GLU TRP VAL LYS ASP LYS SEQRES 33 B 453 LEU ALA ARG PHE GLN GLN PRO VAL ARG TRP LEU THR LEU SEQRES 34 B 453 PRO PRO GLU LEU LYS ASN GLY GLY ILE LYS ILE SER ARG SEQRES 35 B 453 GLN ALA LEU LYS GLU TRP VAL GLN ARG GLN GLN HET MG A 501 1 HET 4YB A 502 38 HET MG B 501 1 HET MG B 502 1 HET 4YB B 503 38 HETNAM MG MAGNESIUM ION HETNAM 4YB 5'-O-{[4-(2-CARBOXYPHENYL)-4- HETNAM 2 4YB OXOBUTANOYL]SULFAMOYL}ADENOSINE FORMUL 3 MG 3(MG 2+) FORMUL 4 4YB 2(C21 H22 N6 O10 S) FORMUL 8 HOH *223(H2 O) HELIX 1 AA1 TRP A 6 GLY A 16 1 11 HELIX 2 AA2 TRP A 30 GLN A 47 1 18 HELIX 3 AA3 THR A 62 CYS A 75 1 14 HELIX 4 AA4 PRO A 87 LEU A 95 1 9 HELIX 5 AA5 PRO A 96 LEU A 98 5 3 HELIX 6 AA6 TYR A 156 SER A 168 1 13 HELIX 7 AA7 HIS A 186 GLY A 200 1 15 HELIX 8 AA8 PRO A 210 LEU A 215 1 6 HELIX 9 AA9 VAL A 224 ARG A 235 1 12 HELIX 10 AB1 PRO A 251 GLN A 261 1 11 HELIX 11 AB2 THR A 272 ALA A 275 5 4 HELIX 12 AB3 ASP A 352 LEU A 354 5 3 HELIX 13 AB4 GLN A 363 ALA A 372 1 10 HELIX 14 AB5 GLU A 409 LYS A 414 5 6 HELIX 15 AB6 ALA A 416 GLN A 420 5 5 HELIX 16 AB7 SER A 439 ARG A 449 1 11 HELIX 17 AB8 TRP B 6 GLY B 16 1 11 HELIX 18 AB9 TRP B 30 GLN B 47 1 18 HELIX 19 AC1 THR B 62 CYS B 75 1 14 HELIX 20 AC2 PRO B 87 LEU B 95 1 9 HELIX 21 AC3 PRO B 96 THR B 99 5 4 HELIX 22 AC4 TYR B 156 SER B 168 1 13 HELIX 23 AC5 HIS B 186 GLY B 200 1 15 HELIX 24 AC6 PRO B 210 LEU B 215 1 6 HELIX 25 AC7 VAL B 224 ASN B 234 1 11 HELIX 26 AC8 PRO B 251 GLN B 261 1 11 HELIX 27 AC9 THR B 272 ALA B 275 5 4 HELIX 28 AD1 ASP B 352 LEU B 354 5 3 HELIX 29 AD2 GLN B 363 ALA B 373 1 11 HELIX 30 AD3 GLU B 409 LYS B 414 5 6 HELIX 31 AD4 ALA B 416 GLN B 420 5 5 HELIX 32 AD5 SER B 439 GLN B 450 1 12 SHEET 1 AA1 9 GLU A 26 ASN A 29 0 SHEET 2 AA1 9 ILE A 19 LEU A 23 -1 N LEU A 23 O GLU A 26 SHEET 3 AA1 9 ARG A 202 VAL A 205 1 O VAL A 205 N ARG A 22 SHEET 4 AA1 9 ASP A 177 LEU A 179 1 N TRP A 178 O ARG A 202 SHEET 5 AA1 9 HIS A 220 LEU A 223 1 O HIS A 220 N LEU A 179 SHEET 6 AA1 9 ALA A 242 LEU A 245 1 O LEU A 244 N ALA A 221 SHEET 7 AA1 9 CYS A 265 LEU A 271 1 O PHE A 266 N LEU A 245 SHEET 8 AA1 9 SER A 276 GLU A 282 -1 O VAL A 278 N TYR A 269 SHEET 9 AA1 9 SER A 291 PRO A 292 -1 O SER A 291 N ALA A 280 SHEET 1 AA2 4 ARG A 78 VAL A 82 0 SHEET 2 AA2 4 GLY A 54 ARG A 58 1 N VAL A 55 O LEU A 80 SHEET 3 AA2 4 PHE A 102 LEU A 104 1 O LEU A 104 N MET A 56 SHEET 4 AA2 4 THR A 116 LEU A 118 1 O LEU A 118 N ALA A 103 SHEET 1 AA3 4 LEU A 136 LEU A 141 0 SHEET 2 AA3 4 ALA A 151 THR A 155 -1 O HIS A 154 N CYS A 137 SHEET 3 AA3 4 GLY A 315 ARG A 318 -1 O GLY A 315 N VAL A 153 SHEET 4 AA3 4 GLN A 321 VAL A 323 -1 O VAL A 323 N TYR A 316 SHEET 1 AA4 4 ARG A 296 VAL A 301 0 SHEET 2 AA4 4 GLU A 304 ALA A 309 -1 O TRP A 306 N LYS A 299 SHEET 3 AA4 4 TYR A 332 HIS A 341 -1 O TYR A 332 N LEU A 307 SHEET 4 AA4 4 LYS A 344 ARG A 350 -1 O GLY A 349 N ARG A 337 SHEET 1 AA5 2 PHE A 355 SER A 357 0 SHEET 2 AA5 2 GLU A 360 ILE A 362 -1 O ILE A 362 N PHE A 355 SHEET 1 AA6 3 VAL A 377 ASP A 387 0 SHEET 2 AA6 3 GLY A 391 TYR A 400 -1 O VAL A 397 N PHE A 381 SHEET 3 AA6 3 TRP A 424 THR A 426 1 O LEU A 425 N ALA A 396 SHEET 1 AA7 4 GLU B 26 ASN B 29 0 SHEET 2 AA7 4 ILE B 19 LEU B 23 -1 N ALA B 20 O LEU B 28 SHEET 3 AA7 4 ARG B 202 VAL B 205 1 O VAL B 205 N ARG B 22 SHEET 4 AA7 4 ASP B 177 LEU B 179 1 N TRP B 178 O THR B 204 SHEET 1 AA8 4 ARG B 78 VAL B 82 0 SHEET 2 AA8 4 GLY B 54 ARG B 58 1 N VAL B 55 O LEU B 80 SHEET 3 AA8 4 PHE B 102 LEU B 104 1 O LEU B 104 N MET B 56 SHEET 4 AA8 4 THR B 116 LEU B 118 1 O LEU B 118 N ALA B 103 SHEET 1 AA9 4 LEU B 136 LEU B 141 0 SHEET 2 AA9 4 ALA B 151 THR B 155 -1 O HIS B 154 N CYS B 137 SHEET 3 AA9 4 GLY B 315 ARG B 318 -1 O GLY B 315 N VAL B 153 SHEET 4 AA9 4 GLN B 321 VAL B 323 -1 O VAL B 323 N TYR B 316 SHEET 1 AB1 5 HIS B 220 LEU B 223 0 SHEET 2 AB1 5 ALA B 242 LEU B 245 1 O LEU B 244 N ALA B 221 SHEET 3 AB1 5 CYS B 265 LEU B 271 1 O PHE B 266 N LEU B 245 SHEET 4 AB1 5 SER B 276 GLU B 282 -1 O CYS B 279 N TYR B 269 SHEET 5 AB1 5 SER B 291 PRO B 292 -1 O SER B 291 N ALA B 280 SHEET 1 AB2 4 ARG B 296 VAL B 301 0 SHEET 2 AB2 4 GLU B 304 ALA B 309 -1 O ARG B 308 N GLU B 297 SHEET 3 AB2 4 TYR B 332 HIS B 341 -1 O TYR B 332 N LEU B 307 SHEET 4 AB2 4 LYS B 344 ARG B 350 -1 O GLY B 349 N ARG B 337 SHEET 1 AB3 2 PHE B 355 SER B 357 0 SHEET 2 AB3 2 GLU B 360 ILE B 362 -1 O ILE B 362 N PHE B 355 SHEET 1 AB4 3 VAL B 377 ASP B 387 0 SHEET 2 AB4 3 GLY B 391 TYR B 400 -1 O VAL B 395 N VAL B 383 SHEET 3 AB4 3 TRP B 424 THR B 426 1 O LEU B 425 N ALA B 396 LINK O CYS A 34 MG MG A 501 1555 1555 2.97 LINK OD1 ASP A 38 MG MG A 501 1555 1555 2.81 LINK OE1 GLN A 74 MG MG A 501 1555 1555 2.86 LINK O HOH A 602 MG MG B 501 1555 1555 1.84 LINK O GLY B 48 MG MG B 501 1555 6664 2.55 LINK MG MG B 502 O HOH B 721 1555 1555 2.93 CISPEP 1 GLU A 124 GLY A 125 0 2.50 CISPEP 2 GLU B 124 GLY B 125 0 11.16 CISPEP 3 ASP B 174 HIS B 175 0 -23.30 SITE 1 AC1 4 ARG A 9 CYS A 34 ASP A 38 GLN A 74 SITE 1 AC2 25 SER A 188 LEU A 223 LEU A 244 LEU A 245 SITE 2 AC2 25 GLY A 246 GLY A 247 ALA A 248 ALA A 249 SITE 3 AC2 25 GLY A 268 TYR A 269 GLY A 270 LEU A 271 SITE 4 AC2 25 THR A 272 SER A 276 THR A 277 ASP A 336 SITE 5 AC2 25 ILE A 347 ARG A 350 LYS A 437 HOH A 605 SITE 6 AC2 25 HOH A 614 HOH A 623 HOH A 661 HOH A 666 SITE 7 AC2 25 HOH A 677 SITE 1 AC3 5 GLN A 132 PRO A 133 THR A 134 HOH A 602 SITE 2 AC3 5 GLY B 48 SITE 1 AC4 3 ASN B 61 PRO B 183 HOH B 721 SITE 1 AC5 26 LEU B 182 HIS B 186 SER B 188 LEU B 223 SITE 2 AC5 26 LEU B 244 LEU B 245 GLY B 246 GLY B 247 SITE 3 AC5 26 ALA B 248 ALA B 249 GLY B 268 TYR B 269 SITE 4 AC5 26 GLY B 270 LEU B 271 THR B 272 SER B 276 SITE 5 AC5 26 THR B 277 VAL B 289 ASP B 336 ARG B 350 SITE 6 AC5 26 LYS B 437 HOH B 606 HOH B 630 HOH B 654 SITE 7 AC5 26 HOH B 663 HOH B 672 CRYST1 126.060 126.060 111.752 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007933 0.004580 0.000000 0.00000 SCALE2 0.000000 0.009160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008948 0.00000