HEADER HYRDOLASE/HYDROLASE INHIBITOR 22-JUN-15 5C67 TITLE HUMAN MESOTRYPSIN IN COMPLEX WITH AMYLOID PRECURSOR PROTEIN INHIBITOR TITLE 2 VARIANT APPI-M17G/I18F/F34V COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPSIN-3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BRAIN TRYPSINOGEN,MESOTRYPSINOGEN,SERINE PROTEASE 3,SERINE COMPND 5 PROTEASE 4,TRYPSIN III,TRYPSIN IV; COMPND 6 EC: 3.4.21.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 11 CHAIN: E, C; COMPND 12 SYNONYM: ABPP,APPI,APP,ALZHEIMER DISEASE AMYLOID PROTEIN,AMYLOID COMPND 13 PRECURSOR PROTEIN,BETA-AMYLOID PRECURSOR PROTEIN,CEREBRAL VASCULAR COMPND 14 AMYLOID PEPTIDE,CVAP,PREA4,PROTEASE NEXIN-II,PN-II; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PANCREAS; SOURCE 6 GENE: PRSS3, PRSS4, TRY3, TRY4; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTRAP-T7-WTHU3; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: APP, A4, AD1; SOURCE 17 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS GS115; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 644223; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA-APPI KEYWDS APPI, KUNITZ DOMAIN, TRYPSIN, HYRDOLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.KAYODE,B.SANKARAN,E.S.RADISKY REVDAT 7 23-OCT-24 5C67 1 REMARK REVDAT 6 27-SEP-23 5C67 1 REMARK REVDAT 5 04-DEC-19 5C67 1 REMARK REVDAT 4 06-SEP-17 5C67 1 JRNL REMARK REVDAT 3 01-JUN-16 5C67 1 JRNL REVDAT 2 18-MAY-16 5C67 1 SOURCE DBREF SEQADV REVDAT 1 04-MAY-16 5C67 0 JRNL AUTH I.COHEN,O.KAYODE,A.HOCKLA,B.SANKARAN,D.C.RADISKY, JRNL AUTH 2 E.S.RADISKY,N.PAPO JRNL TITL COMBINATORIAL PROTEIN ENGINEERING OF PROTEOLYTICALLY JRNL TITL 2 RESISTANT MESOTRYPSIN INHIBITORS AS CANDIDATES FOR CANCER JRNL TITL 3 THERAPY. JRNL REF BIOCHEM.J. V. 473 1329 2016 JRNL REFN ESSN 1470-8728 JRNL PMID 26957636 JRNL DOI 10.1042/BJ20151410 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 66627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.400 REMARK 3 FREE R VALUE TEST SET COUNT : 974 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4846 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4193 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.415 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4316 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3956 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5874 ; 2.008 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9075 ; 0.926 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 553 ; 7.509 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;35.592 ;24.628 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 662 ;14.192 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.441 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5014 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1003 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5C67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66627 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 34.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 20.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.79600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3L33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM SULFATE, 0.1 M TRIS PH REMARK 280 7.5, AND 20% PEG-1000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.86500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.07500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.93250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.07500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 182.79750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.07500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.07500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.93250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.07500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.07500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 182.79750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 121.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR E -9 REMARK 465 VAL E -8 REMARK 465 ASP E -7 REMARK 465 TYR E -6 REMARK 465 LYS E -5 REMARK 465 ASP E -4 REMARK 465 ASP E -3 REMARK 465 ASP E -2 REMARK 465 ASP E -1 REMARK 465 LYS E 0 REMARK 465 GLU E 1 REMARK 465 PHE E 2 REMARK 465 SER E 57 REMARK 465 ALA E 58 REMARK 465 ILE E 59 REMARK 465 PRO E 60 REMARK 465 ARG E 61 REMARK 465 HIS E 62 REMARK 465 HIS E 63 REMARK 465 HIS E 64 REMARK 465 HIS E 65 REMARK 465 HIS E 66 REMARK 465 HIS E 67 REMARK 465 ALA E 68 REMARK 465 ALA E 69 REMARK 465 ALA E 70 REMARK 465 ASN E 71 REMARK 465 TYR C -9 REMARK 465 VAL C -8 REMARK 465 ASP C -7 REMARK 465 TYR C -6 REMARK 465 LYS C -5 REMARK 465 ASP C -4 REMARK 465 ASP C -3 REMARK 465 ASP C -2 REMARK 465 ASP C -1 REMARK 465 LYS C 0 REMARK 465 GLU C 1 REMARK 465 PHE C 2 REMARK 465 GLY C 56 REMARK 465 SER C 57 REMARK 465 ALA C 58 REMARK 465 ILE C 59 REMARK 465 PRO C 60 REMARK 465 ARG C 61 REMARK 465 HIS C 62 REMARK 465 HIS C 63 REMARK 465 HIS C 64 REMARK 465 HIS C 65 REMARK 465 HIS C 66 REMARK 465 HIS C 67 REMARK 465 ALA C 68 REMARK 465 ALA C 69 REMARK 465 ALA C 70 REMARK 465 ASN C 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 HIS A 71 CG ND1 CD2 CE1 NE2 REMARK 470 GLU E 3 CG CD OE1 OE2 REMARK 470 ARG B 62 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 135 CD GLU B 135 OE2 -0.072 REMARK 500 GLU B 154 CG GLU B 154 CD 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 189 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 102 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 GLU B 154 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 86.80 -150.13 REMARK 500 HIS A 71 -65.32 -109.96 REMARK 500 ARG A 96 -37.39 -36.96 REMARK 500 ARG A 193 -5.28 84.35 REMARK 500 SER A 214 -81.05 -119.84 REMARK 500 ASN E 44 97.47 -162.97 REMARK 500 SER B 37 -91.28 -133.81 REMARK 500 GLU B 77 24.78 -150.14 REMARK 500 ASN B 79 8.01 -67.69 REMARK 500 TRP B 141 34.28 -98.18 REMARK 500 ARG B 193 -0.20 84.92 REMARK 500 SER B 214 -76.42 -127.95 REMARK 500 ALA C 16 -178.75 -66.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 24 ASN A 25 -58.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 5C67 A 16 246 UNP P35030 TRY3_HUMAN 81 304 DBREF 5C67 E 8 60 UNP P05067 A4_HUMAN 294 346 DBREF 5C67 B 16 246 UNP P35030 TRY3_HUMAN 81 304 DBREF 5C67 C 8 60 UNP P05067 A4_HUMAN 294 346 SEQADV 5C67 ALA A 127 UNP P35030 THR 188 VARIANT SEQADV 5C67 ALA A 195 UNP P35030 SER 257 ENGINEERED MUTATION SEQADV 5C67 TYR E -9 UNP P05067 EXPRESSION TAG SEQADV 5C67 VAL E -8 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP E -7 UNP P05067 EXPRESSION TAG SEQADV 5C67 TYR E -6 UNP P05067 EXPRESSION TAG SEQADV 5C67 LYS E -5 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP E -4 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP E -3 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP E -2 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP E -1 UNP P05067 EXPRESSION TAG SEQADV 5C67 LYS E 0 UNP P05067 EXPRESSION TAG SEQADV 5C67 GLU E 1 UNP P05067 EXPRESSION TAG SEQADV 5C67 PHE E 2 UNP P05067 EXPRESSION TAG SEQADV 5C67 GLU E 3 UNP P05067 EXPRESSION TAG SEQADV 5C67 VAL E 4 UNP P05067 EXPRESSION TAG SEQADV 5C67 CYS E 5 UNP P05067 EXPRESSION TAG SEQADV 5C67 SER E 6 UNP P05067 EXPRESSION TAG SEQADV 5C67 GLU E 7 UNP P05067 EXPRESSION TAG SEQADV 5C67 GLY E 17 UNP P05067 MET 303 ENGINEERED MUTATION SEQADV 5C67 PHE E 18 UNP P05067 ILE 304 ENGINEERED MUTATION SEQADV 5C67 VAL E 34 UNP P05067 PHE 320 ENGINEERED MUTATION SEQADV 5C67 ARG E 61 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS E 62 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS E 63 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS E 64 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS E 65 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS E 66 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS E 67 UNP P05067 EXPRESSION TAG SEQADV 5C67 ALA E 68 UNP P05067 EXPRESSION TAG SEQADV 5C67 ALA E 69 UNP P05067 EXPRESSION TAG SEQADV 5C67 ALA E 70 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASN E 71 UNP P05067 EXPRESSION TAG SEQADV 5C67 ALA B 127 UNP P35030 THR 188 VARIANT SEQADV 5C67 ALA B 195 UNP P35030 SER 257 ENGINEERED MUTATION SEQADV 5C67 TYR C -9 UNP P05067 EXPRESSION TAG SEQADV 5C67 VAL C -8 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP C -7 UNP P05067 EXPRESSION TAG SEQADV 5C67 TYR C -6 UNP P05067 EXPRESSION TAG SEQADV 5C67 LYS C -5 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP C -4 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP C -3 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP C -2 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASP C -1 UNP P05067 EXPRESSION TAG SEQADV 5C67 LYS C 0 UNP P05067 EXPRESSION TAG SEQADV 5C67 GLU C 1 UNP P05067 EXPRESSION TAG SEQADV 5C67 PHE C 2 UNP P05067 EXPRESSION TAG SEQADV 5C67 GLU C 3 UNP P05067 EXPRESSION TAG SEQADV 5C67 VAL C 4 UNP P05067 EXPRESSION TAG SEQADV 5C67 CYS C 5 UNP P05067 EXPRESSION TAG SEQADV 5C67 SER C 6 UNP P05067 EXPRESSION TAG SEQADV 5C67 GLU C 7 UNP P05067 EXPRESSION TAG SEQADV 5C67 GLY C 17 UNP P05067 MET 303 ENGINEERED MUTATION SEQADV 5C67 PHE C 18 UNP P05067 ILE 304 ENGINEERED MUTATION SEQADV 5C67 VAL C 34 UNP P05067 PHE 320 ENGINEERED MUTATION SEQADV 5C67 ARG C 61 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS C 62 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS C 63 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS C 64 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS C 65 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS C 66 UNP P05067 EXPRESSION TAG SEQADV 5C67 HIS C 67 UNP P05067 EXPRESSION TAG SEQADV 5C67 ALA C 68 UNP P05067 EXPRESSION TAG SEQADV 5C67 ALA C 69 UNP P05067 EXPRESSION TAG SEQADV 5C67 ALA C 70 UNP P05067 EXPRESSION TAG SEQADV 5C67 ASN C 71 UNP P05067 EXPRESSION TAG SEQRES 1 A 224 ILE VAL GLY GLY TYR THR CYS GLU GLU ASN SER LEU PRO SEQRES 2 A 224 TYR GLN VAL SER LEU ASN SER GLY SER HIS PHE CYS GLY SEQRES 3 A 224 GLY SER LEU ILE SER GLU GLN TRP VAL VAL SER ALA ALA SEQRES 4 A 224 HIS CYS TYR LYS THR ARG ILE GLN VAL ARG LEU GLY GLU SEQRES 5 A 224 HIS ASN ILE LYS VAL LEU GLU GLY ASN GLU GLN PHE ILE SEQRES 6 A 224 ASN ALA ALA LYS ILE ILE ARG HIS PRO LYS TYR ASN ARG SEQRES 7 A 224 ASP THR LEU ASP ASN ASP ILE MET LEU ILE LYS LEU SER SEQRES 8 A 224 SER PRO ALA VAL ILE ASN ALA ARG VAL SER THR ILE SER SEQRES 9 A 224 LEU PRO THR ALA PRO PRO ALA ALA GLY THR GLU CYS LEU SEQRES 10 A 224 ILE SER GLY TRP GLY ASN THR LEU SER PHE GLY ALA ASP SEQRES 11 A 224 TYR PRO ASP GLU LEU LYS CYS LEU ASP ALA PRO VAL LEU SEQRES 12 A 224 THR GLN ALA GLU CYS LYS ALA SER TYR PRO GLY LYS ILE SEQRES 13 A 224 THR ASN SER MET PHE CYS VAL GLY PHE LEU GLU GLY GLY SEQRES 14 A 224 LYS ASP SER CYS GLN ARG ASP ALA GLY GLY PRO VAL VAL SEQRES 15 A 224 CYS ASN GLY GLN LEU GLN GLY VAL VAL SER TRP GLY HIS SEQRES 16 A 224 GLY CYS ALA TRP LYS ASN ARG PRO GLY VAL TYR THR LYS SEQRES 17 A 224 VAL TYR ASN TYR VAL ASP TRP ILE LYS ASP THR ILE ALA SEQRES 18 A 224 ALA ASN SER SEQRES 1 E 81 TYR VAL ASP TYR LYS ASP ASP ASP ASP LYS GLU PHE GLU SEQRES 2 E 81 VAL CYS SER GLU GLN ALA GLU THR GLY PRO CYS ARG ALA SEQRES 3 E 81 GLY PHE SER ARG TRP TYR PHE ASP VAL THR GLU GLY LYS SEQRES 4 E 81 CYS ALA PRO PHE VAL TYR GLY GLY CYS GLY GLY ASN ARG SEQRES 5 E 81 ASN ASN PHE ASP THR GLU GLU TYR CYS MET ALA VAL CYS SEQRES 6 E 81 GLY SER ALA ILE PRO ARG HIS HIS HIS HIS HIS HIS ALA SEQRES 7 E 81 ALA ALA ASN SEQRES 1 B 224 ILE VAL GLY GLY TYR THR CYS GLU GLU ASN SER LEU PRO SEQRES 2 B 224 TYR GLN VAL SER LEU ASN SER GLY SER HIS PHE CYS GLY SEQRES 3 B 224 GLY SER LEU ILE SER GLU GLN TRP VAL VAL SER ALA ALA SEQRES 4 B 224 HIS CYS TYR LYS THR ARG ILE GLN VAL ARG LEU GLY GLU SEQRES 5 B 224 HIS ASN ILE LYS VAL LEU GLU GLY ASN GLU GLN PHE ILE SEQRES 6 B 224 ASN ALA ALA LYS ILE ILE ARG HIS PRO LYS TYR ASN ARG SEQRES 7 B 224 ASP THR LEU ASP ASN ASP ILE MET LEU ILE LYS LEU SER SEQRES 8 B 224 SER PRO ALA VAL ILE ASN ALA ARG VAL SER THR ILE SER SEQRES 9 B 224 LEU PRO THR ALA PRO PRO ALA ALA GLY THR GLU CYS LEU SEQRES 10 B 224 ILE SER GLY TRP GLY ASN THR LEU SER PHE GLY ALA ASP SEQRES 11 B 224 TYR PRO ASP GLU LEU LYS CYS LEU ASP ALA PRO VAL LEU SEQRES 12 B 224 THR GLN ALA GLU CYS LYS ALA SER TYR PRO GLY LYS ILE SEQRES 13 B 224 THR ASN SER MET PHE CYS VAL GLY PHE LEU GLU GLY GLY SEQRES 14 B 224 LYS ASP SER CYS GLN ARG ASP ALA GLY GLY PRO VAL VAL SEQRES 15 B 224 CYS ASN GLY GLN LEU GLN GLY VAL VAL SER TRP GLY HIS SEQRES 16 B 224 GLY CYS ALA TRP LYS ASN ARG PRO GLY VAL TYR THR LYS SEQRES 17 B 224 VAL TYR ASN TYR VAL ASP TRP ILE LYS ASP THR ILE ALA SEQRES 18 B 224 ALA ASN SER SEQRES 1 C 81 TYR VAL ASP TYR LYS ASP ASP ASP ASP LYS GLU PHE GLU SEQRES 2 C 81 VAL CYS SER GLU GLN ALA GLU THR GLY PRO CYS ARG ALA SEQRES 3 C 81 GLY PHE SER ARG TRP TYR PHE ASP VAL THR GLU GLY LYS SEQRES 4 C 81 CYS ALA PRO PHE VAL TYR GLY GLY CYS GLY GLY ASN ARG SEQRES 5 C 81 ASN ASN PHE ASP THR GLU GLU TYR CYS MET ALA VAL CYS SEQRES 6 C 81 GLY SER ALA ILE PRO ARG HIS HIS HIS HIS HIS HIS ALA SEQRES 7 C 81 ALA ALA ASN FORMUL 5 HOH *87(H2 O) HELIX 1 AA1 ALA A 55 TYR A 59 5 5 HELIX 2 AA2 THR A 164 TYR A 172 1 9 HELIX 3 AA3 TYR A 234 ASN A 245 1 12 HELIX 4 AA4 SER A 246 SER A 246 5 1 HELIX 5 AA5 GLU E 3 GLU E 7 5 5 HELIX 6 AA6 THR E 47 GLY E 56 1 10 HELIX 7 AA7 ALA B 55 TYR B 59 5 5 HELIX 8 AA8 THR B 164 TYR B 172 1 9 HELIX 9 AA9 TYR B 234 ASN B 245 1 12 HELIX 10 AB1 THR C 47 CYS C 55 1 9 SHEET 1 AA1 7 TYR A 20 THR A 21 0 SHEET 2 AA1 7 LYS A 156 PRO A 161 -1 O CYS A 157 N TYR A 20 SHEET 3 AA1 7 GLU A 135 GLY A 140 -1 N CYS A 136 O ALA A 160 SHEET 4 AA1 7 PRO A 198 CYS A 201 -1 O VAL A 200 N LEU A 137 SHEET 5 AA1 7 GLN A 204 TRP A 215 -1 O GLN A 210 N VAL A 199 SHEET 6 AA1 7 GLY A 226 LYS A 230 -1 O VAL A 227 N TRP A 215 SHEET 7 AA1 7 MET A 180 VAL A 183 -1 N PHE A 181 O TYR A 228 SHEET 1 AA2 7 GLN A 30 ASN A 34 0 SHEET 2 AA2 7 HIS A 40 SER A 48 -1 O CYS A 42 N LEU A 33 SHEET 3 AA2 7 TRP A 51 SER A 54 -1 O VAL A 53 N SER A 45 SHEET 4 AA2 7 MET A 104 LEU A 108 -1 O ILE A 106 N VAL A 52 SHEET 5 AA2 7 GLN A 81 ARG A 90 -1 N ILE A 89 O LEU A 105 SHEET 6 AA2 7 GLN A 64 LEU A 67 -1 N VAL A 65 O ILE A 83 SHEET 7 AA2 7 GLN A 30 ASN A 34 -1 N ASN A 34 O GLN A 64 SHEET 1 AA3 2 PHE E 18 ASP E 24 0 SHEET 2 AA3 2 LYS E 29 TYR E 35 -1 O TYR E 35 N PHE E 18 SHEET 1 AA4 7 TYR B 20 THR B 21 0 SHEET 2 AA4 7 LYS B 156 PRO B 161 -1 O CYS B 157 N TYR B 20 SHEET 3 AA4 7 GLU B 135 GLY B 140 -1 N CYS B 136 O ALA B 160 SHEET 4 AA4 7 PRO B 198 CYS B 201 -1 O VAL B 200 N LEU B 137 SHEET 5 AA4 7 GLN B 204 TRP B 215 -1 O GLN B 204 N CYS B 201 SHEET 6 AA4 7 GLY B 226 LYS B 230 -1 O VAL B 227 N TRP B 215 SHEET 7 AA4 7 MET B 180 VAL B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 AA5 7 GLN B 30 ASN B 34 0 SHEET 2 AA5 7 HIS B 40 SER B 48 -1 O CYS B 42 N LEU B 33 SHEET 3 AA5 7 TRP B 51 SER B 54 -1 O VAL B 53 N SER B 45 SHEET 4 AA5 7 MET B 104 LEU B 108 -1 O MET B 104 N SER B 54 SHEET 5 AA5 7 GLN B 81 ARG B 90 -1 N ILE B 89 O LEU B 105 SHEET 6 AA5 7 GLN B 64 LEU B 67 -1 N LEU B 67 O GLN B 81 SHEET 7 AA5 7 GLN B 30 ASN B 34 -1 N SER B 32 O ARG B 66 SHEET 1 AA6 2 PHE C 18 ASP C 24 0 SHEET 2 AA6 2 LYS C 29 TYR C 35 -1 O ALA C 31 N TYR C 22 SSBOND 1 CYS A 22 CYS A 157 1555 1555 2.11 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.11 SSBOND 3 CYS A 136 CYS A 201 1555 1555 2.07 SSBOND 4 CYS A 168 CYS A 182 1555 1555 2.12 SSBOND 5 CYS A 191 CYS A 220 1555 1555 2.15 SSBOND 6 CYS E 5 CYS E 55 1555 1555 2.09 SSBOND 7 CYS E 14 CYS E 38 1555 1555 2.11 SSBOND 8 CYS E 30 CYS E 51 1555 1555 2.07 SSBOND 9 CYS B 22 CYS B 157 1555 1555 2.08 SSBOND 10 CYS B 42 CYS B 58 1555 1555 2.05 SSBOND 11 CYS B 136 CYS B 201 1555 1555 2.10 SSBOND 12 CYS B 168 CYS B 182 1555 1555 2.07 SSBOND 13 CYS B 191 CYS B 220 1555 1555 2.16 SSBOND 14 CYS C 5 CYS C 55 1555 1555 2.13 SSBOND 15 CYS C 14 CYS C 38 1555 1555 2.11 SSBOND 16 CYS C 30 CYS C 51 1555 1555 2.05 CRYST1 78.150 78.150 243.730 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012796 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004103 0.00000