HEADER HYDROLASE/LIGASE 22-JUN-15 5C6D TITLE CRYSTAL STRUCTURE OF USP7 IN COMPLEX WITH UHRF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 561-881; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 7,HERPESVIRUS-ASSOCIATED UBIQUITIN- COMPND 6 SPECIFIC PROTEASE,UBIQUITIN THIOESTERASE 7,UBIQUITIN-SPECIFIC- COMPND 7 PROCESSING PROTEASE 7; COMPND 8 EC: 3.4.19.12; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: UNP RESIDUES 634-665; COMPND 14 SYNONYM: INVERTED CCAAT BOX-BINDING PROTEIN OF 90 KDA,NUCLEAR PROTEIN COMPND 15 95,NUCLEAR ZINC FINGER PROTEIN NP95,HNP95,RING FINGER PROTEIN 106, COMPND 16 TRANSCRIPTION FACTOR ICBP90,UBIQUITIN-LIKE PHD AND RING FINGER COMPND 17 DOMAIN-CONTAINING PROTEIN 1,HUHRF1,UBIQUITIN-LIKE-CONTAINING PHD AND COMPND 18 RING FINGER DOMAINS PROTEIN 1; COMPND 19 EC: 6.3.2.-; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP7, HAUSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UHRF1, ICBP90, NP95, RNF106; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS USP7, UHRF1, HYDROLASE-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.-M.ZHANG,J.SONG REVDAT 3 27-SEP-23 5C6D 1 REMARK REVDAT 2 16-SEP-15 5C6D 1 JRNL REVDAT 1 09-SEP-15 5C6D 0 JRNL AUTH Z.M.ZHANG,S.B.ROTHBART,D.F.ALLISON,Q.CAI,J.S.HARRISON,L.LI, JRNL AUTH 2 Y.WANG,B.D.STRAHL,G.G.WANG,J.SONG JRNL TITL AN ALLOSTERIC INTERACTION LINKS USP7 TO DEUBIQUITINATION AND JRNL TITL 2 CHROMATIN TARGETING OF UHRF1. JRNL REF CELL REP V. 12 1400 2015 JRNL REFN ESSN 2211-1247 JRNL PMID 26299963 JRNL DOI 10.1016/J.CELREP.2015.07.046 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 36459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.460 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2625 - 5.5213 0.95 2472 148 0.1763 0.2253 REMARK 3 2 5.5213 - 4.3833 0.97 2454 134 0.1553 0.1743 REMARK 3 3 4.3833 - 3.8295 0.98 2489 144 0.1576 0.1985 REMARK 3 4 3.8295 - 3.4795 0.98 2473 140 0.1790 0.2131 REMARK 3 5 3.4795 - 3.2301 0.98 2455 140 0.1951 0.2619 REMARK 3 6 3.2301 - 3.0397 0.98 2490 140 0.2142 0.2666 REMARK 3 7 3.0397 - 2.8875 0.99 2452 142 0.2050 0.2950 REMARK 3 8 2.8875 - 2.7618 0.99 2484 145 0.2036 0.2383 REMARK 3 9 2.7618 - 2.6555 0.99 2479 143 0.2081 0.2909 REMARK 3 10 2.6555 - 2.5639 0.99 2473 145 0.2159 0.2591 REMARK 3 11 2.5639 - 2.4837 0.99 2471 141 0.2319 0.2767 REMARK 3 12 2.4837 - 2.4127 0.99 2468 147 0.2389 0.3093 REMARK 3 13 2.4127 - 2.3492 0.99 2497 143 0.2481 0.3149 REMARK 3 14 2.3492 - 2.2919 0.92 2313 137 0.2609 0.3234 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5160 REMARK 3 ANGLE : 1.043 7005 REMARK 3 CHIRALITY : 0.039 775 REMARK 3 PLANARITY : 0.005 916 REMARK 3 DIHEDRAL : 13.754 1885 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 561 THROUGH 664 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3496 10.9981 24.6342 REMARK 3 T TENSOR REMARK 3 T11: 0.5791 T22: 0.6698 REMARK 3 T33: 0.4708 T12: 0.2803 REMARK 3 T13: -0.0039 T23: 0.1361 REMARK 3 L TENSOR REMARK 3 L11: 3.2912 L22: 3.7831 REMARK 3 L33: 3.4537 L12: -1.1569 REMARK 3 L13: -1.2968 L23: 0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.3813 S12: 1.1427 S13: 0.4215 REMARK 3 S21: -0.8724 S22: -0.5859 S23: -0.1063 REMARK 3 S31: -0.3837 S32: -0.2487 S33: 0.1976 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 665 THROUGH 800 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.8553 6.9467 42.4126 REMARK 3 T TENSOR REMARK 3 T11: 0.4062 T22: 0.3325 REMARK 3 T33: 0.5719 T12: 0.0744 REMARK 3 T13: 0.0553 T23: -0.0881 REMARK 3 L TENSOR REMARK 3 L11: 4.9698 L22: 2.4276 REMARK 3 L33: 1.8356 L12: -1.5373 REMARK 3 L13: 0.5696 L23: -0.0807 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: 0.2535 S13: -0.5783 REMARK 3 S21: 0.1572 S22: -0.1509 S23: 0.7616 REMARK 3 S31: -0.1402 S32: -0.5610 S33: 0.1955 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 801 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7367 10.5544 64.7238 REMARK 3 T TENSOR REMARK 3 T11: 0.5951 T22: 0.2618 REMARK 3 T33: 0.3917 T12: -0.0592 REMARK 3 T13: -0.0348 T23: 0.0918 REMARK 3 L TENSOR REMARK 3 L11: 7.5485 L22: 4.0437 REMARK 3 L33: 5.8012 L12: -1.3358 REMARK 3 L13: -0.4396 L23: 3.6310 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.1519 S13: 0.4440 REMARK 3 S21: -0.2293 S22: -0.0466 S23: -0.5445 REMARK 3 S31: -0.7903 S32: 0.2491 S33: 0.0456 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 560 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6932 1.4896 31.0396 REMARK 3 T TENSOR REMARK 3 T11: 0.3338 T22: 0.3328 REMARK 3 T33: 0.3824 T12: 0.1136 REMARK 3 T13: 0.0361 T23: 0.1018 REMARK 3 L TENSOR REMARK 3 L11: 5.1518 L22: 3.5330 REMARK 3 L33: 5.0280 L12: -1.3361 REMARK 3 L13: -1.0552 L23: 1.9626 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: -0.0464 S13: 0.2511 REMARK 3 S21: 0.1509 S22: -0.0136 S23: -0.1639 REMARK 3 S31: -0.0953 S32: 0.1063 S33: -0.0696 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 670 THROUGH 739 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9445 -14.9880 19.1865 REMARK 3 T TENSOR REMARK 3 T11: 0.5813 T22: 0.5544 REMARK 3 T33: 0.5788 T12: 0.2650 REMARK 3 T13: 0.0530 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 4.3106 L22: 2.0658 REMARK 3 L33: 3.4730 L12: -0.1651 REMARK 3 L13: -0.0616 L23: 0.1703 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.2099 S13: -0.8992 REMARK 3 S21: -0.0900 S22: -0.0538 S23: -0.1530 REMARK 3 S31: 0.9134 S32: 0.6025 S33: 0.0809 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 740 THROUGH 800 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5461 -6.8554 6.6591 REMARK 3 T TENSOR REMARK 3 T11: 0.6424 T22: 0.9592 REMARK 3 T33: 0.4503 T12: 0.2598 REMARK 3 T13: 0.1176 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: 3.7600 L22: 3.4980 REMARK 3 L33: 3.3441 L12: -2.2700 REMARK 3 L13: 2.0506 L23: -1.0843 REMARK 3 S TENSOR REMARK 3 S11: 0.4520 S12: 1.1983 S13: -0.0786 REMARK 3 S21: -0.9269 S22: -0.5483 S23: -0.3520 REMARK 3 S31: 0.6114 S32: 0.6618 S33: 0.1263 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 801 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7094 11.9642 -9.3266 REMARK 3 T TENSOR REMARK 3 T11: 0.6762 T22: 0.6893 REMARK 3 T33: 0.3238 T12: 0.1424 REMARK 3 T13: -0.0611 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 4.6786 L22: 3.6079 REMARK 3 L33: 3.5425 L12: -1.1903 REMARK 3 L13: -2.0775 L23: 0.1074 REMARK 3 S TENSOR REMARK 3 S11: -0.0743 S12: -0.9576 S13: -0.0832 REMARK 3 S21: 0.2684 S22: 0.2766 S23: 0.0886 REMARK 3 S31: -0.2336 S32: 0.0409 S33: -0.1459 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 652 THROUGH 664 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.2261 26.6178 39.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.6243 T22: 0.3138 REMARK 3 T33: 0.6048 T12: 0.0698 REMARK 3 T13: 0.0163 T23: 0.1685 REMARK 3 L TENSOR REMARK 3 L11: 5.5558 L22: 5.3486 REMARK 3 L33: 5.7102 L12: 5.0041 REMARK 3 L13: -0.8577 L23: 0.5983 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: 0.1273 S13: 0.6740 REMARK 3 S21: 0.5557 S22: -0.4370 S23: -0.4872 REMARK 3 S31: -0.2986 S32: 0.1146 S33: 0.4110 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 656 THROUGH 662 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8482 4.7564 18.7667 REMARK 3 T TENSOR REMARK 3 T11: 0.6625 T22: 1.1049 REMARK 3 T33: 1.0024 T12: 0.2518 REMARK 3 T13: 0.1392 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 4.0673 L22: 6.1382 REMARK 3 L33: 1.9981 L12: 2.9677 REMARK 3 L13: -3.2345 L23: 5.4667 REMARK 3 S TENSOR REMARK 3 S11: 0.9396 S12: 0.9025 S13: 0.6971 REMARK 3 S21: -0.7075 S22: -0.2798 S23: -0.5461 REMARK 3 S31: -0.9667 S32: 0.6461 S33: -0.6361 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2YLM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CHES (PH 9.0), 20% PEG8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.80300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.80300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 560 REMARK 465 ASP A 639 REMARK 465 ASN A 640 REMARK 465 GLU A 641 REMARK 465 GLU A 668 REMARK 465 LEU A 669 REMARK 465 ALA A 670 REMARK 465 ALA A 671 REMARK 465 SER A 672 REMARK 465 GLY A 673 REMARK 465 ALA A 674 REMARK 465 ASP B 639 REMARK 465 ASN B 640 REMARK 465 GLU B 641 REMARK 465 ALA B 642 REMARK 465 GLY B 844 REMARK 465 TYR B 845 REMARK 465 ARG B 846 REMARK 465 ASP B 847 REMARK 465 ARG B 871 REMARK 465 SER C 646 REMARK 465 GLU C 647 REMARK 465 GLY C 648 REMARK 465 GLY C 649 REMARK 465 PHE C 650 REMARK 465 ALA C 651 REMARK 465 ALA C 665 REMARK 465 GLY C 666 REMARK 465 GLY C 667 REMARK 465 GLY C 668 REMARK 465 PRO C 669 REMARK 465 SER C 670 REMARK 465 ARG C 671 REMARK 465 ALA C 672 REMARK 465 GLY C 673 REMARK 465 SER C 674 REMARK 465 PRO C 675 REMARK 465 ARG C 676 REMARK 465 ARG C 677 REMARK 465 THR C 678 REMARK 465 SER D 646 REMARK 465 GLU D 647 REMARK 465 GLY D 648 REMARK 465 GLY D 649 REMARK 465 PHE D 650 REMARK 465 ALA D 651 REMARK 465 SER D 652 REMARK 465 PRO D 653 REMARK 465 ARG D 654 REMARK 465 THR D 655 REMARK 465 LYS D 663 REMARK 465 SER D 664 REMARK 465 ALA D 665 REMARK 465 GLY D 666 REMARK 465 GLY D 667 REMARK 465 GLY D 668 REMARK 465 PRO D 669 REMARK 465 SER D 670 REMARK 465 ARG D 671 REMARK 465 ALA D 672 REMARK 465 GLY D 673 REMARK 465 SER D 674 REMARK 465 PRO D 675 REMARK 465 ARG D 676 REMARK 465 ARG D 677 REMARK 465 THR D 678 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 562 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 563 CG CD1 CD2 REMARK 470 LYS A 588 CE NZ REMARK 470 LYS A 590 CE NZ REMARK 470 LYS A 595 CG CD CE NZ REMARK 470 GLN A 607 CG CD OE1 NE2 REMARK 470 ASP A 618 CG OD1 OD2 REMARK 470 LYS A 646 CG CD CE NZ REMARK 470 GLU A 650 CG CD OE1 OE2 REMARK 470 LYS A 678 CG CD CE NZ REMARK 470 LYS A 681 CG CD CE NZ REMARK 470 LYS A 695 CG CD CE NZ REMARK 470 GLN A 728 CG CD OE1 NE2 REMARK 470 LYS A 755 CE NZ REMARK 470 ASP A 772 CG OD1 OD2 REMARK 470 GLU A 774 CG CD OE1 OE2 REMARK 470 ARG A 793 CZ NH1 NH2 REMARK 470 ASN A 805 CG OD1 ND2 REMARK 470 LYS A 824 CG CD CE NZ REMARK 470 GLN A 828 CG CD OE1 NE2 REMARK 470 ASP A 847 CG OD1 OD2 REMARK 470 GLU A 858 CG CD OE1 OE2 REMARK 470 ARG A 862 NE CZ NH1 NH2 REMARK 470 PHE A 867 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 869 CG CD CE NZ REMARK 470 PRO A 870 CG CD REMARK 470 ARG A 871 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 872 CG CD OE1 NE2 REMARK 470 LYS B 588 CE NZ REMARK 470 LYS B 595 CD CE NZ REMARK 470 ASN B 599 CG OD1 ND2 REMARK 470 GLN B 607 CG CD OE1 NE2 REMARK 470 GLN B 611 CG CD OE1 NE2 REMARK 470 ASN B 645 CG OD1 ND2 REMARK 470 LYS B 646 CG CD CE NZ REMARK 470 GLU B 668 CG CD OE1 OE2 REMARK 470 LYS B 678 CG CD CE NZ REMARK 470 LYS B 681 CD CE NZ REMARK 470 LYS B 695 CG CD CE NZ REMARK 470 ARG B 697 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 712 CG CD CE NZ REMARK 470 ARG B 714 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 727 CG1 CG2 CD1 REMARK 470 LYS B 755 CG CD CE NZ REMARK 470 GLU B 774 CG CD OE1 OE2 REMARK 470 ASP B 776 CG OD1 OD2 REMARK 470 GLU B 779 CG CD OE1 OE2 REMARK 470 LYS B 784 NZ REMARK 470 ARG B 788 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 824 CE NZ REMARK 470 GLN B 828 CG CD OE1 NE2 REMARK 470 LYS B 841 CE NZ REMARK 470 GLN B 843 CG CD OE1 NE2 REMARK 470 GLU B 858 CG CD OE1 OE2 REMARK 470 PHE B 867 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 869 CG CD CE NZ REMARK 470 LYS C 661 CE NZ REMARK 470 LYS C 663 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 936 O HOH A 951 1.94 REMARK 500 OE1 GLU B 655 O HOH B 901 1.95 REMARK 500 O HOH A 955 O HOH A 965 2.02 REMARK 500 O HOH A 934 O HOH A 963 2.05 REMARK 500 NH1 ARG A 854 O HOH A 901 2.05 REMARK 500 O HOH A 967 O HOH B 945 2.06 REMARK 500 O HOH A 949 O HOH A 959 2.08 REMARK 500 O HOH B 910 O HOH B 946 2.09 REMARK 500 O HOH A 966 O HOH A 969 2.12 REMARK 500 O HOH B 901 O HOH B 944 2.12 REMARK 500 O LYS B 739 O HOH B 902 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 582 -164.53 65.05 REMARK 500 ASP B 582 -158.59 63.36 REMARK 500 REMARK 500 REMARK: NULL DBREF 5C6D A 561 881 UNP Q93009 UBP7_HUMAN 561 881 DBREF 5C6D B 561 881 UNP Q93009 UBP7_HUMAN 561 881 DBREF 5C6D C 647 678 UNP Q96T88 UHRF1_HUMAN 634 665 DBREF 5C6D D 647 678 UNP Q96T88 UHRF1_HUMAN 634 665 SEQADV 5C6D SER A 560 UNP Q93009 EXPRESSION TAG SEQADV 5C6D SER B 560 UNP Q93009 EXPRESSION TAG SEQADV 5C6D SER C 646 UNP Q96T88 EXPRESSION TAG SEQADV 5C6D SER D 646 UNP Q96T88 EXPRESSION TAG SEQRES 1 A 322 SER ALA HIS LEU TYR MET GLN VAL GLN ILE VAL ALA GLU SEQRES 2 A 322 ASP GLN PHE CYS GLY HIS GLN GLY ASN ASP MET TYR ASP SEQRES 3 A 322 GLU GLU LYS VAL LYS TYR THR VAL PHE LYS VAL LEU LYS SEQRES 4 A 322 ASN SER SER LEU ALA GLU PHE VAL GLN SER LEU SER GLN SEQRES 5 A 322 THR MET GLY PHE PRO GLN ASP GLN ILE ARG LEU TRP PRO SEQRES 6 A 322 MET GLN ALA ARG SER ASN GLY THR LYS ARG PRO ALA MET SEQRES 7 A 322 LEU ASP ASN GLU ALA ASP GLY ASN LYS THR MET ILE GLU SEQRES 8 A 322 LEU SER ASP ASN GLU ASN PRO TRP THR ILE PHE LEU GLU SEQRES 9 A 322 THR VAL ASP PRO GLU LEU ALA ALA SER GLY ALA THR LEU SEQRES 10 A 322 PRO LYS PHE ASP LYS ASP HIS ASP VAL MET LEU PHE LEU SEQRES 11 A 322 LYS MET TYR ASP PRO LYS THR ARG SER LEU ASN TYR CYS SEQRES 12 A 322 GLY HIS ILE TYR THR PRO ILE SER CYS LYS ILE ARG ASP SEQRES 13 A 322 LEU LEU PRO VAL MET CYS ASP ARG ALA GLY PHE ILE GLN SEQRES 14 A 322 ASP THR SER LEU ILE LEU TYR GLU GLU VAL LYS PRO ASN SEQRES 15 A 322 LEU THR GLU ARG ILE GLN ASP TYR ASP VAL SER LEU ASP SEQRES 16 A 322 LYS ALA LEU ASP GLU LEU MET ASP GLY ASP ILE ILE VAL SEQRES 17 A 322 PHE GLN LYS ASP ASP PRO GLU ASN ASP ASN SER GLU LEU SEQRES 18 A 322 PRO THR ALA LYS GLU TYR PHE ARG ASP LEU TYR HIS ARG SEQRES 19 A 322 VAL ASP VAL ILE PHE CYS ASP LYS THR ILE PRO ASN ASP SEQRES 20 A 322 PRO GLY PHE VAL VAL THR LEU SER ASN ARG MET ASN TYR SEQRES 21 A 322 PHE GLN VAL ALA LYS THR VAL ALA GLN ARG LEU ASN THR SEQRES 22 A 322 ASP PRO MET LEU LEU GLN PHE PHE LYS SER GLN GLY TYR SEQRES 23 A 322 ARG ASP GLY PRO GLY ASN PRO LEU ARG HIS ASN TYR GLU SEQRES 24 A 322 GLY THR LEU ARG ASP LEU LEU GLN PHE PHE LYS PRO ARG SEQRES 25 A 322 GLN PRO LYS LYS LEU TYR TYR GLN GLN LEU SEQRES 1 B 322 SER ALA HIS LEU TYR MET GLN VAL GLN ILE VAL ALA GLU SEQRES 2 B 322 ASP GLN PHE CYS GLY HIS GLN GLY ASN ASP MET TYR ASP SEQRES 3 B 322 GLU GLU LYS VAL LYS TYR THR VAL PHE LYS VAL LEU LYS SEQRES 4 B 322 ASN SER SER LEU ALA GLU PHE VAL GLN SER LEU SER GLN SEQRES 5 B 322 THR MET GLY PHE PRO GLN ASP GLN ILE ARG LEU TRP PRO SEQRES 6 B 322 MET GLN ALA ARG SER ASN GLY THR LYS ARG PRO ALA MET SEQRES 7 B 322 LEU ASP ASN GLU ALA ASP GLY ASN LYS THR MET ILE GLU SEQRES 8 B 322 LEU SER ASP ASN GLU ASN PRO TRP THR ILE PHE LEU GLU SEQRES 9 B 322 THR VAL ASP PRO GLU LEU ALA ALA SER GLY ALA THR LEU SEQRES 10 B 322 PRO LYS PHE ASP LYS ASP HIS ASP VAL MET LEU PHE LEU SEQRES 11 B 322 LYS MET TYR ASP PRO LYS THR ARG SER LEU ASN TYR CYS SEQRES 12 B 322 GLY HIS ILE TYR THR PRO ILE SER CYS LYS ILE ARG ASP SEQRES 13 B 322 LEU LEU PRO VAL MET CYS ASP ARG ALA GLY PHE ILE GLN SEQRES 14 B 322 ASP THR SER LEU ILE LEU TYR GLU GLU VAL LYS PRO ASN SEQRES 15 B 322 LEU THR GLU ARG ILE GLN ASP TYR ASP VAL SER LEU ASP SEQRES 16 B 322 LYS ALA LEU ASP GLU LEU MET ASP GLY ASP ILE ILE VAL SEQRES 17 B 322 PHE GLN LYS ASP ASP PRO GLU ASN ASP ASN SER GLU LEU SEQRES 18 B 322 PRO THR ALA LYS GLU TYR PHE ARG ASP LEU TYR HIS ARG SEQRES 19 B 322 VAL ASP VAL ILE PHE CYS ASP LYS THR ILE PRO ASN ASP SEQRES 20 B 322 PRO GLY PHE VAL VAL THR LEU SER ASN ARG MET ASN TYR SEQRES 21 B 322 PHE GLN VAL ALA LYS THR VAL ALA GLN ARG LEU ASN THR SEQRES 22 B 322 ASP PRO MET LEU LEU GLN PHE PHE LYS SER GLN GLY TYR SEQRES 23 B 322 ARG ASP GLY PRO GLY ASN PRO LEU ARG HIS ASN TYR GLU SEQRES 24 B 322 GLY THR LEU ARG ASP LEU LEU GLN PHE PHE LYS PRO ARG SEQRES 25 B 322 GLN PRO LYS LYS LEU TYR TYR GLN GLN LEU SEQRES 1 C 33 SER GLU GLY GLY PHE ALA SER PRO ARG THR GLY LYS GLY SEQRES 2 C 33 LYS TRP LYS ARG LYS SER ALA GLY GLY GLY PRO SER ARG SEQRES 3 C 33 ALA GLY SER PRO ARG ARG THR SEQRES 1 D 33 SER GLU GLY GLY PHE ALA SER PRO ARG THR GLY LYS GLY SEQRES 2 D 33 LYS TRP LYS ARG LYS SER ALA GLY GLY GLY PRO SER ARG SEQRES 3 D 33 ALA GLY SER PRO ARG ARG THR FORMUL 5 HOH *118(H2 O) HELIX 1 AA1 ALA A 571 PHE A 575 5 5 HELIX 2 AA2 SER A 601 GLY A 614 1 14 HELIX 3 AA3 PRO A 616 ASP A 618 5 3 HELIX 4 AA4 THR A 647 SER A 652 1 6 HELIX 5 AA5 ILE A 713 ASP A 715 5 3 HELIX 6 AA6 LEU A 716 GLY A 725 1 10 HELIX 7 AA7 SER A 752 LEU A 757 1 6 HELIX 8 AA8 ASP A 772 SER A 778 5 7 HELIX 9 AA9 THR A 782 HIS A 792 1 11 HELIX 10 AB1 ASN A 818 LEU A 830 1 13 HELIX 11 AB2 ASP A 833 MET A 835 5 3 HELIX 12 AB3 THR A 860 GLN A 866 1 7 HELIX 13 AB4 SER B 560 HIS B 562 5 3 HELIX 14 AB5 ALA B 571 PHE B 575 5 5 HELIX 15 AB6 SER B 601 GLY B 614 1 14 HELIX 16 AB7 PRO B 616 ASP B 618 5 3 HELIX 17 AB8 THR B 647 SER B 652 1 6 HELIX 18 AB9 ASP B 666 ALA B 670 5 5 HELIX 19 AC1 LYS B 712 ASP B 715 5 4 HELIX 20 AC2 LEU B 716 ALA B 724 1 9 HELIX 21 AC3 SER B 752 LEU B 757 1 6 HELIX 22 AC4 ASP B 772 SER B 778 5 7 HELIX 23 AC5 THR B 782 HIS B 792 1 11 HELIX 24 AC6 ASN B 818 ASN B 831 1 14 HELIX 25 AC7 ASP B 833 MET B 835 5 3 HELIX 26 AC8 THR B 860 LEU B 865 1 6 SHEET 1 AA110 LYS A 633 PRO A 635 0 SHEET 2 AA110 ILE A 620 ALA A 627 -1 N GLN A 626 O ARG A 634 SHEET 3 AA110 TRP A 658 THR A 664 -1 O PHE A 661 N TRP A 623 SHEET 4 AA110 TYR A 564 VAL A 570 1 N GLN A 568 O TRP A 658 SHEET 5 AA110 LYS A 588 LEU A 597 -1 O VAL A 596 N MET A 565 SHEET 6 AA110 LYS B 588 LEU B 597 -1 O VAL B 589 N VAL A 593 SHEET 7 AA110 TYR B 564 VAL B 570 -1 N ILE B 569 O THR B 592 SHEET 8 AA110 TRP B 658 THR B 664 1 O TRP B 658 N GLN B 568 SHEET 9 AA110 ILE B 620 ALA B 627 -1 N TRP B 623 O PHE B 661 SHEET 10 AA110 LYS B 633 PRO B 635 -1 O ARG B 634 N GLN B 626 SHEET 1 AA2 5 SER A 698 PRO A 708 0 SHEET 2 AA2 5 ASP A 684 ASP A 693 -1 N ASP A 693 O SER A 698 SHEET 3 AA2 5 ASP A 764 LYS A 770 1 O PHE A 768 N TYR A 692 SHEET 4 AA2 5 LEU A 732 LYS A 739 -1 N TYR A 735 O VAL A 767 SHEET 5 AA2 5 LEU A 742 ARG A 745 -1 O GLU A 744 N GLU A 736 SHEET 1 AA3 4 PHE A 809 SER A 814 0 SHEET 2 AA3 4 ARG A 793 ASP A 800 -1 N VAL A 794 O LEU A 813 SHEET 3 AA3 4 LYS A 875 GLN A 880 1 O LEU A 876 N ILE A 797 SHEET 4 AA3 4 LEU A 837 PHE A 840 -1 N GLN A 838 O GLN A 879 SHEET 1 AA4 5 SER B 698 PRO B 708 0 SHEET 2 AA4 5 ASP B 684 ASP B 693 -1 N MET B 691 O ASN B 700 SHEET 3 AA4 5 ASP B 764 LYS B 770 1 O PHE B 768 N TYR B 692 SHEET 4 AA4 5 LEU B 732 LYS B 739 -1 N ILE B 733 O GLN B 769 SHEET 5 AA4 5 LEU B 742 ARG B 745 -1 O GLU B 744 N GLU B 736 SHEET 1 AA5 4 PHE B 809 SER B 814 0 SHEET 2 AA5 4 ARG B 793 ASP B 800 -1 N VAL B 794 O LEU B 813 SHEET 3 AA5 4 LYS B 874 GLN B 880 1 O LEU B 876 N ILE B 797 SHEET 4 AA5 4 LEU B 837 PHE B 840 -1 N GLN B 838 O GLN B 879 CISPEP 1 ASN A 656 PRO A 657 0 2.48 CISPEP 2 ASN B 656 PRO B 657 0 2.72 CRYST1 135.606 62.430 98.505 90.00 90.42 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007374 0.000000 0.000054 0.00000 SCALE2 0.000000 0.016018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010152 0.00000