HEADER TRANSCRIPTION 24-JUN-15 5C7F TITLE CRYSTAL STRUCTURE OF THE RICE TOPLESS RELATED PROTEIN 2 (TPR2) N- TITLE 2 TERMINAL DOMAIN (1-209) IN COMPLEX WITH ARABIDOPSIS IAA1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPR2 PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 1-209); COMPND 5 SYNONYM: OS01G0254100 PROTEIN,PUTATIVE CTV.2,UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: AUXIN-RESPONSIVE PROTEIN IAA1; COMPND 9 CHAIN: E, F, G, H; COMPND 10 FRAGMENT: UNP RESIDUES 10-20; COMPND 11 SYNONYM: INDOLEACETIC ACID-INDUCED PROTEIN 1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: P0705D01.10-1, ASPR2, OS01G0254100, OSJ_01134; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 14 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 15 ORGANISM_TAXID: 3702 KEYWDS TRANSCRIPTIONAL COREPRESSOR, ALPHA-HELICAL STRUCTURE, TETRAMERIC KEYWDS 2 PROTEIN, PLANT TRANSCRIPTIONAL REPRESSION, TRANSCRIPTION, PLANT KEYWDS 3 DEVELOPMENT, AUXIN SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR J.KE,H.MA,X.GU,J.S.BRUNZELLE,H.E.XU,K.MELCHER REVDAT 5 27-SEP-23 5C7F 1 REMARK REVDAT 4 25-DEC-19 5C7F 1 REMARK REVDAT 3 27-SEP-17 5C7F 1 REMARK REVDAT 2 09-DEC-15 5C7F 1 JRNL REVDAT 1 05-AUG-15 5C7F 0 JRNL AUTH J.KE,H.MA,X.GU,A.THELEN,J.S.BRUNZELLE,J.LI,H.E.XU,K.MELCHER JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF DIVERSE TRANSCRIPTIONAL JRNL TITL 2 REPRESSORS BY THE TOPLESS FAMILY OF COREPRESSORS. JRNL REF SCI ADV V. 1 00107 2015 JRNL REFN ESSN 2375-2548 JRNL PMID 26601214 JRNL DOI 10.1126/SCIADV.1500107 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 3072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8685 - 7.5515 0.99 2528 151 0.1574 0.1907 REMARK 3 2 7.5515 - 5.9995 1.00 2557 163 0.2077 0.2194 REMARK 3 3 5.9995 - 5.2428 1.00 2588 128 0.2103 0.2587 REMARK 3 4 5.2428 - 4.7641 1.00 2588 134 0.1825 0.2500 REMARK 3 5 4.7641 - 4.4231 1.00 2599 139 0.1857 0.2114 REMARK 3 6 4.4231 - 4.1625 1.00 2513 153 0.1863 0.2053 REMARK 3 7 4.1625 - 3.9542 1.00 2599 150 0.1919 0.1961 REMARK 3 8 3.9542 - 3.7822 1.00 2589 130 0.2088 0.2510 REMARK 3 9 3.7822 - 3.6367 1.00 2561 127 0.2215 0.2542 REMARK 3 10 3.6367 - 3.5113 1.00 2582 157 0.2439 0.2910 REMARK 3 11 3.5113 - 3.4015 1.00 2592 129 0.2505 0.3127 REMARK 3 12 3.4015 - 3.3044 1.00 2527 162 0.2643 0.2991 REMARK 3 13 3.3044 - 3.2174 1.00 2607 120 0.2829 0.3369 REMARK 3 14 3.2174 - 3.1389 1.00 2626 112 0.2830 0.3753 REMARK 3 15 3.1389 - 3.0676 1.00 2501 156 0.3009 0.3552 REMARK 3 16 3.0676 - 3.0023 1.00 2594 141 0.3001 0.3299 REMARK 3 17 3.0023 - 2.9423 1.00 2593 151 0.2793 0.3102 REMARK 3 18 2.9423 - 2.8868 1.00 2619 125 0.3025 0.2795 REMARK 3 19 2.8868 - 2.8352 1.00 2555 145 0.3219 0.3279 REMARK 3 20 2.8352 - 2.7872 1.00 2540 128 0.3306 0.3325 REMARK 3 21 2.7872 - 2.7422 1.00 2625 135 0.3516 0.4287 REMARK 3 22 2.7422 - 2.7000 1.00 2541 136 0.3748 0.4239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6963 REMARK 3 ANGLE : 1.299 9341 REMARK 3 CHIRALITY : 0.059 1038 REMARK 3 PLANARITY : 0.006 1176 REMARK 3 DIHEDRAL : 16.563 2627 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZHE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG 3,350, 0.2 M NACL, 0.1 M REMARK 280 BIS-TRIS PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.64200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 186 REMARK 465 LYS A 187 REMARK 465 ASN A 188 REMARK 465 PRO A 189 REMARK 465 ARG A 190 REMARK 465 PRO A 191 REMARK 465 ASN A 192 REMARK 465 PRO A 193 REMARK 465 ASP A 194 REMARK 465 PRO A 206 REMARK 465 PRO A 207 REMARK 465 ASN A 208 REMARK 465 GLY A 209 REMARK 465 ARG B 190 REMARK 465 PRO B 191 REMARK 465 ASN B 192 REMARK 465 PRO B 193 REMARK 465 ASP B 194 REMARK 465 THR B 205 REMARK 465 PRO B 206 REMARK 465 PRO B 207 REMARK 465 ASN B 208 REMARK 465 GLY B 209 REMARK 465 ASN C 188 REMARK 465 PRO C 189 REMARK 465 ARG C 190 REMARK 465 PRO C 191 REMARK 465 ASN C 192 REMARK 465 PRO C 193 REMARK 465 ASP C 194 REMARK 465 THR C 205 REMARK 465 PRO C 206 REMARK 465 PRO C 207 REMARK 465 ASN C 208 REMARK 465 GLY C 209 REMARK 465 ARG D 190 REMARK 465 PRO D 191 REMARK 465 ASN D 192 REMARK 465 PRO D 193 REMARK 465 THR D 205 REMARK 465 PRO D 206 REMARK 465 PRO D 207 REMARK 465 ASN D 208 REMARK 465 GLY D 209 REMARK 465 LYS E 10 REMARK 465 ASP E 11 REMARK 465 LYS F 10 REMARK 465 ASP F 11 REMARK 465 THR F 12 REMARK 465 LYS G 10 REMARK 465 PRO G 19 REMARK 465 GLY G 20 REMARK 465 LYS H 10 REMARK 465 ASP H 11 REMARK 465 THR H 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 195 CG1 CG2 CD1 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 THR A 205 OG1 CG2 REMARK 470 MET B 1 CG SD CE REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 ARG B 67 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 ASN B 188 CG OD1 ND2 REMARK 470 ILE B 195 CG1 CG2 CD1 REMARK 470 HIS B 202 CG ND1 CD2 CE1 NE2 REMARK 470 MET C 1 CG SD CE REMARK 470 LEU C 185 CG CD1 CD2 REMARK 470 ILE C 195 CG1 CG2 CD1 REMARK 470 ARG D 67 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 111 CG CD1 CD2 REMARK 470 LYS D 132 CG CD CE NZ REMARK 470 ARG D 158 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 187 CG CD CE NZ REMARK 470 ASN D 188 CG OD1 ND2 REMARK 470 GLU G 13 CG CD OE1 OE2 REMARK 470 GLU H 13 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS D 204 CB CYS D 204 SG -0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU E 14 CB - CG - CD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 PRO H 19 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 196 -62.54 -94.45 REMARK 500 GLU C 159 18.43 59.45 REMARK 500 PRO E 19 -65.33 -96.37 REMARK 500 LEU H 18 63.72 -119.12 REMARK 500 PRO H 19 -164.72 -113.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU F 18 PRO F 19 -31.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 NE2 REMARK 620 2 HIS A 202 ND1 70.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 183 ND1 REMARK 620 2 CYS D 186 SG 127.0 REMARK 620 3 HIS D 202 NE2 82.7 112.1 REMARK 620 4 CYS D 204 SG 99.1 129.1 91.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZHE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SEMET SUBSTITUTED TOPLESS RELATED PROTEIN REMARK 900 2 (TPR2) N-TERMINAL DOMAIN (1-209) FROM RICE REMARK 900 RELATED ID: 5C7E RELATED DB: PDB REMARK 900 RELATED ID: 5C6Q RELATED DB: PDB REMARK 900 RELATED ID: 5C6R RELATED DB: PDB DBREF 5C7F A 1 209 UNP Q5NBT9 Q5NBT9_ORYSJ 1 209 DBREF 5C7F B 1 209 UNP Q5NBT9 Q5NBT9_ORYSJ 1 209 DBREF 5C7F C 1 209 UNP Q5NBT9 Q5NBT9_ORYSJ 1 209 DBREF 5C7F D 1 209 UNP Q5NBT9 Q5NBT9_ORYSJ 1 209 DBREF 5C7F E 10 20 UNP P49677 IAA1_ARATH 10 20 DBREF 5C7F F 10 20 UNP P49677 IAA1_ARATH 10 20 DBREF 5C7F G 10 20 UNP P49677 IAA1_ARATH 10 20 DBREF 5C7F H 10 20 UNP P49677 IAA1_ARATH 10 20 SEQRES 1 A 209 MET SER SER LEU SER ARG GLU LEU VAL PHE LEU ILE LEU SEQRES 2 A 209 GLN PHE LEU ASP GLU GLU LYS PHE LYS GLU THR VAL HIS SEQRES 3 A 209 LYS LEU GLU GLN GLU SER GLY PHE PHE PHE ASN MET LYS SEQRES 4 A 209 TYR PHE GLU GLU LYS VAL HIS ALA GLY GLU TRP ASP GLU SEQRES 5 A 209 VAL GLU LYS TYR LEU SER GLY PHE THR LYS VAL ASP ASP SEQRES 6 A 209 ASN ARG TYR SER MET LYS ILE PHE PHE GLU ILE ARG LYS SEQRES 7 A 209 GLN LYS TYR LEU GLU ALA LEU ASP ARG HIS ASP ARG ALA SEQRES 8 A 209 LYS ALA VAL ASP ILE LEU VAL LYS ASP LEU LYS VAL PHE SEQRES 9 A 209 SER THR PHE ASN GLU GLU LEU TYR LYS GLU ILE THR GLN SEQRES 10 A 209 LEU LEU THR LEU GLU ASN PHE ARG GLU ASN GLU GLN LEU SEQRES 11 A 209 SER LYS TYR GLY ASP THR LYS SER ALA ARG SER ILE MET SEQRES 12 A 209 LEU ILE GLU LEU LYS LYS LEU ILE GLU ALA ASN PRO LEU SEQRES 13 A 209 PHE ARG GLU LYS LEU VAL PHE PRO THR LEU LYS ALA SER SEQRES 14 A 209 ARG LEU ARG THR LEU ILE ASN GLN SER LEU ASN TRP GLN SEQRES 15 A 209 HIS GLN LEU CYS LYS ASN PRO ARG PRO ASN PRO ASP ILE SEQRES 16 A 209 LYS THR LEU PHE THR ASP HIS THR CYS THR PRO PRO ASN SEQRES 17 A 209 GLY SEQRES 1 B 209 MET SER SER LEU SER ARG GLU LEU VAL PHE LEU ILE LEU SEQRES 2 B 209 GLN PHE LEU ASP GLU GLU LYS PHE LYS GLU THR VAL HIS SEQRES 3 B 209 LYS LEU GLU GLN GLU SER GLY PHE PHE PHE ASN MET LYS SEQRES 4 B 209 TYR PHE GLU GLU LYS VAL HIS ALA GLY GLU TRP ASP GLU SEQRES 5 B 209 VAL GLU LYS TYR LEU SER GLY PHE THR LYS VAL ASP ASP SEQRES 6 B 209 ASN ARG TYR SER MET LYS ILE PHE PHE GLU ILE ARG LYS SEQRES 7 B 209 GLN LYS TYR LEU GLU ALA LEU ASP ARG HIS ASP ARG ALA SEQRES 8 B 209 LYS ALA VAL ASP ILE LEU VAL LYS ASP LEU LYS VAL PHE SEQRES 9 B 209 SER THR PHE ASN GLU GLU LEU TYR LYS GLU ILE THR GLN SEQRES 10 B 209 LEU LEU THR LEU GLU ASN PHE ARG GLU ASN GLU GLN LEU SEQRES 11 B 209 SER LYS TYR GLY ASP THR LYS SER ALA ARG SER ILE MET SEQRES 12 B 209 LEU ILE GLU LEU LYS LYS LEU ILE GLU ALA ASN PRO LEU SEQRES 13 B 209 PHE ARG GLU LYS LEU VAL PHE PRO THR LEU LYS ALA SER SEQRES 14 B 209 ARG LEU ARG THR LEU ILE ASN GLN SER LEU ASN TRP GLN SEQRES 15 B 209 HIS GLN LEU CYS LYS ASN PRO ARG PRO ASN PRO ASP ILE SEQRES 16 B 209 LYS THR LEU PHE THR ASP HIS THR CYS THR PRO PRO ASN SEQRES 17 B 209 GLY SEQRES 1 C 209 MET SER SER LEU SER ARG GLU LEU VAL PHE LEU ILE LEU SEQRES 2 C 209 GLN PHE LEU ASP GLU GLU LYS PHE LYS GLU THR VAL HIS SEQRES 3 C 209 LYS LEU GLU GLN GLU SER GLY PHE PHE PHE ASN MET LYS SEQRES 4 C 209 TYR PHE GLU GLU LYS VAL HIS ALA GLY GLU TRP ASP GLU SEQRES 5 C 209 VAL GLU LYS TYR LEU SER GLY PHE THR LYS VAL ASP ASP SEQRES 6 C 209 ASN ARG TYR SER MET LYS ILE PHE PHE GLU ILE ARG LYS SEQRES 7 C 209 GLN LYS TYR LEU GLU ALA LEU ASP ARG HIS ASP ARG ALA SEQRES 8 C 209 LYS ALA VAL ASP ILE LEU VAL LYS ASP LEU LYS VAL PHE SEQRES 9 C 209 SER THR PHE ASN GLU GLU LEU TYR LYS GLU ILE THR GLN SEQRES 10 C 209 LEU LEU THR LEU GLU ASN PHE ARG GLU ASN GLU GLN LEU SEQRES 11 C 209 SER LYS TYR GLY ASP THR LYS SER ALA ARG SER ILE MET SEQRES 12 C 209 LEU ILE GLU LEU LYS LYS LEU ILE GLU ALA ASN PRO LEU SEQRES 13 C 209 PHE ARG GLU LYS LEU VAL PHE PRO THR LEU LYS ALA SER SEQRES 14 C 209 ARG LEU ARG THR LEU ILE ASN GLN SER LEU ASN TRP GLN SEQRES 15 C 209 HIS GLN LEU CYS LYS ASN PRO ARG PRO ASN PRO ASP ILE SEQRES 16 C 209 LYS THR LEU PHE THR ASP HIS THR CYS THR PRO PRO ASN SEQRES 17 C 209 GLY SEQRES 1 D 209 MET SER SER LEU SER ARG GLU LEU VAL PHE LEU ILE LEU SEQRES 2 D 209 GLN PHE LEU ASP GLU GLU LYS PHE LYS GLU THR VAL HIS SEQRES 3 D 209 LYS LEU GLU GLN GLU SER GLY PHE PHE PHE ASN MET LYS SEQRES 4 D 209 TYR PHE GLU GLU LYS VAL HIS ALA GLY GLU TRP ASP GLU SEQRES 5 D 209 VAL GLU LYS TYR LEU SER GLY PHE THR LYS VAL ASP ASP SEQRES 6 D 209 ASN ARG TYR SER MET LYS ILE PHE PHE GLU ILE ARG LYS SEQRES 7 D 209 GLN LYS TYR LEU GLU ALA LEU ASP ARG HIS ASP ARG ALA SEQRES 8 D 209 LYS ALA VAL ASP ILE LEU VAL LYS ASP LEU LYS VAL PHE SEQRES 9 D 209 SER THR PHE ASN GLU GLU LEU TYR LYS GLU ILE THR GLN SEQRES 10 D 209 LEU LEU THR LEU GLU ASN PHE ARG GLU ASN GLU GLN LEU SEQRES 11 D 209 SER LYS TYR GLY ASP THR LYS SER ALA ARG SER ILE MET SEQRES 12 D 209 LEU ILE GLU LEU LYS LYS LEU ILE GLU ALA ASN PRO LEU SEQRES 13 D 209 PHE ARG GLU LYS LEU VAL PHE PRO THR LEU LYS ALA SER SEQRES 14 D 209 ARG LEU ARG THR LEU ILE ASN GLN SER LEU ASN TRP GLN SEQRES 15 D 209 HIS GLN LEU CYS LYS ASN PRO ARG PRO ASN PRO ASP ILE SEQRES 16 D 209 LYS THR LEU PHE THR ASP HIS THR CYS THR PRO PRO ASN SEQRES 17 D 209 GLY SEQRES 1 E 11 LYS ASP THR GLU LEU ARG LEU GLY LEU PRO GLY SEQRES 1 F 11 LYS ASP THR GLU LEU ARG LEU GLY LEU PRO GLY SEQRES 1 G 11 LYS ASP THR GLU LEU ARG LEU GLY LEU PRO GLY SEQRES 1 H 11 LYS ASP THR GLU LEU ARG LEU GLY LEU PRO GLY HET ZN A 401 1 HET ZN D 401 1 HETNAM ZN ZINC ION FORMUL 9 ZN 2(ZN 2+) HELIX 1 AA1 SER A 2 GLU A 19 1 18 HELIX 2 AA2 PHE A 21 GLY A 33 1 13 HELIX 3 AA3 ASN A 37 ALA A 47 1 11 HELIX 4 AA4 GLU A 49 SER A 58 1 10 HELIX 5 AA5 ASN A 66 ARG A 87 1 22 HELIX 6 AA6 ASP A 89 ASP A 100 1 12 HELIX 7 AA7 LEU A 101 THR A 106 5 6 HELIX 8 AA8 ASN A 108 GLN A 117 1 10 HELIX 9 AA9 LEU A 118 LEU A 121 5 4 HELIX 10 AB1 ASN A 123 ASN A 127 5 5 HELIX 11 AB2 ASP A 135 ASN A 154 1 20 HELIX 12 AB3 SER A 169 GLN A 184 1 16 HELIX 13 AB4 SER B 2 GLU B 19 1 18 HELIX 14 AB5 PHE B 21 GLY B 33 1 13 HELIX 15 AB6 ASN B 37 ALA B 47 1 11 HELIX 16 AB7 GLU B 49 SER B 58 1 10 HELIX 17 AB8 ASN B 66 ARG B 87 1 22 HELIX 18 AB9 ASP B 89 ASP B 100 1 12 HELIX 19 AC1 LEU B 101 SER B 105 5 5 HELIX 20 AC2 ASN B 108 GLN B 117 1 10 HELIX 21 AC3 LEU B 118 LEU B 121 5 4 HELIX 22 AC4 ASN B 123 ASN B 127 5 5 HELIX 23 AC5 ASP B 135 ASN B 154 1 20 HELIX 24 AC6 SER B 169 GLN B 184 1 16 HELIX 25 AC7 SER C 2 GLU C 19 1 18 HELIX 26 AC8 PHE C 21 GLY C 33 1 13 HELIX 27 AC9 ASN C 37 ALA C 47 1 11 HELIX 28 AD1 GLU C 49 SER C 58 1 10 HELIX 29 AD2 ASN C 66 ARG C 87 1 22 HELIX 30 AD3 ASP C 89 ASP C 100 1 12 HELIX 31 AD4 LEU C 101 SER C 105 5 5 HELIX 32 AD5 ASN C 108 GLN C 117 1 10 HELIX 33 AD6 LEU C 118 LEU C 121 5 4 HELIX 34 AD7 ASN C 123 SER C 131 5 9 HELIX 35 AD8 ASP C 135 ASN C 154 1 20 HELIX 36 AD9 PRO C 155 ARG C 158 5 4 HELIX 37 AE1 SER C 169 LEU C 185 1 17 HELIX 38 AE2 SER D 2 GLU D 19 1 18 HELIX 39 AE3 PHE D 21 GLY D 33 1 13 HELIX 40 AE4 ASN D 37 ALA D 47 1 11 HELIX 41 AE5 GLU D 49 SER D 58 1 10 HELIX 42 AE6 ASN D 66 ARG D 87 1 22 HELIX 43 AE7 ASP D 89 ASP D 100 1 12 HELIX 44 AE8 LEU D 101 SER D 105 5 5 HELIX 45 AE9 ASN D 108 GLN D 117 1 10 HELIX 46 AF1 LEU D 118 LEU D 121 5 4 HELIX 47 AF2 ASN D 123 ASN D 127 5 5 HELIX 48 AF3 ASP D 135 ASN D 154 1 20 HELIX 49 AF4 SER D 169 GLN D 184 1 16 LINK NE2 HIS A 183 ZN ZN A 401 1555 1555 2.32 LINK ND1 HIS A 202 ZN ZN A 401 1555 1555 2.34 LINK ND1 HIS D 183 ZN ZN D 401 1555 1555 2.19 LINK SG CYS D 186 ZN ZN D 401 1555 1555 2.30 LINK NE2 HIS D 202 ZN ZN D 401 1555 1555 2.18 LINK SG CYS D 204 ZN ZN D 401 1555 1555 2.04 CISPEP 1 GLN A 184 LEU A 185 0 -9.86 CISPEP 2 LYS B 187 ASN B 188 0 0.45 CISPEP 3 CYS C 186 LYS C 187 0 -0.28 CISPEP 4 LEU E 18 PRO E 19 0 -25.23 CISPEP 5 GLU G 13 LEU G 14 0 2.77 SITE 1 AC1 2 HIS A 183 HIS A 202 SITE 1 AC2 5 HIS D 183 CYS D 186 HIS D 202 THR D 203 SITE 2 AC2 5 CYS D 204 CRYST1 58.509 129.284 79.171 90.00 110.11 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017091 0.000000 0.006258 0.00000 SCALE2 0.000000 0.007735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013451 0.00000