HEADER PROTEIN BINDING 24-JUN-15 5C7G TITLE CRYSTAL STRUCTURE OF THE B1 DOMAIN OF HUMAN NEUROPILIN-1 IN COMPLEX TITLE 2 WITH A BICINE MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROPILIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B1 DOMAIN, UNP RESIDUES 273-427; COMPND 5 SYNONYM: VASCULAR ENDOTHELIAL CELL GROWTH FACTOR 165 RECEPTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NRP1, NRP, VEGF165R; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NEUROPILIN-1, HUMAN, BLOOD COAGULATION FACTORS, CELL ADHESION, KEYWDS 2 BINDING SITES, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.DIDIERJEAN,C.JELSCH REVDAT 3 09-OCT-24 5C7G 1 REMARK REVDAT 2 10-JAN-24 5C7G 1 LINK ATOM REVDAT 1 06-JUL-16 5C7G 0 JRNL AUTH M.RICHARD,N.PELLIGRINI MOISE,C.JELSCH,B.MAIGRET, JRNL AUTH 2 C.DIDIERJEAN,X.MANIVAL,C.CHARRON JRNL TITL DESIGN, SYNTHESIS AND BIOLOGICAL EVALUATION OF NEW JRNL TITL 2 PEPTIDOMIMETIC COMPOUNDS TARGETING NRP-1 RECEPTOR TO BE JRNL TITL 3 PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2840 - 3.4929 1.00 2228 155 0.1267 0.1535 REMARK 3 2 3.4929 - 2.7731 1.00 2106 148 0.1341 0.1867 REMARK 3 3 2.7731 - 2.4227 1.00 2067 145 0.1397 0.1598 REMARK 3 4 2.4227 - 2.2013 0.99 2022 142 0.1352 0.1657 REMARK 3 5 2.2013 - 2.0436 0.99 2017 141 0.1404 0.1645 REMARK 3 6 2.0436 - 1.9231 0.99 2003 141 0.1495 0.1851 REMARK 3 7 1.9231 - 1.8268 0.99 2019 141 0.1589 0.1742 REMARK 3 8 1.8268 - 1.7473 0.99 2024 142 0.1501 0.1750 REMARK 3 9 1.7473 - 1.6800 1.00 1995 140 0.1663 0.1903 REMARK 3 10 1.6800 - 1.6221 1.00 2028 143 0.1601 0.1962 REMARK 3 11 1.6221 - 1.5714 1.00 2010 141 0.1753 0.2102 REMARK 3 12 1.5714 - 1.5264 1.00 1998 140 0.1871 0.2159 REMARK 3 13 1.5264 - 1.4863 1.00 1995 140 0.1928 0.2308 REMARK 3 14 1.4863 - 1.4500 1.00 1996 140 0.1877 0.1935 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1270 REMARK 3 ANGLE : 1.267 1720 REMARK 3 CHIRALITY : 0.077 187 REMARK 3 PLANARITY : 0.007 218 REMARK 3 DIHEDRAL : 17.662 471 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.1908 15.4740 20.3132 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.1125 REMARK 3 T33: 0.1138 T12: 0.0019 REMARK 3 T13: -0.0179 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.0458 L22: 2.5691 REMARK 3 L33: 1.2908 L12: 0.0941 REMARK 3 L13: 0.1454 L23: 0.7228 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.1036 S13: 0.0285 REMARK 3 S21: 0.1750 S22: -0.0239 S23: 0.0064 REMARK 3 S31: 0.0551 S32: 0.0258 S33: 0.0105 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97967 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30515 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 39.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1KEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG550 MME 5%, PEG 20 000, 60MM REMARK 280 MGCL2, NA-BICINE 100 MM, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.98000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.14000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.49000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.14000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.47000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.14000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.14000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.49000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.14000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.14000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.47000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 530 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 1 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ASN A 104 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 490 O HOH A 524 2.04 REMARK 500 O HOH A 490 O HOH A 494 2.12 REMARK 500 O HOH A 368 O HOH A 471 2.14 REMARK 500 O HOH A 427 O HOH A 477 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 4 44.03 -143.14 REMARK 500 ASN A 41 -144.65 62.10 REMARK 500 THR A 141 -37.52 68.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 572 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 573 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 574 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 575 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 576 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 577 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 578 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 579 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 580 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 581 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 582 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH A 583 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH A 584 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A 585 DISTANCE = 17.93 ANGSTROMS REMARK 525 HOH A 586 DISTANCE = 21.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BCN A 201 O6 REMARK 620 2 HOH A 331 O 86.3 REMARK 620 3 HOH A 365 O 88.1 174.3 REMARK 620 4 HOH A 396 O 89.6 91.7 87.6 REMARK 620 5 HOH A 432 O 90.3 90.0 90.8 178.3 REMARK 620 6 HOH A 496 O 179.0 94.4 91.2 91.0 89.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KEX RELATED DB: PDB DBREF 5C7G A 1 155 UNP O14786 NRP1_HUMAN 273 427 SEQADV 5C7G HIS A -5 UNP O14786 EXPRESSION TAG SEQADV 5C7G HIS A -4 UNP O14786 EXPRESSION TAG SEQADV 5C7G HIS A -3 UNP O14786 EXPRESSION TAG SEQADV 5C7G HIS A -2 UNP O14786 EXPRESSION TAG SEQADV 5C7G HIS A -1 UNP O14786 EXPRESSION TAG SEQADV 5C7G HIS A 0 UNP O14786 EXPRESSION TAG SEQRES 1 A 161 HIS HIS HIS HIS HIS HIS PHE LYS CYS MET GLU ALA LEU SEQRES 2 A 161 GLY MET GLU SER GLY GLU ILE HIS SER ASP GLN ILE THR SEQRES 3 A 161 ALA SER SER GLN TYR SER THR ASN TRP SER ALA GLU ARG SEQRES 4 A 161 SER ARG LEU ASN TYR PRO GLU ASN GLY TRP THR PRO GLY SEQRES 5 A 161 GLU ASP SER TYR ARG GLU TRP ILE GLN VAL ASP LEU GLY SEQRES 6 A 161 LEU LEU ARG PHE VAL THR ALA VAL GLY THR GLN GLY ALA SEQRES 7 A 161 ILE SER LYS GLU THR LYS LYS LYS TYR TYR VAL LYS THR SEQRES 8 A 161 TYR LYS ILE ASP VAL SER SER ASN GLY GLU ASP TRP ILE SEQRES 9 A 161 THR ILE LYS GLU GLY ASN LYS PRO VAL LEU PHE GLN GLY SEQRES 10 A 161 ASN THR ASN PRO THR ASP VAL VAL VAL ALA VAL PHE PRO SEQRES 11 A 161 LYS PRO LEU ILE THR ARG PHE VAL ARG ILE LYS PRO ALA SEQRES 12 A 161 THR TRP GLU THR GLY ILE SER MET ARG PHE GLU VAL TYR SEQRES 13 A 161 GLY CYS LYS ILE THR HET BCN A 201 23 HET NA A 202 1 HETNAM BCN BICINE HETNAM NA SODIUM ION FORMUL 2 BCN C6 H13 N O4 FORMUL 3 NA NA 1+ FORMUL 4 HOH *286(H2 O) HELIX 1 1 SER A 16 GLN A 18 5 3 HELIX 2 2 THR A 27 TRP A 29 5 3 HELIX 3 3 ALA A 31 SER A 34 5 4 SHEET 1 A 4 ILE A 19 ALA A 21 0 SHEET 2 A 4 ILE A 54 ASP A 57 -1 SHEET 3 A 4 PHE A 131 PRO A 136 -1 SHEET 4 A 4 TYR A 86 SER A 91 -1 SHEET 1 B 3 LEU A 127 THR A 129 0 SHEET 2 B 3 ARG A 62 GLN A 70 -1 SHEET 3 B 3 ARG A 146 CYS A 152 -1 SHEET 1 C 2 ALA A 66 THR A 69 0 SHEET 2 C 2 VAL A 119 VAL A 122 -1 SHEET 1 D 2 TYR A 82 THR A 85 0 SHEET 2 D 2 THR A 138 GLU A 140 -1 SSBOND 1 CYS A 3 CYS A 152 1555 1555 2.05 LINK O6 BCN A 201 NA NA A 202 1555 1555 2.13 LINK NA NA A 202 O HOH A 331 1555 1555 2.07 LINK NA NA A 202 O HOH A 365 1555 1555 2.11 LINK NA NA A 202 O HOH A 396 1555 1555 2.13 LINK NA NA A 202 O HOH A 432 1555 1555 2.10 LINK NA NA A 202 O HOH A 496 1555 1555 2.13 SITE 1 AC1 15 GLN A 18 TYR A 25 TRP A 29 ASP A 57 SITE 2 AC1 15 SER A 74 THR A 77 TYR A 81 ARG A 130 SITE 3 AC1 15 NA A 202 HOH A 331 HOH A 339 HOH A 365 SITE 4 AC1 15 HOH A 386 HOH A 396 HOH A 432 SITE 1 AC2 6 BCN A 201 HOH A 331 HOH A 365 HOH A 396 SITE 2 AC2 6 HOH A 432 HOH A 496 CRYST1 62.280 62.280 85.960 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011633 0.00000