HEADER TRANSCRIPTIONAL REGULATOR 25-JUN-15 5C8F TITLE CRYSTAL STRUCTURE OF LIGHT-EXPOSED FULL-LENGTH THERMUS THERMOPHILUS TITLE 2 CARH BOUND TO COBALAMIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT-DEPENDENT TRANSCRIPTIONAL REGULATOR CARH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- SOURCE 3 163 / DSM 7039); SOURCE 4 ORGANISM_TAXID: 262724; SOURCE 5 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 6 GENE: TT_P0056; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 STAR PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSCRIPTION FACTOR, LIGHT SENSOR, ADENOSYLCOBALAMIN-BINDING, DNA- KEYWDS 2 BINDING, TRANSCRIPTION, TRANSCRIPTIONAL REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR M.JOST,C.L.DRENNAN REVDAT 7 27-SEP-23 5C8F 1 REMARK REVDAT 6 20-NOV-19 5C8F 1 REMARK REVDAT 5 01-NOV-17 5C8F 1 REMARK REVDAT 4 20-SEP-17 5C8F 1 JRNL REMARK REVDAT 3 04-NOV-15 5C8F 1 JRNL REVDAT 2 14-OCT-15 5C8F 1 JRNL REVDAT 1 30-SEP-15 5C8F 0 JRNL AUTH M.JOST,J.FERNANDEZ-ZAPATA,M.C.POLANCO,J.M.ORTIZ-GUERRERO, JRNL AUTH 2 P.Y.CHEN,G.KANG,S.PADMANABHAN,M.ELIAS-ARNANZ,C.L.DRENNAN JRNL TITL STRUCTURAL BASIS FOR GENE REGULATION BY A B12-DEPENDENT JRNL TITL 2 PHOTORECEPTOR. JRNL REF NATURE V. 526 536 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26416754 JRNL DOI 10.1038/NATURE14950 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 89.7904 - 4.8154 1.00 3024 140 0.1585 0.1799 REMARK 3 2 4.8154 - 3.8221 1.00 2859 158 0.1433 0.1682 REMARK 3 3 3.8221 - 3.3390 1.00 2853 139 0.1712 0.2038 REMARK 3 4 3.3390 - 3.0337 1.00 2825 162 0.2129 0.2646 REMARK 3 5 3.0337 - 2.8162 1.00 2795 152 0.2528 0.3200 REMARK 3 6 2.8162 - 2.6502 1.00 2809 145 0.3026 0.3474 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2248 REMARK 3 ANGLE : 0.729 3071 REMARK 3 CHIRALITY : 0.030 335 REMARK 3 PLANARITY : 0.004 421 REMARK 3 DIHEDRAL : 10.559 872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7860 4.4298 -52.9519 REMARK 3 T TENSOR REMARK 3 T11: 0.7864 T22: 0.5907 REMARK 3 T33: 0.5711 T12: -0.1881 REMARK 3 T13: -0.0764 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.5618 L22: 3.3027 REMARK 3 L33: 1.8068 L12: -0.7518 REMARK 3 L13: 0.3808 L23: -0.7090 REMARK 3 S TENSOR REMARK 3 S11: -0.1032 S12: -0.2439 S13: 0.1441 REMARK 3 S21: 0.8324 S22: -0.1536 S23: -0.3836 REMARK 3 S31: -0.2414 S32: 0.1617 S33: 0.2719 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JML REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.4 M NACL, 0.1 M BIS-TRIS PH 6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 63.45500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.76500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.38250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.45500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.14750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 112.14750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.45500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.38250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 63.45500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.76500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.45500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.76500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.45500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 112.14750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 37.38250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.45500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 37.38250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 112.14750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.45500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.45500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER ASSEMBLY HAS BEEN VERIFIED BY SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY AND ANALYTICAL ULTRACENTRIFUGATION. IMPORTANTLY, REMARK 300 ONLY THIS PARTICULAR FORM OF THE CARH PROTEIN (LIGHT-EXPOSED CARH) REMARK 300 IS MONOMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -149.53000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -149.53000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 279 REMARK 465 PRO A 280 REMARK 465 GLU A 281 REMARK 465 LYS A 282 REMARK 465 GLU A 283 REMARK 465 ALA A 284 REMARK 465 ILE A 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 79 NE CZ NH1 NH2 REMARK 470 ARG A 230 CD NE CZ NH1 NH2 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 ASP A 239 CG OD1 OD2 REMARK 470 GLU A 254 CD OE1 OE2 REMARK 470 ARG A 257 NE CZ NH1 NH2 REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 75 -43.52 -153.82 REMARK 500 LEU A 119 -72.27 -110.41 REMARK 500 PRO A 194 73.08 -68.02 REMARK 500 ASP A 239 53.66 -102.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 B12 A 301 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 132 NE2 REMARK 620 2 B12 A 301 N21 99.4 REMARK 620 3 B12 A 301 N22 95.7 90.4 REMARK 620 4 B12 A 301 N23 92.3 165.7 96.6 REMARK 620 5 B12 A 301 N24 77.6 84.3 170.7 90.2 REMARK 620 6 HIS A 177 NE2 169.2 86.5 93.3 80.7 94.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B12 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C8A RELATED DB: PDB REMARK 900 RELATED ID: 5C8E RELATED DB: PDB REMARK 900 RELATED ID: 5C8D RELATED DB: PDB DBREF 5C8F A 1 285 UNP Q746J7 Q746J7_THET2 1 285 SEQADV 5C8F MET A -19 UNP Q746J7 INITIATING METHIONINE SEQADV 5C8F GLY A -18 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F SER A -17 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F SER A -16 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F HIS A -15 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F HIS A -14 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F HIS A -13 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F HIS A -12 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F HIS A -11 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F HIS A -10 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F SER A -9 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F SER A -8 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F GLY A -7 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F LEU A -6 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F VAL A -5 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F PRO A -4 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F ARG A -3 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F GLY A -2 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F SER A -1 UNP Q746J7 EXPRESSION TAG SEQADV 5C8F HIS A 0 UNP Q746J7 EXPRESSION TAG SEQRES 1 A 305 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 305 LEU VAL PRO ARG GLY SER HIS MET THR SER SER GLY VAL SEQRES 3 A 305 TYR THR ILE ALA GLU VAL GLU ALA MET THR GLY LEU SER SEQRES 4 A 305 ALA GLU VAL LEU ARG GLN TRP GLU ARG ARG TYR GLY PHE SEQRES 5 A 305 PRO LYS PRO ARG ARG THR PRO GLY GLY HIS ARG LEU TYR SEQRES 6 A 305 SER ALA GLU ASP VAL GLU ALA LEU LYS THR ILE LYS ARG SEQRES 7 A 305 TRP LEU GLU GLU GLY ALA THR PRO LYS ALA ALA ILE ARG SEQRES 8 A 305 ARG TYR LEU ALA GLN GLU VAL ARG PRO GLU ASP LEU GLY SEQRES 9 A 305 THR GLY LEU LEU GLU ALA LEU LEU ARG GLY ASP LEU ALA SEQRES 10 A 305 GLY ALA GLU ALA LEU PHE ARG ARG GLY LEU ARG PHE TRP SEQRES 11 A 305 GLY PRO GLU GLY VAL LEU GLU HIS LEU LEU LEU PRO VAL SEQRES 12 A 305 LEU ARG GLU VAL GLY GLU ALA TRP HIS ARG GLY GLU ILE SEQRES 13 A 305 GLY VAL ALA GLU GLU HIS LEU ALA SER THR PHE LEU ARG SEQRES 14 A 305 ALA ARG LEU GLN GLU LEU LEU ASP LEU ALA GLY PHE PRO SEQRES 15 A 305 PRO GLY PRO PRO VAL LEU VAL THR THR PRO PRO GLY GLU SEQRES 16 A 305 ARG HIS GLU ILE GLY ALA MET LEU ALA ALA TYR HIS LEU SEQRES 17 A 305 ARG ARG LYS GLY VAL PRO ALA LEU TYR LEU GLY PRO ASP SEQRES 18 A 305 THR PRO LEU PRO ASP LEU ARG ALA LEU ALA ARG ARG LEU SEQRES 19 A 305 GLY ALA GLY ALA VAL VAL LEU SER ALA VAL LEU SER GLU SEQRES 20 A 305 PRO LEU ARG ALA LEU PRO ASP GLY ALA LEU LYS ASP LEU SEQRES 21 A 305 ALA PRO ARG VAL PHE LEU GLY GLY GLN GLY ALA GLY PRO SEQRES 22 A 305 GLU GLU ALA ARG ARG LEU GLY ALA GLU TYR MET GLU ASP SEQRES 23 A 305 LEU LYS GLY LEU ALA GLU ALA LEU TRP LEU PRO ARG GLY SEQRES 24 A 305 PRO GLU LYS GLU ALA ILE HET B12 A 301 91 HET CL A 302 1 HET CL A 303 1 HET GOL A 304 6 HETNAM B12 COBALAMIN HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 B12 C62 H89 CO N13 O14 P 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *19(H2 O) HELIX 1 AA1 THR A 8 GLY A 17 1 10 HELIX 2 AA2 SER A 19 GLY A 31 1 13 HELIX 3 AA3 ALA A 47 GLU A 62 1 16 HELIX 4 AA4 THR A 65 ALA A 75 1 11 HELIX 5 AA5 ARG A 79 GLU A 81 5 3 HELIX 6 AA6 ASP A 82 GLY A 94 1 13 HELIX 7 AA7 ASP A 95 TRP A 110 1 16 HELIX 8 AA8 GLY A 111 LEU A 119 1 9 HELIX 9 AA9 LEU A 119 ARG A 133 1 15 HELIX 10 AB1 GLY A 137 ALA A 159 1 23 HELIX 11 AB2 GLU A 178 LYS A 191 1 14 HELIX 12 AB3 PRO A 203 GLY A 215 1 13 HELIX 13 AB4 SER A 226 LEU A 232 1 7 HELIX 14 AB5 GLY A 252 GLY A 260 1 9 HELIX 15 AB6 ASP A 266 TRP A 275 1 10 SHEET 1 AA1 3 VAL A 6 TYR A 7 0 SHEET 2 AA1 3 ARG A 43 SER A 46 -1 O TYR A 45 N TYR A 7 SHEET 3 AA1 3 ARG A 36 ARG A 37 -1 N ARG A 36 O LEU A 44 SHEET 1 AA2 5 ALA A 195 GLY A 199 0 SHEET 2 AA2 5 VAL A 167 THR A 170 1 N VAL A 167 O LEU A 196 SHEET 3 AA2 5 ALA A 218 SER A 222 1 O VAL A 220 N LEU A 168 SHEET 4 AA2 5 ARG A 243 GLY A 247 1 O PHE A 245 N VAL A 219 SHEET 5 AA2 5 GLU A 262 TYR A 263 1 O GLU A 262 N VAL A 244 LINK NE2 HIS A 132 CO B12 A 301 1555 1555 2.22 LINK NE2 HIS A 177 CO B12 A 301 1555 1555 2.22 CISPEP 1 PHE A 32 PRO A 33 0 -0.65 SITE 1 AC1 21 ARG A 125 GLY A 128 GLU A 129 TRP A 131 SITE 2 AC1 21 HIS A 132 ARG A 176 HIS A 177 GLU A 178 SITE 3 AC1 21 ILE A 179 GLY A 180 ARG A 213 VAL A 220 SITE 4 AC1 21 SER A 222 VAL A 224 LEU A 225 GLY A 247 SITE 5 AC1 21 GLY A 248 GLN A 249 MET A 264 ASP A 266 SITE 6 AC1 21 LEU A 267 SITE 1 AC2 1 ARG A 43 SITE 1 AC3 3 LYS A 67 ALA A 68 ARG A 71 SITE 1 AC4 6 LEU A 143 THR A 146 PHE A 147 ARG A 151 SITE 2 AC4 6 ASP A 157 ARG A 189 CRYST1 126.910 126.910 149.530 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007880 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006688 0.00000