HEADER TRANSFERASE 26-JUN-15 5C93 TITLE HISTIDINE KINASE WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 370-624; COMPND 5 SYNONYM: YYCG; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM 16; SOURCE 3 ORGANISM_TAXID: 1327988; SOURCE 4 GENE: LP16_0032; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTIDINE KINASE, ATP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CAI REVDAT 3 08-NOV-23 5C93 1 REMARK REVDAT 2 25-OCT-17 5C93 1 JRNL REMARK REVDAT 1 27-JUL-16 5C93 0 JRNL AUTH Y.CAI,M.SU,A.AHMAD,X.HU,J.SANG,L.KONG,X.CHEN,C.WANG,J.SHUAI, JRNL AUTH 2 A.HAN JRNL TITL CONFORMATIONAL DYNAMICS OF THE ESSENTIAL SENSOR HISTIDINE JRNL TITL 2 KINASE WALK. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 793 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28994408 JRNL DOI 10.1107/S2059798317013043 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 21072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0148 - 4.8144 0.99 3123 156 0.1882 0.2471 REMARK 3 2 4.8144 - 3.8226 0.96 2879 156 0.1885 0.2254 REMARK 3 3 3.8226 - 3.3398 0.94 2801 156 0.2288 0.3006 REMARK 3 4 3.3398 - 3.0346 1.00 2922 156 0.2512 0.3157 REMARK 3 5 3.0346 - 2.8171 1.00 2941 156 0.2689 0.3285 REMARK 3 6 2.8171 - 2.6511 0.94 2805 103 0.3081 0.3474 REMARK 3 7 2.6511 - 2.5184 0.88 2562 156 0.3306 0.4212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3811 REMARK 3 ANGLE : 0.875 5056 REMARK 3 CHIRALITY : 0.035 566 REMARK 3 PLANARITY : 0.003 648 REMARK 3 DIHEDRAL : 13.036 1408 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 447 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5379 -4.1784 -20.6159 REMARK 3 T TENSOR REMARK 3 T11: 0.5140 T22: 0.4924 REMARK 3 T33: 0.4721 T12: 0.0422 REMARK 3 T13: -0.0329 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 0.2611 L22: 0.4764 REMARK 3 L33: -0.2553 L12: 0.0371 REMARK 3 L13: -0.4686 L23: -0.2490 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: -0.0814 S13: -0.0548 REMARK 3 S21: -0.0092 S22: 0.1509 S23: -0.0117 REMARK 3 S31: 0.1374 S32: -0.0623 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 448 THROUGH 610 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4884 -26.8078 -29.0272 REMARK 3 T TENSOR REMARK 3 T11: 0.3801 T22: 0.3491 REMARK 3 T33: 0.4018 T12: 0.0253 REMARK 3 T13: 0.0653 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.2613 L22: 0.5130 REMARK 3 L33: 0.6719 L12: 0.1747 REMARK 3 L13: 0.0987 L23: -0.5933 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: -0.0175 S13: -0.1785 REMARK 3 S21: -0.0667 S22: 0.1150 S23: 0.0866 REMARK 3 S31: -0.2168 S32: 0.1116 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 383 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9139 -5.2076 -10.2006 REMARK 3 T TENSOR REMARK 3 T11: 0.5149 T22: 0.5303 REMARK 3 T33: 0.4919 T12: 0.0673 REMARK 3 T13: -0.0593 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.0220 L22: 0.3508 REMARK 3 L33: 0.1781 L12: 0.0537 REMARK 3 L13: 0.0740 L23: -0.0244 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: -0.0070 S13: -0.1224 REMARK 3 S21: 0.3709 S22: 0.1752 S23: 0.0070 REMARK 3 S31: 0.6073 S32: -0.0623 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 410 THROUGH 441 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7203 5.7144 -9.4232 REMARK 3 T TENSOR REMARK 3 T11: 0.4880 T22: 0.5666 REMARK 3 T33: 0.4599 T12: -0.0052 REMARK 3 T13: -0.0069 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 0.0292 L22: 0.2125 REMARK 3 L33: -0.0102 L12: -0.0167 REMARK 3 L13: -0.0240 L23: 0.0591 REMARK 3 S TENSOR REMARK 3 S11: -0.2782 S12: 0.0840 S13: -0.0096 REMARK 3 S21: 0.4683 S22: 0.2518 S23: -0.1457 REMARK 3 S31: -0.0886 S32: -0.0478 S33: -0.0034 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 442 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5991 2.4578 -0.8598 REMARK 3 T TENSOR REMARK 3 T11: 0.5033 T22: 0.4462 REMARK 3 T33: 0.4493 T12: 0.0148 REMARK 3 T13: 0.0455 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.1418 L22: 0.2220 REMARK 3 L33: 0.1060 L12: 0.0469 REMARK 3 L13: -0.0175 L23: -0.0748 REMARK 3 S TENSOR REMARK 3 S11: -0.0352 S12: -0.1629 S13: 0.0696 REMARK 3 S21: -0.0731 S22: -0.0268 S23: 0.0043 REMARK 3 S31: -0.0949 S32: 0.0691 S33: -0.0064 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 476 THROUGH 556 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5926 -6.1893 7.5401 REMARK 3 T TENSOR REMARK 3 T11: 0.5850 T22: 0.4020 REMARK 3 T33: 0.4422 T12: -0.0840 REMARK 3 T13: -0.1478 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.4045 L22: 0.1216 REMARK 3 L33: 0.4018 L12: 0.1300 REMARK 3 L13: 0.3265 L23: -0.5078 REMARK 3 S TENSOR REMARK 3 S11: 0.2755 S12: -0.0216 S13: 0.0304 REMARK 3 S21: 0.3004 S22: -0.1208 S23: -0.1932 REMARK 3 S31: -0.0330 S32: -0.1072 S33: 0.0410 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 557 THROUGH 575 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1399 -22.0519 -1.7183 REMARK 3 T TENSOR REMARK 3 T11: 1.2072 T22: 0.7481 REMARK 3 T33: 1.0791 T12: 0.0238 REMARK 3 T13: 0.0501 T23: -0.0808 REMARK 3 L TENSOR REMARK 3 L11: -0.0068 L22: 0.0392 REMARK 3 L33: -0.0054 L12: 0.0424 REMARK 3 L13: -0.0151 L23: 0.0158 REMARK 3 S TENSOR REMARK 3 S11: 0.1658 S12: -0.0398 S13: 0.1372 REMARK 3 S21: -0.2296 S22: 0.4035 S23: -0.1000 REMARK 3 S31: -0.2644 S32: 0.1937 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 576 THROUGH 610 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5946 -8.6471 6.8343 REMARK 3 T TENSOR REMARK 3 T11: 0.7349 T22: 0.5235 REMARK 3 T33: 0.5288 T12: -0.0028 REMARK 3 T13: -0.0611 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.0472 L22: 0.4861 REMARK 3 L33: 0.6168 L12: -0.1568 REMARK 3 L13: 0.1698 L23: -0.5302 REMARK 3 S TENSOR REMARK 3 S11: 0.4493 S12: -0.1461 S13: 0.0646 REMARK 3 S21: -0.2179 S22: -0.2324 S23: -0.1340 REMARK 3 S31: 1.0332 S32: 0.7088 S33: 0.0199 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21206 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4U7O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.32250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.67100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.87850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.67100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.32250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.87850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 370 REMARK 465 ASP A 371 REMARK 465 ARG A 566 REMARK 465 SER A 567 REMARK 465 ARG A 568 REMARK 465 ALA A 569 REMARK 465 PRO A 611 REMARK 465 TYR A 612 REMARK 465 GLU A 613 REMARK 465 GLU A 614 REMARK 465 GLU A 615 REMARK 465 ASP A 616 REMARK 465 LEU A 617 REMARK 465 TRP A 618 REMARK 465 ASP A 619 REMARK 465 ASP A 620 REMARK 465 ASP A 621 REMARK 465 SER A 622 REMARK 465 GLN A 623 REMARK 465 ALA A 624 REMARK 465 HIS B 370 REMARK 465 ASP B 371 REMARK 465 VAL B 372 REMARK 465 THR B 373 REMARK 465 GLU B 374 REMARK 465 GLN B 375 REMARK 465 GLN B 376 REMARK 465 LYS B 377 REMARK 465 ILE B 378 REMARK 465 ASP B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 ARG B 382 REMARK 465 MET B 445 REMARK 465 ASP B 446 REMARK 465 SER B 447 REMARK 465 GLY B 448 REMARK 465 THR B 449 REMARK 465 ARG B 568 REMARK 465 ALA B 569 REMARK 465 PRO B 611 REMARK 465 TYR B 612 REMARK 465 GLU B 613 REMARK 465 GLU B 614 REMARK 465 GLU B 615 REMARK 465 ASP B 616 REMARK 465 LEU B 617 REMARK 465 TRP B 618 REMARK 465 ASP B 619 REMARK 465 ASP B 620 REMARK 465 ASP B 621 REMARK 465 SER B 622 REMARK 465 GLN B 623 REMARK 465 ALA B 624 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 395 O4 SO4 B 702 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 461 OH TYR B 604 4445 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 478 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 ASP A 478 N - CA - C ANGL. DEV. = -39.2 DEGREES REMARK 500 ASN A 479 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 ASN A 479 N - CA - C ANGL. DEV. = -29.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 417 -31.63 -131.41 REMARK 500 HIS A 533 -37.54 -35.74 REMARK 500 VAL B 417 -30.88 -130.92 REMARK 500 SER B 519 65.97 -116.45 REMARK 500 PHE B 559 -2.99 74.61 REMARK 500 TYR B 609 -76.60 -92.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 702 DBREF 5C93 A 370 624 UNP R9WYL1 R9WYL1_LACPN 370 624 DBREF 5C93 B 370 624 UNP R9WYL1 R9WYL1_LACPN 370 624 SEQRES 1 A 255 HIS ASP VAL THR GLU GLN GLN LYS ILE ASP ASN ASP ARG SEQRES 2 A 255 LYS GLN PHE VAL SER ASN VAL SER HIS GLU LEU ARG THR SEQRES 3 A 255 PRO LEU THR SER LEU ARG SER TYR ILE GLU ALA LEU SER SEQRES 4 A 255 ASP GLY ALA TRP LYS ASP PRO GLU VAL ALA PRO GLY PHE SEQRES 5 A 255 LEU LYS VAL THR GLN GLU GLU THR ASP ARG MET ILE ARG SEQRES 6 A 255 MET ILE ASN GLU LEU LEU SER LEU SER ARG MET ASP SER SEQRES 7 A 255 GLY THR THR ARG VAL ASP MET GLU LEU VAL ASN ILE ASN SEQRES 8 A 255 GLU MET PHE ASN TYR VAL LEU ASP ARG PHE ASP MET ILE SEQRES 9 A 255 LEU LYS LYS ASP ASP ASN PRO ALA LYS TYR TYR THR ILE SEQRES 10 A 255 LYS ARG GLU PHE THR LYS ARG ASP LEU TRP VAL GLU ILE SEQRES 11 A 255 ASP THR ASP LYS PHE THR GLN VAL LEU ASP ASN ILE MET SEQRES 12 A 255 ASN ASN ALA ILE LYS TYR SER PRO ASP GLY GLY VAL VAL SEQRES 13 A 255 THR CYS ARG LEU LEU GLU THR HIS ASN GLN VAL ILE ILE SEQRES 14 A 255 SER ILE SER ASP GLN GLY LEU GLY ILE PRO ARG ALA ASP SEQRES 15 A 255 LEU GLY HIS VAL PHE ASP ARG PHE PHE ARG VAL ASP LYS SEQRES 16 A 255 ALA ARG SER ARG ALA GLN GLY GLY THR GLY LEU GLY LEU SEQRES 17 A 255 ALA ILE SER LYS GLU VAL VAL GLN MET LEU GLY GLY ARG SEQRES 18 A 255 ILE TRP VAL ASP SER VAL GLU GLY LYS GLY SER THR PHE SEQRES 19 A 255 TYR ILE SER LEU PRO TYR GLU PRO TYR GLU GLU GLU ASP SEQRES 20 A 255 LEU TRP ASP ASP ASP SER GLN ALA SEQRES 1 B 255 HIS ASP VAL THR GLU GLN GLN LYS ILE ASP ASN ASP ARG SEQRES 2 B 255 LYS GLN PHE VAL SER ASN VAL SER HIS GLU LEU ARG THR SEQRES 3 B 255 PRO LEU THR SER LEU ARG SER TYR ILE GLU ALA LEU SER SEQRES 4 B 255 ASP GLY ALA TRP LYS ASP PRO GLU VAL ALA PRO GLY PHE SEQRES 5 B 255 LEU LYS VAL THR GLN GLU GLU THR ASP ARG MET ILE ARG SEQRES 6 B 255 MET ILE ASN GLU LEU LEU SER LEU SER ARG MET ASP SER SEQRES 7 B 255 GLY THR THR ARG VAL ASP MET GLU LEU VAL ASN ILE ASN SEQRES 8 B 255 GLU MET PHE ASN TYR VAL LEU ASP ARG PHE ASP MET ILE SEQRES 9 B 255 LEU LYS LYS ASP ASP ASN PRO ALA LYS TYR TYR THR ILE SEQRES 10 B 255 LYS ARG GLU PHE THR LYS ARG ASP LEU TRP VAL GLU ILE SEQRES 11 B 255 ASP THR ASP LYS PHE THR GLN VAL LEU ASP ASN ILE MET SEQRES 12 B 255 ASN ASN ALA ILE LYS TYR SER PRO ASP GLY GLY VAL VAL SEQRES 13 B 255 THR CYS ARG LEU LEU GLU THR HIS ASN GLN VAL ILE ILE SEQRES 14 B 255 SER ILE SER ASP GLN GLY LEU GLY ILE PRO ARG ALA ASP SEQRES 15 B 255 LEU GLY HIS VAL PHE ASP ARG PHE PHE ARG VAL ASP LYS SEQRES 16 B 255 ALA ARG SER ARG ALA GLN GLY GLY THR GLY LEU GLY LEU SEQRES 17 B 255 ALA ILE SER LYS GLU VAL VAL GLN MET LEU GLY GLY ARG SEQRES 18 B 255 ILE TRP VAL ASP SER VAL GLU GLY LYS GLY SER THR PHE SEQRES 19 B 255 TYR ILE SER LEU PRO TYR GLU PRO TYR GLU GLU GLU ASP SEQRES 20 B 255 LEU TRP ASP ASP ASP SER GLN ALA HET ACP A 701 31 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET ACP B 701 31 HET SO4 B 702 5 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM SO4 SULFATE ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 ACP 2(C11 H18 N5 O12 P3) FORMUL 4 SO4 4(O4 S 2-) FORMUL 9 HOH *6(H2 O) HELIX 1 AA1 VAL A 372 GLY A 410 1 39 HELIX 2 AA2 ALA A 411 ASP A 414 5 4 HELIX 3 AA3 VAL A 417 ASP A 446 1 30 HELIX 4 AA4 ILE A 459 LYS A 475 1 17 HELIX 5 AA5 ASP A 500 TYR A 518 1 19 HELIX 6 AA6 PRO A 548 LEU A 552 5 5 HELIX 7 AA7 GLY A 553 ASP A 557 5 5 HELIX 8 AA8 LEU A 575 LEU A 587 1 13 HELIX 9 AA9 GLN B 384 LEU B 393 1 10 HELIX 10 AB1 LEU B 393 ASP B 409 1 17 HELIX 11 AB2 GLY B 410 ASP B 414 5 5 HELIX 12 AB3 VAL B 417 LEU B 442 1 26 HELIX 13 AB4 ILE B 459 LYS B 476 1 18 HELIX 14 AB5 ASP B 500 TYR B 518 1 19 HELIX 15 AB6 PRO B 548 LEU B 552 5 5 HELIX 16 AB7 GLY B 553 ASP B 557 5 5 HELIX 17 AB8 LEU B 575 LEU B 587 1 13 SHEET 1 AA1 2 GLU A 455 ASN A 458 0 SHEET 2 AA1 2 TRP A 496 ILE A 499 -1 O ILE A 499 N GLU A 455 SHEET 1 AA2 5 THR A 485 PHE A 490 0 SHEET 2 AA2 5 VAL A 524 GLU A 531 1 O VAL A 525 N THR A 485 SHEET 3 AA2 5 GLN A 535 ASP A 542 -1 O ILE A 537 N LEU A 530 SHEET 4 AA2 5 GLY A 600 PRO A 608 -1 O LEU A 607 N VAL A 536 SHEET 5 AA2 5 ARG A 590 VAL A 596 -1 N ASP A 594 O THR A 602 SHEET 1 AA3 2 GLU B 455 ASN B 458 0 SHEET 2 AA3 2 TRP B 496 ILE B 499 -1 O VAL B 497 N VAL B 457 SHEET 1 AA4 5 TYR B 484 PHE B 490 0 SHEET 2 AA4 5 GLY B 523 THR B 532 1 O VAL B 525 N THR B 485 SHEET 3 AA4 5 GLN B 535 SER B 541 -1 O ILE B 537 N LEU B 530 SHEET 4 AA4 5 GLY B 600 PRO B 608 -1 O LEU B 607 N VAL B 536 SHEET 5 AA4 5 ARG B 590 VAL B 596 -1 N TRP B 592 O TYR B 604 SITE 1 AC1 19 ASN A 510 ASN A 514 LYS A 517 TYR A 518 SITE 2 AC1 19 ASP A 542 VAL A 555 PHE A 560 ARG A 561 SITE 3 AC1 19 VAL A 562 GLY A 572 THR A 573 GLY A 574 SITE 4 AC1 19 LEU A 575 GLY A 576 LEU A 577 SER A 601 SITE 5 AC1 19 PHE A 603 HOH A 801 HOH A 802 SITE 1 AC2 2 SER A 387 HIS A 391 SITE 1 AC3 4 GLY A 420 THR A 532 ASN A 534 GLN A 535 SITE 1 AC4 3 SER A 441 ARG A 444 MET A 445 SITE 1 AC5 20 HIS B 391 ASN B 513 ASN B 514 LYS B 517 SITE 2 AC5 20 TYR B 518 ASP B 542 LEU B 545 GLY B 546 SITE 3 AC5 20 ILE B 547 VAL B 555 ARG B 561 VAL B 562 SITE 4 AC5 20 ARG B 566 GLY B 572 THR B 573 GLY B 574 SITE 5 AC5 20 LEU B 575 GLY B 576 LEU B 577 SER B 601 SITE 1 AC6 4 HIS B 391 ARG B 394 THR B 395 ASN B 510 CRYST1 54.645 97.757 117.342 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018300 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008522 0.00000