HEADER HYDROLASE 26-JUN-15 5C9D TITLE CRYSTAL STRUCTURE OF A RETROPEPSIN-LIKE ASPARTIC PROTEASE FROM TITLE 2 RICKETTSIA CONORII CAVEAT 5C9D RESIDUES A MET 109 AND A GLY 110 ARE LINKED (INTERVENING CAVEAT 2 5C9D RESIDUES YKWST ARE OMITTED). COMPND MOL_ID: 1; COMPND 2 MOLECULE: APRICK PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA CONORII; SOURCE 3 ORGANISM_TAXID: 781; SOURCE 4 GENE: RC1339; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS PEPSIN, APRICK, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LI,A.GUSTCHINA,R.CRUZ,M.SIMOES,P.CURTO,J.MARTINEZ,C.FARO,I.SIMOES, AUTHOR 2 A.WLODAWER REVDAT 3 06-MAR-24 5C9D 1 LINK REVDAT 2 14-MAR-18 5C9D 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV SEQRES HET HETNAM REVDAT 2 3 1 FORMUL HELIX SHEET LINK REVDAT 2 4 1 SITE ATOM REVDAT 1 14-OCT-15 5C9D 0 JRNL AUTH M.LI,A.GUSTCHINA,R.CRUZ,M.SIMOES,P.CURTO,J.MARTINEZ,C.FARO, JRNL AUTH 2 I.SIMOES,A.WLODAWER JRNL TITL STRUCTURE OF RC1339/APRC FROM RICKETTSIA CONORII, A JRNL TITL 2 RETROPEPSIN-LIKE ASPARTIC PROTEASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 2119 2015 JRNL REFN ESSN 1399-0047 JRNL DOI 10.1107/S1399004715013930 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 7304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 354 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 432 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.4770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1832 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.20000 REMARK 3 B22 (A**2) : 4.20000 REMARK 3 B33 (A**2) : -8.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.403 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.420 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1854 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1898 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2487 ; 1.707 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4353 ; 0.834 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ;10.466 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;38.752 ;24.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;19.522 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.345 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2057 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 408 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 935 ; 8.874 ; 4.327 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 934 ; 8.871 ; 4.328 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1166 ;12.446 ; 6.467 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1167 ;12.444 ; 6.467 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 917 ;10.192 ; 5.155 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 918 ;10.187 ; 5.154 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1322 ;14.799 ; 7.350 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2033 ;19.206 ;35.521 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2033 ;19.201 ;35.504 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 110 B 229 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0860 36.4825 40.9454 REMARK 3 T TENSOR REMARK 3 T11: 0.4681 T22: 0.5919 REMARK 3 T33: 0.3550 T12: -0.1337 REMARK 3 T13: 0.0831 T23: -0.1568 REMARK 3 L TENSOR REMARK 3 L11: 3.0954 L22: 6.1447 REMARK 3 L33: 1.6672 L12: 3.9965 REMARK 3 L13: 0.9097 L23: 0.0849 REMARK 3 S TENSOR REMARK 3 S11: -0.4861 S12: 0.4673 S13: -0.1999 REMARK 3 S21: -0.5774 S22: 0.5237 S23: -0.3912 REMARK 3 S31: 0.0630 S32: 0.2914 S33: -0.0376 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9621 60.0313 48.5066 REMARK 3 T TENSOR REMARK 3 T11: 0.2737 T22: 0.5263 REMARK 3 T33: 0.2520 T12: -0.0378 REMARK 3 T13: -0.0207 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 2.4806 L22: 0.8139 REMARK 3 L33: 3.1175 L12: 0.0151 REMARK 3 L13: -0.6948 L23: 0.6543 REMARK 3 S TENSOR REMARK 3 S11: -0.1991 S12: 0.5116 S13: -0.0603 REMARK 3 S21: 0.1132 S22: 0.1952 S23: 0.0222 REMARK 3 S31: -0.2941 S32: 0.2360 S33: 0.0040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5C9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M DL-MALIC ACID, PH 7.0, 2% 1,2 REMARK 280 -PROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.64500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.64500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.49800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.74900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.64500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.24700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.64500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.24700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.64500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.74900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 52.64500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.64500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.49800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.64500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.64500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.49800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.64500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 68.24700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.64500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 22.74900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.64500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.74900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.64500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 68.24700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.64500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.64500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 45.49800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.64500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.24700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 164 REMARK 465 TYR A 165 REMARK 465 THR A 166 REMARK 465 ARG A 167 REMARK 465 THR A 168 REMARK 465 TYR A 169 REMARK 465 LEU A 170 REMARK 465 THR A 171 REMARK 465 ALA A 172 REMARK 465 ASN A 173 REMARK 465 GLY A 174 REMARK 465 GLU A 175 REMARK 465 GLU A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 MET B 109 REMARK 465 ASN B 230 REMARK 465 TYR B 231 REMARK 465 ALA B 232 REMARK 465 ALA B 233 REMARK 465 ALA B 234 REMARK 465 LEU B 235 REMARK 465 GLU B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PHE B 220 O PHE B 220 16555 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 16.20 -69.11 REMARK 500 ASN A 132 -1.15 72.13 REMARK 500 LYS A 177 -151.60 -83.19 REMARK 500 ASN A 194 71.11 51.89 REMARK 500 ASP A 203 -76.06 -77.44 REMARK 500 LEU A 204 112.49 -37.16 REMARK 500 PHE A 217 -169.51 -168.02 REMARK 500 PHE A 220 156.22 179.37 REMARK 500 ASP A 223 -160.51 -119.20 REMARK 500 LYS A 224 70.47 -66.26 REMARK 500 ASP A 225 41.05 70.75 REMARK 500 VAL B 111 -138.08 55.22 REMARK 500 ALA B 117 91.06 -52.19 REMARK 500 ARG B 118 121.88 -25.27 REMARK 500 ASP B 121 3.92 -68.36 REMARK 500 ASN B 132 45.85 31.14 REMARK 500 ASP B 145 -156.80 -159.43 REMARK 500 LYS B 218 82.83 -155.17 REMARK 500 PHE B 220 146.50 -173.03 REMARK 500 ASP B 223 -149.56 85.10 REMARK 500 LYS B 224 -91.97 42.68 REMARK 500 LEU B 226 94.76 -178.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 217 LYS A 218 -115.72 REMARK 500 ASP B 223 LYS B 224 -144.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 110 OE1 REMARK 620 2 GLU A 110 OE2 41.7 REMARK 620 3 GLY A 189 O 139.5 100.1 REMARK 620 4 ASN B 127 O 91.0 97.9 111.1 REMARK 620 5 HOH B 302 O 84.2 125.5 128.8 86.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C9B RELATED DB: PDB REMARK 900 RELATED ID: 5C9F RELATED DB: PDB DBREF 5C9D A 110 231 UNP Q92FY8 Q92FY8_RICCN 110 231 DBREF 5C9D B 110 231 UNP Q92FY8 Q92FY8_RICCN 110 231 SEQADV 5C9D MET A 109 UNP Q92FY8 INITIATING METHIONINE SEQADV 5C9D ALA A 232 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D ALA A 233 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D ALA A 234 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D LEU A 235 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D GLU A 236 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS A 237 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS A 238 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS A 239 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS A 240 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS A 241 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS A 242 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D MET B 109 UNP Q92FY8 INITIATING METHIONINE SEQADV 5C9D ALA B 232 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D ALA B 233 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D ALA B 234 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D LEU B 235 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D GLU B 236 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS B 237 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS B 238 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS B 239 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS B 240 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS B 241 UNP Q92FY8 EXPRESSION TAG SEQADV 5C9D HIS B 242 UNP Q92FY8 EXPRESSION TAG SEQRES 1 A 134 MET GLU VAL GLY GLU ILE ILE ILE ALA ARG ASN ARG ASP SEQRES 2 A 134 GLY HIS PHE TYR ILE ASN ALA PHE VAL ASN ASN VAL LYS SEQRES 3 A 134 ILE LYS PHE MET VAL ASP THR GLY ALA SER ASP ILE ALA SEQRES 4 A 134 LEU THR LYS GLU ASP ALA GLN LYS LEU GLY PHE ASP LEU SEQRES 5 A 134 THR LYS LEU LYS TYR THR ARG THR TYR LEU THR ALA ASN SEQRES 6 A 134 GLY GLU ASN LYS ALA ALA PRO ILE THR LEU ASN SER VAL SEQRES 7 A 134 VAL ILE GLY LYS GLU PHE LYS ASN ILE LYS GLY HIS VAL SEQRES 8 A 134 GLY LEU GLY ASP LEU ASP ILE SER LEU LEU GLY MET SER SEQRES 9 A 134 LEU LEU GLU ARG PHE LYS GLY PHE ARG ILE ASP LYS ASP SEQRES 10 A 134 LEU LEU ILE LEU ASN TYR ALA ALA ALA LEU GLU HIS HIS SEQRES 11 A 134 HIS HIS HIS HIS SEQRES 1 B 134 MET GLU VAL GLY GLU ILE ILE ILE ALA ARG ASN ARG ASP SEQRES 2 B 134 GLY HIS PHE TYR ILE ASN ALA PHE VAL ASN ASN VAL LYS SEQRES 3 B 134 ILE LYS PHE MET VAL ASP THR GLY ALA SER ASP ILE ALA SEQRES 4 B 134 LEU THR LYS GLU ASP ALA GLN LYS LEU GLY PHE ASP LEU SEQRES 5 B 134 THR LYS LEU LYS TYR THR ARG THR TYR LEU THR ALA ASN SEQRES 6 B 134 GLY GLU ASN LYS ALA ALA PRO ILE THR LEU ASN SER VAL SEQRES 7 B 134 VAL ILE GLY LYS GLU PHE LYS ASN ILE LYS GLY HIS VAL SEQRES 8 B 134 GLY LEU GLY ASP LEU ASP ILE SER LEU LEU GLY MET SER SEQRES 9 B 134 LEU LEU GLU ARG PHE LYS GLY PHE ARG ILE ASP LYS ASP SEQRES 10 B 134 LEU LEU ILE LEU ASN TYR ALA ALA ALA LEU GLU HIS HIS SEQRES 11 B 134 HIS HIS HIS HIS HET NA A 301 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *5(H2 O) HELIX 1 AA1 THR A 149 LEU A 156 1 8 HELIX 2 AA2 ASP A 159 LEU A 163 5 5 HELIX 3 AA3 GLY A 210 GLU A 215 1 6 HELIX 4 AA4 LYS B 150 LEU B 156 1 7 HELIX 5 AA5 GLY B 210 GLU B 215 1 6 SHEET 1 AA1 5 PHE A 220 ASP A 223 0 SHEET 2 AA1 5 LEU A 226 ALA A 232 -1 O ILE A 228 N ARG A 221 SHEET 3 AA1 5 GLU A 110 ALA A 117 -1 N ILE A 114 O LEU A 229 SHEET 4 AA1 5 ILE B 115 ILE B 116 -1 O ILE B 115 N VAL A 111 SHEET 5 AA1 5 LEU B 227 ILE B 228 -1 O LEU B 227 N ILE B 116 SHEET 1 AA2 7 TYR A 125 VAL A 130 0 SHEET 2 AA2 7 VAL A 133 VAL A 139 -1 O PHE A 137 N ILE A 126 SHEET 3 AA2 7 SER A 207 LEU A 209 1 O SER A 207 N MET A 138 SHEET 4 AA2 7 ILE A 146 LEU A 148 -1 N ALA A 147 O LEU A 208 SHEET 5 AA2 7 GLU A 191 GLY A 200 1 O GLY A 200 N LEU A 148 SHEET 6 AA2 7 ALA A 178 VAL A 187 -1 N VAL A 186 O PHE A 192 SHEET 7 AA2 7 TYR A 125 VAL A 130 -1 N PHE A 129 O VAL A 187 SHEET 1 AA3 4 ILE B 146 THR B 149 0 SHEET 2 AA3 4 GLU B 191 GLY B 200 1 O HIS B 198 N LEU B 148 SHEET 3 AA3 4 GLY B 174 VAL B 187 -1 N ALA B 179 O VAL B 199 SHEET 4 AA3 4 ARG B 167 THR B 171 -1 N THR B 171 O GLY B 174 SHEET 1 AA4 6 ILE B 146 THR B 149 0 SHEET 2 AA4 6 GLU B 191 GLY B 200 1 O HIS B 198 N LEU B 148 SHEET 3 AA4 6 GLY B 174 VAL B 187 -1 N ALA B 179 O VAL B 199 SHEET 4 AA4 6 TYR B 125 VAL B 130 -1 N PHE B 129 O VAL B 187 SHEET 5 AA4 6 VAL B 133 VAL B 139 -1 O PHE B 137 N ILE B 126 SHEET 6 AA4 6 SER B 207 LEU B 209 1 O SER B 207 N MET B 138 LINK OE1 GLU A 110 NA NA A 301 1555 1555 3.07 LINK OE2 GLU A 110 NA NA A 301 1555 1555 3.08 LINK O GLY A 189 NA NA A 301 1555 1555 2.84 LINK NA NA A 301 O ASN B 127 1555 1555 3.18 LINK NA NA A 301 O HOH B 302 1555 1555 2.23 SITE 1 AC1 4 GLU A 110 GLY A 189 ASN B 127 HOH B 302 CRYST1 105.290 105.290 90.996 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010989 0.00000