HEADER TRANSFERASE 29-JUN-15 5C9U TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE IN TITLE 2 COMPLEX WITH 2-(2-(2,4-DICHLOROPHENYL)HYDRAZINYL)-2-OXOACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE SYNTHASE G; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.3.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: GLCB, RV1837C, MTCY1A11.06; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P6HISF11D KEYWDS FRAGMENT, COMPLEX, ACETYL-TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-L.HUANG,J.C.SACCHETTINI REVDAT 4 27-SEP-23 5C9U 1 LINK REVDAT 3 11-JAN-17 5C9U 1 JRNL REVDAT 2 26-OCT-16 5C9U 1 JRNL REVDAT 1 10-AUG-16 5C9U 0 JRNL AUTH H.L.HUANG,I.V.KRIEGER,M.K.PARAI,V.B.GAWANDI,J.C.SACCHETTINI JRNL TITL MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE STRUCTURES WITH JRNL TITL 2 FRAGMENTS REVEAL A PORTAL FOR SUBSTRATE/PRODUCT EXCHANGE. JRNL REF J. BIOL. CHEM. V. 291 27421 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27738104 JRNL DOI 10.1074/JBC.M116.750877 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.V.KRIEGER,J.S.FREUNDLICH,V.B.GAWANDI,J.P.ROBERTS,Q.SUN, REMARK 1 AUTH 2 J.L.OWEN,M.T.FRAILE,S.I.HUSS,J.L.LAVANDERA,T.R.IOERGER, REMARK 1 AUTH 3 J.C.SACCHETTINI REMARK 1 TITL STRUCTURE-GUIDED DISCOVERY OF PHENYL-DIKETO ACIDS AS POTENT REMARK 1 TITL 2 INHIBITORS OF M. TUBERCULOSIS MALATE SYNTHASE. REMARK 1 REF CHEM.BIOL. V. 19 1556 2012 REMARK 1 REFN ISSN 1074-5521 REMARK 1 PMID 23261599 REMARK 1 DOI 10.1016/J.CHEMBIOL.2012.09.018 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.V.SMITH,C.C.HUANG,A.MICZAK,D.G.RUSSELL,J.C.SACCHETTINI, REMARK 1 AUTH 2 K.HONER ZU BENTRUP REMARK 1 TITL BIOCHEMICAL AND STRUCTURAL STUDIES OF MALATE SYNTHASE FROM REMARK 1 TITL 2 MYCOBACTERIUM TUBERCULOSIS. REMARK 1 REF J.BIOL.CHEM. V. 278 1735 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12393860 REMARK 1 DOI 10.1074/JBC.M209248200 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 49250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6926 - 5.1047 0.75 2294 116 0.2055 0.2219 REMARK 3 2 5.1047 - 4.0526 0.64 1865 81 0.1771 0.2011 REMARK 3 3 4.0526 - 3.5406 0.77 2166 122 0.1801 0.2214 REMARK 3 4 3.5406 - 3.2170 0.90 2522 128 0.1789 0.2446 REMARK 3 5 3.2170 - 2.9864 0.95 2650 147 0.1784 0.2548 REMARK 3 6 2.9864 - 2.8104 0.97 2705 143 0.1849 0.2325 REMARK 3 7 2.8104 - 2.6697 0.98 2705 162 0.1817 0.2522 REMARK 3 8 2.6697 - 2.5535 0.99 2703 156 0.1748 0.2610 REMARK 3 9 2.5535 - 2.4552 0.99 2753 136 0.1729 0.2215 REMARK 3 10 2.4552 - 2.3705 0.99 2712 150 0.1726 0.2275 REMARK 3 11 2.3705 - 2.2963 1.00 2736 146 0.1698 0.2309 REMARK 3 12 2.2963 - 2.2307 1.00 2718 147 0.1771 0.2403 REMARK 3 13 2.2307 - 2.1720 1.00 2734 165 0.1783 0.2513 REMARK 3 14 2.1720 - 2.1190 1.00 2705 147 0.1773 0.2367 REMARK 3 15 2.1190 - 2.0708 1.00 2716 126 0.1770 0.2554 REMARK 3 16 2.0708 - 2.0268 1.00 2713 151 0.1843 0.2831 REMARK 3 17 2.0268 - 1.9862 1.00 2730 157 0.1921 0.2328 REMARK 3 18 1.9862 - 1.9487 0.95 2609 134 0.2027 0.2777 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5578 REMARK 3 ANGLE : 1.151 7585 REMARK 3 CHIRALITY : 0.082 865 REMARK 3 PLANARITY : 0.006 1001 REMARK 3 DIHEDRAL : 13.859 2032 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5C9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49254 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.949 REMARK 200 RESOLUTION RANGE LOW (A) : 44.681 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1N8I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM CHLORIDE, TRIS, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.32750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.37000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 168.49125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.16375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 168.49125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.16375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.32750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 302 REMARK 465 VAL A 303 REMARK 465 ASP A 304 REMARK 465 LYS A 305 REMARK 465 ASP A 306 REMARK 465 GLY A 307 REMARK 465 THR A 308 REMARK 465 ALA A 309 REMARK 465 PHE A 310 REMARK 465 LEU A 311 REMARK 465 VAL A 381 REMARK 465 ASN A 382 REMARK 465 LYS A 728 REMARK 465 PRO A 729 REMARK 465 ALA A 730 REMARK 465 PRO A 731 REMARK 465 SER A 732 REMARK 465 ASP A 733 REMARK 465 ARG A 734 REMARK 465 ALA A 735 REMARK 465 GLY A 736 REMARK 465 ASP A 737 REMARK 465 ASP A 738 REMARK 465 ALA A 739 REMARK 465 ALA A 740 REMARK 465 ARG A 741 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1008 O HOH A 1220 1.84 REMARK 500 O HOH A 936 O HOH A 1190 1.86 REMARK 500 O HOH A 950 O HOH A 1370 2.02 REMARK 500 O HOH A 936 O HOH A 1275 2.06 REMARK 500 O HOH A 1394 O HOH A 1506 2.07 REMARK 500 O HOH A 1402 O HOH A 1446 2.10 REMARK 500 O HOH A 1071 O HOH A 1250 2.12 REMARK 500 O HOH A 1143 O HOH A 1370 2.15 REMARK 500 O HOH A 1278 O HOH A 1426 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1029 O HOH A 1345 8675 2.01 REMARK 500 O HOH A 1009 O HOH A 1488 8675 2.08 REMARK 500 O HOH A 1008 O HOH A 1314 3654 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 248 CA GLN A 248 C 0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 248 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 GLN A 248 CA - C - N ANGL. DEV. = -17.1 DEGREES REMARK 500 GLN A 248 O - C - N ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 73 -76.72 -76.05 REMARK 500 GLU A 74 -21.64 91.10 REMARK 500 ILE A 76 101.27 56.01 REMARK 500 SER A 226 70.23 -158.71 REMARK 500 ASP A 244 91.42 -162.15 REMARK 500 SER A 264 -88.15 -122.84 REMARK 500 GLU A 273 -113.40 -102.42 REMARK 500 SER A 379 -129.48 -72.85 REMARK 500 ASN A 387 -88.56 -110.52 REMARK 500 GLU A 434 14.77 -144.81 REMARK 500 ARG A 508 -35.38 -130.48 REMARK 500 ALA A 674 70.07 -63.39 REMARK 500 ASP A 676 -131.19 140.01 REMARK 500 ASN A 685 54.42 -93.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 675 ASP A 676 145.09 REMARK 500 ASP A 676 VAL A 677 -149.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 248 -30.00 REMARK 500 GLN A 248 -28.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1513 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1514 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A1515 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1516 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A1517 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A1518 DISTANCE = 9.40 ANGSTROMS REMARK 525 HOH A1519 DISTANCE = 9.95 ANGSTROMS REMARK 525 HOH A1520 DISTANCE = 12.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 434 OE2 REMARK 620 2 ASP A 462 OD2 94.3 REMARK 620 3 4Z1 A 803 O01 93.0 94.6 REMARK 620 4 4Z1 A 803 O05 98.8 161.3 71.6 REMARK 620 5 HOH A 949 O 175.5 82.8 90.6 84.8 REMARK 620 6 HOH A1026 O 91.0 96.0 168.3 96.9 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 930 O REMARK 620 2 HOH A1126 O 155.5 REMARK 620 3 HOH A1490 O 105.9 75.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4Z1 A 803 DBREF 5C9U A 1 741 UNP P9WK17 MASZ_MYCTU 1 741 SEQADV 5C9U ALA A 619 UNP P9WK17 CYS 619 ENGINEERED MUTATION SEQRES 1 A 741 MET THR ASP ARG VAL SER VAL GLY ASN LEU ARG ILE ALA SEQRES 2 A 741 ARG VAL LEU TYR ASP PHE VAL ASN ASN GLU ALA LEU PRO SEQRES 3 A 741 GLY THR ASP ILE ASP PRO ASP SER PHE TRP ALA GLY VAL SEQRES 4 A 741 ASP LYS VAL VAL ALA ASP LEU THR PRO GLN ASN GLN ALA SEQRES 5 A 741 LEU LEU ASN ALA ARG ASP GLU LEU GLN ALA GLN ILE ASP SEQRES 6 A 741 LYS TRP HIS ARG ARG ARG VAL ILE GLU PRO ILE ASP MET SEQRES 7 A 741 ASP ALA TYR ARG GLN PHE LEU THR GLU ILE GLY TYR LEU SEQRES 8 A 741 LEU PRO GLU PRO ASP ASP PHE THR ILE THR THR SER GLY SEQRES 9 A 741 VAL ASP ALA GLU ILE THR THR THR ALA GLY PRO GLN LEU SEQRES 10 A 741 VAL VAL PRO VAL LEU ASN ALA ARG PHE ALA LEU ASN ALA SEQRES 11 A 741 ALA ASN ALA ARG TRP GLY SER LEU TYR ASP ALA LEU TYR SEQRES 12 A 741 GLY THR ASP VAL ILE PRO GLU THR ASP GLY ALA GLU LYS SEQRES 13 A 741 GLY PRO THR TYR ASN LYS VAL ARG GLY ASP LYS VAL ILE SEQRES 14 A 741 ALA TYR ALA ARG LYS PHE LEU ASP ASP SER VAL PRO LEU SEQRES 15 A 741 SER SER GLY SER PHE GLY ASP ALA THR GLY PHE THR VAL SEQRES 16 A 741 GLN ASP GLY GLN LEU VAL VAL ALA LEU PRO ASP LYS SER SEQRES 17 A 741 THR GLY LEU ALA ASN PRO GLY GLN PHE ALA GLY TYR THR SEQRES 18 A 741 GLY ALA ALA GLU SER PRO THR SER VAL LEU LEU ILE ASN SEQRES 19 A 741 HIS GLY LEU HIS ILE GLU ILE LEU ILE ASP PRO GLU SER SEQRES 20 A 741 GLN VAL GLY THR THR ASP ARG ALA GLY VAL LYS ASP VAL SEQRES 21 A 741 ILE LEU GLU SER ALA ILE THR THR ILE MET ASP PHE GLU SEQRES 22 A 741 ASP SER VAL ALA ALA VAL ASP ALA ALA ASP LYS VAL LEU SEQRES 23 A 741 GLY TYR ARG ASN TRP LEU GLY LEU ASN LYS GLY ASP LEU SEQRES 24 A 741 ALA ALA ALA VAL ASP LYS ASP GLY THR ALA PHE LEU ARG SEQRES 25 A 741 VAL LEU ASN ARG ASP ARG ASN TYR THR ALA PRO GLY GLY SEQRES 26 A 741 GLY GLN PHE THR LEU PRO GLY ARG SER LEU MET PHE VAL SEQRES 27 A 741 ARG ASN VAL GLY HIS LEU MET THR ASN ASP ALA ILE VAL SEQRES 28 A 741 ASP THR ASP GLY SER GLU VAL PHE GLU GLY ILE MET ASP SEQRES 29 A 741 ALA LEU PHE THR GLY LEU ILE ALA ILE HIS GLY LEU LYS SEQRES 30 A 741 ALA SER ASP VAL ASN GLY PRO LEU ILE ASN SER ARG THR SEQRES 31 A 741 GLY SER ILE TYR ILE VAL LYS PRO LYS MET HIS GLY PRO SEQRES 32 A 741 ALA GLU VAL ALA PHE THR CYS GLU LEU PHE SER ARG VAL SEQRES 33 A 741 GLU ASP VAL LEU GLY LEU PRO GLN ASN THR MET LYS ILE SEQRES 34 A 741 GLY ILE MET ASP GLU GLU ARG ARG THR THR VAL ASN LEU SEQRES 35 A 741 LYS ALA CYS ILE LYS ALA ALA ALA ASP ARG VAL VAL PHE SEQRES 36 A 741 ILE ASN THR GLY PHE LEU ASP ARG THR GLY ASP GLU ILE SEQRES 37 A 741 HIS THR SER MET GLU ALA GLY PRO MET VAL ARG LYS GLY SEQRES 38 A 741 THR MET LYS SER GLN PRO TRP ILE LEU ALA TYR GLU ASP SEQRES 39 A 741 HIS ASN VAL ASP ALA GLY LEU ALA ALA GLY PHE SER GLY SEQRES 40 A 741 ARG ALA GLN VAL GLY LYS GLY MET TRP THR MET THR GLU SEQRES 41 A 741 LEU MET ALA ASP MET VAL GLU THR LYS ILE ALA GLN PRO SEQRES 42 A 741 ARG ALA GLY ALA SER THR ALA TRP VAL PRO SER PRO THR SEQRES 43 A 741 ALA ALA THR LEU HIS ALA LEU HIS TYR HIS GLN VAL ASP SEQRES 44 A 741 VAL ALA ALA VAL GLN GLN GLY LEU ALA GLY LYS ARG ARG SEQRES 45 A 741 ALA THR ILE GLU GLN LEU LEU THR ILE PRO LEU ALA LYS SEQRES 46 A 741 GLU LEU ALA TRP ALA PRO ASP GLU ILE ARG GLU GLU VAL SEQRES 47 A 741 ASP ASN ASN CYS GLN SER ILE LEU GLY TYR VAL VAL ARG SEQRES 48 A 741 TRP VAL ASP GLN GLY VAL GLY ALA SER LYS VAL PRO ASP SEQRES 49 A 741 ILE HIS ASP VAL ALA LEU MET GLU ASP ARG ALA THR LEU SEQRES 50 A 741 ARG ILE SER SER GLN LEU LEU ALA ASN TRP LEU ARG HIS SEQRES 51 A 741 GLY VAL ILE THR SER ALA ASP VAL ARG ALA SER LEU GLU SEQRES 52 A 741 ARG MET ALA PRO LEU VAL ASP ARG GLN ASN ALA GLY ASP SEQRES 53 A 741 VAL ALA TYR ARG PRO MET ALA PRO ASN PHE ASP ASP SER SEQRES 54 A 741 ILE ALA PHE LEU ALA ALA GLN GLU LEU ILE LEU SER GLY SEQRES 55 A 741 ALA GLN GLN PRO ASN GLY TYR THR GLU PRO ILE LEU HIS SEQRES 56 A 741 ARG ARG ARG ARG GLU PHE LYS ALA ARG ALA ALA GLU LYS SEQRES 57 A 741 PRO ALA PRO SER ASP ARG ALA GLY ASP ASP ALA ALA ARG HET MG A 801 1 HET MG A 802 1 HET 4Z1 A 803 15 HETNAM MG MAGNESIUM ION HETNAM 4Z1 [2-(2,4-DICHLOROPHENYL)HYDRAZINYL](OXO)ACETIC ACID FORMUL 2 MG 2(MG 2+) FORMUL 4 4Z1 C8 H6 CL2 N2 O3 FORMUL 5 HOH *620(H2 O) HELIX 1 AA1 ALA A 13 GLU A 23 1 11 HELIX 2 AA2 ASP A 31 ARG A 70 1 40 HELIX 3 AA3 ASP A 77 ILE A 88 1 12 HELIX 4 AA4 ASP A 106 THR A 111 1 6 HELIX 5 AA5 ASN A 123 ASN A 132 1 10 HELIX 6 AA6 LEU A 138 GLY A 144 1 7 HELIX 7 AA7 ASN A 161 VAL A 180 1 20 HELIX 8 AA8 SER A 186 ALA A 190 5 5 HELIX 9 AA9 ASN A 213 GLY A 215 5 3 HELIX 10 AB1 SER A 247 THR A 252 1 6 HELIX 11 AB2 ASP A 280 LYS A 296 1 17 HELIX 12 AB3 GLU A 360 ILE A 373 1 14 HELIX 13 AB4 HIS A 374 LYS A 377 5 4 HELIX 14 AB5 GLY A 402 GLY A 421 1 20 HELIX 15 AB6 GLU A 435 VAL A 440 1 6 HELIX 16 AB7 ASN A 441 ALA A 449 1 9 HELIX 17 AB8 GLY A 459 SER A 471 1 13 HELIX 18 AB9 ARG A 479 SER A 485 5 7 HELIX 19 AC1 GLN A 486 ALA A 503 1 18 HELIX 20 AC2 LEU A 521 LYS A 529 1 9 HELIX 21 AC3 ILE A 530 ALA A 535 1 6 HELIX 22 AC4 SER A 544 VAL A 558 1 15 HELIX 23 AC5 ASP A 559 ALA A 568 1 10 HELIX 24 AC6 THR A 574 LEU A 579 1 6 HELIX 25 AC7 ALA A 590 GLY A 616 1 27 HELIX 26 AC8 ARG A 634 HIS A 650 1 17 HELIX 27 AC9 THR A 654 ASN A 673 1 20 HELIX 28 AD1 ASN A 685 ASP A 688 5 4 HELIX 29 AD2 SER A 689 SER A 701 1 13 HELIX 30 AD3 GLY A 702 TYR A 709 5 8 HELIX 31 AD4 THR A 710 GLU A 727 1 18 SHEET 1 AA1 4 VAL A 5 VAL A 7 0 SHEET 2 AA1 4 LEU A 10 ILE A 12 -1 O ILE A 12 N VAL A 5 SHEET 3 AA1 4 THR A 346 ASP A 352 -1 O VAL A 351 N ARG A 11 SHEET 4 AA1 4 GLU A 357 PHE A 359 -1 O VAL A 358 N ILE A 350 SHEET 1 AA2 9 GLN A 116 PRO A 120 0 SHEET 2 AA2 9 THR A 267 ASP A 271 1 O ILE A 269 N LEU A 117 SHEET 3 AA2 9 LEU A 335 ARG A 339 1 O PHE A 337 N THR A 268 SHEET 4 AA2 9 ILE A 393 LYS A 397 1 O VAL A 396 N VAL A 338 SHEET 5 AA2 9 MET A 427 ASP A 433 1 O LYS A 428 N ILE A 393 SHEET 6 AA2 9 VAL A 453 THR A 458 1 O ASN A 457 N ASP A 433 SHEET 7 AA2 9 GLN A 510 LYS A 513 1 O GLN A 510 N VAL A 454 SHEET 8 AA2 9 THR A 539 VAL A 542 1 O THR A 539 N LYS A 513 SHEET 9 AA2 9 GLN A 116 PRO A 120 1 N GLN A 116 O ALA A 540 SHEET 1 AA3 5 TRP A 135 SER A 137 0 SHEET 2 AA3 5 VAL A 257 GLU A 263 -1 O LEU A 262 N GLY A 136 SHEET 3 AA3 5 LEU A 237 ILE A 243 -1 N GLU A 240 O ILE A 261 SHEET 4 AA3 5 SER A 226 ASN A 234 -1 N LEU A 232 O ILE A 239 SHEET 5 AA3 5 PHE A 217 ALA A 223 -1 N GLY A 219 O LEU A 231 SHEET 1 AA4 3 GLY A 192 GLN A 196 0 SHEET 2 AA4 3 GLN A 199 ALA A 203 -1 O VAL A 201 N THR A 194 SHEET 3 AA4 3 SER A 208 THR A 209 -1 O THR A 209 N VAL A 202 SHEET 1 AA5 2 ARG A 318 THR A 321 0 SHEET 2 AA5 2 GLN A 327 LEU A 330 -1 O PHE A 328 N TYR A 320 SHEET 1 AA6 2 LYS A 621 PRO A 623 0 SHEET 2 AA6 2 ALA A 629 MET A 631 -1 O LEU A 630 N VAL A 622 LINK OE2 GLU A 434 MG MG A 801 1555 1555 2.03 LINK OD2 ASP A 462 MG MG A 801 1555 1555 2.06 LINK MG MG A 801 O01 4Z1 A 803 1555 1555 2.23 LINK MG MG A 801 O05 4Z1 A 803 1555 1555 2.29 LINK MG MG A 801 O HOH A 949 1555 1555 2.12 LINK MG MG A 801 O HOH A1026 1555 1555 2.17 LINK MG MG A 802 O HOH A 930 1555 1555 2.30 LINK MG MG A 802 O HOH A1126 1555 1555 2.23 LINK MG MG A 802 O HOH A1490 1555 1555 2.35 CISPEP 1 ALA A 683 PRO A 684 0 5.38 SITE 1 AC1 5 GLU A 434 ASP A 462 4Z1 A 803 HOH A 949 SITE 2 AC1 5 HOH A1026 SITE 1 AC2 4 HIS A 235 HOH A 930 HOH A1126 HOH A1490 SITE 1 AC3 15 ARG A 339 GLU A 434 GLY A 459 PHE A 460 SITE 2 AC3 15 LEU A 461 ASP A 462 MET A 515 THR A 517 SITE 3 AC3 15 TRP A 541 MET A 631 ASP A 633 ALA A 635 SITE 4 AC3 15 MG A 801 HOH A 949 HOH A1276 CRYST1 78.740 78.740 224.655 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004451 0.00000