HEADER TRANSFERASE 30-JUN-15 5CB1 TITLE APO ENZYME OF HUMAN POLYMERASE LAMBDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 250-575; COMPND 5 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 6 KAPPA; COMPND 7 EC: 2.7.7.7; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYMERASE LAMBDA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.LIU,M.D.TSAI REVDAT 4 06-NOV-24 5CB1 1 REMARK REVDAT 3 08-NOV-23 5CB1 1 REMARK REVDAT 2 09-MAR-16 5CB1 1 JRNL REVDAT 1 24-FEB-16 5CB1 0 JRNL AUTH M.S.LIU,H.Y.TSAI,X.X.LIU,M.C.HO,W.J.WU,M.D.TSAI JRNL TITL STRUCTURAL MECHANISM FOR THE FIDELITY MODULATION OF DNA JRNL TITL 2 POLYMERASE LAMBDA JRNL REF J.AM.CHEM.SOC. V. 138 2389 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 26836966 JRNL DOI 10.1021/JACS.5B13368 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 17199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9752 - 7.4768 0.93 1359 152 0.1955 0.2098 REMARK 3 2 7.4768 - 5.9611 1.00 1398 155 0.2315 0.2558 REMARK 3 3 5.9611 - 5.2154 1.00 1371 152 0.2487 0.3023 REMARK 3 4 5.2154 - 4.7421 0.99 1368 151 0.2074 0.2435 REMARK 3 5 4.7421 - 4.4042 0.99 1348 151 0.2213 0.2676 REMARK 3 6 4.4042 - 4.1457 0.97 1328 146 0.2278 0.2798 REMARK 3 7 4.1457 - 3.9390 0.96 1295 150 0.2337 0.2712 REMARK 3 8 3.9390 - 3.7681 0.94 1273 141 0.2566 0.2869 REMARK 3 9 3.7681 - 3.6235 0.93 1247 137 0.2622 0.3399 REMARK 3 10 3.6235 - 3.4988 0.90 1212 131 0.2850 0.3133 REMARK 3 11 3.4988 - 3.3897 0.86 1163 125 0.2985 0.3504 REMARK 3 12 3.3897 - 3.2930 0.84 1120 126 0.3215 0.3500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4590 REMARK 3 ANGLE : 0.671 6191 REMARK 3 CHIRALITY : 0.041 674 REMARK 3 PLANARITY : 0.003 808 REMARK 3 DIHEDRAL : 11.767 1720 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18085 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1XSL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 3.0M SODIUM CHLORIDE, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 102.64250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 102.64250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.69750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 102.64250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.84875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 102.64250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.54625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 102.64250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.54625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.64250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.84875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 102.64250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 102.64250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.69750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 102.64250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 102.64250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.69750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 102.64250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 83.54625 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 102.64250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 27.84875 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 102.64250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 27.84875 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 102.64250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 83.54625 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 102.64250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 102.64250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.69750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NH1 ARG A 485 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 250 REMARK 465 ASN B 251 REMARK 465 HIS B 252 REMARK 465 ASN B 253 REMARK 465 LEU B 254 REMARK 465 HIS B 255 REMARK 465 ILE B 256 REMARK 465 THR B 257 REMARK 465 GLU B 258 REMARK 465 LYS B 259 REMARK 465 LEU B 260 REMARK 465 GLU B 261 REMARK 465 VAL B 262 REMARK 465 LEU B 263 REMARK 465 ALA B 264 REMARK 465 LYS B 265 REMARK 465 ALA B 266 REMARK 465 TYR B 267 REMARK 465 SER B 268 REMARK 465 VAL B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ASP B 272 REMARK 465 LYS B 273 REMARK 465 TRP B 274 REMARK 465 ARG B 275 REMARK 465 ALA B 276 REMARK 465 LEU B 277 REMARK 465 GLY B 278 REMARK 465 TYR B 279 REMARK 465 ALA B 280 REMARK 465 LYS B 281 REMARK 465 ALA B 282 REMARK 465 ILE B 283 REMARK 465 ASN B 284 REMARK 465 ALA B 285 REMARK 465 LEU B 286 REMARK 465 LYS B 287 REMARK 465 SER B 288 REMARK 465 PHE B 289 REMARK 465 HIS B 290 REMARK 465 LYS B 291 REMARK 465 PRO B 292 REMARK 465 VAL B 293 REMARK 465 THR B 294 REMARK 465 SER B 295 REMARK 465 TYR B 296 REMARK 465 GLN B 297 REMARK 465 GLU B 298 REMARK 465 ALA B 299 REMARK 465 CYS B 300 REMARK 465 SER B 301 REMARK 465 ILE B 302 REMARK 465 PRO B 303 REMARK 465 GLY B 304 REMARK 465 ILE B 305 REMARK 465 GLY B 306 REMARK 465 LYS B 307 REMARK 465 ARG B 308 REMARK 465 MET B 309 REMARK 465 ALA B 310 REMARK 465 GLU B 311 REMARK 465 LYS B 312 REMARK 465 ILE B 313 REMARK 465 ILE B 314 REMARK 465 GLU B 315 REMARK 465 ILE B 316 REMARK 465 LEU B 317 REMARK 465 GLU B 318 REMARK 465 SER B 319 REMARK 465 GLY B 320 REMARK 465 HIS B 321 REMARK 465 LEU B 322 REMARK 465 ARG B 323 REMARK 465 LYS B 324 REMARK 465 LEU B 325 REMARK 465 ASP B 326 REMARK 465 HIS B 327 REMARK 465 ILE B 328 REMARK 465 SER B 329 REMARK 465 GLU B 330 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 326 OH TYR A 353 1.65 REMARK 500 OE1 GLU A 391 NH2 ARG A 487 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ ARG A 485 NH1 ARG A 485 6568 1.33 REMARK 500 CZ ARG A 485 CZ ARG A 485 6568 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 462 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 GLN A 464 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 485 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU B 461 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 326 -134.16 50.19 REMARK 500 ASN A 539 -167.21 -75.23 REMARK 500 CYS B 415 -167.82 -118.68 REMARK 500 PRO B 435 -19.34 -41.47 REMARK 500 LEU B 461 81.40 -69.61 REMARK 500 SER B 463 38.36 39.23 REMARK 500 PRO B 480 121.60 -38.06 REMARK 500 SER B 528 -169.86 -122.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4W4P RELATED DB: PDB REMARK 900 4W4P CONTAINS THE SAME PROTEIN COMPLEXED WITH MNMGDCTP DBREF 5CB1 A 250 575 UNP Q9UGP5 DPOLL_HUMAN 250 575 DBREF 5CB1 B 250 575 UNP Q9UGP5 DPOLL_HUMAN 250 575 SEQRES 1 A 326 THR ASN HIS ASN LEU HIS ILE THR GLU LYS LEU GLU VAL SEQRES 2 A 326 LEU ALA LYS ALA TYR SER VAL GLN GLY ASP LYS TRP ARG SEQRES 3 A 326 ALA LEU GLY TYR ALA LYS ALA ILE ASN ALA LEU LYS SER SEQRES 4 A 326 PHE HIS LYS PRO VAL THR SER TYR GLN GLU ALA CYS SER SEQRES 5 A 326 ILE PRO GLY ILE GLY LYS ARG MET ALA GLU LYS ILE ILE SEQRES 6 A 326 GLU ILE LEU GLU SER GLY HIS LEU ARG LYS LEU ASP HIS SEQRES 7 A 326 ILE SER GLU SER VAL PRO VAL LEU GLU LEU PHE SER ASN SEQRES 8 A 326 ILE TRP GLY ALA GLY THR LYS THR ALA GLN MET TRP TYR SEQRES 9 A 326 GLN GLN GLY PHE ARG SER LEU GLU ASP ILE ARG SER GLN SEQRES 10 A 326 ALA SER LEU THR THR GLN GLN ALA ILE GLY LEU LYS HIS SEQRES 11 A 326 TYR SER ASP PHE LEU GLU ARG MET PRO ARG GLU GLU ALA SEQRES 12 A 326 THR GLU ILE GLU GLN THR VAL GLN LYS ALA ALA GLN ALA SEQRES 13 A 326 PHE ASN SER GLY LEU LEU CYS VAL ALA CYS GLY SER TYR SEQRES 14 A 326 ARG ARG GLY LYS ALA THR CYS GLY ASP VAL ASP VAL LEU SEQRES 15 A 326 ILE THR HIS PRO ASP GLY ARG SER HIS ARG GLY ILE PHE SEQRES 16 A 326 SER ARG LEU LEU ASP SER LEU ARG GLN GLU GLY PHE LEU SEQRES 17 A 326 THR ASP ASP LEU VAL SER GLN GLU GLU ASN GLY GLN GLN SEQRES 18 A 326 GLN LYS TYR LEU GLY VAL CYS ARG LEU PRO GLY PRO GLY SEQRES 19 A 326 ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL VAL PRO TYR SEQRES 20 A 326 SER GLU PHE ALA CYS ALA LEU LEU TYR PHE THR GLY SER SEQRES 21 A 326 ALA HIS PHE ASN ARG SER MET ARG ALA LEU ALA LYS THR SEQRES 22 A 326 LYS GLY MET SER LEU SER GLU HIS ALA LEU SER THR ALA SEQRES 23 A 326 VAL VAL ARG ASN THR HIS GLY CYS LYS VAL GLY PRO GLY SEQRES 24 A 326 ARG VAL LEU PRO THR PRO THR GLU LYS ASP VAL PHE ARG SEQRES 25 A 326 LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA GLU ARG ASP SEQRES 26 A 326 TRP SEQRES 1 B 326 THR ASN HIS ASN LEU HIS ILE THR GLU LYS LEU GLU VAL SEQRES 2 B 326 LEU ALA LYS ALA TYR SER VAL GLN GLY ASP LYS TRP ARG SEQRES 3 B 326 ALA LEU GLY TYR ALA LYS ALA ILE ASN ALA LEU LYS SER SEQRES 4 B 326 PHE HIS LYS PRO VAL THR SER TYR GLN GLU ALA CYS SER SEQRES 5 B 326 ILE PRO GLY ILE GLY LYS ARG MET ALA GLU LYS ILE ILE SEQRES 6 B 326 GLU ILE LEU GLU SER GLY HIS LEU ARG LYS LEU ASP HIS SEQRES 7 B 326 ILE SER GLU SER VAL PRO VAL LEU GLU LEU PHE SER ASN SEQRES 8 B 326 ILE TRP GLY ALA GLY THR LYS THR ALA GLN MET TRP TYR SEQRES 9 B 326 GLN GLN GLY PHE ARG SER LEU GLU ASP ILE ARG SER GLN SEQRES 10 B 326 ALA SER LEU THR THR GLN GLN ALA ILE GLY LEU LYS HIS SEQRES 11 B 326 TYR SER ASP PHE LEU GLU ARG MET PRO ARG GLU GLU ALA SEQRES 12 B 326 THR GLU ILE GLU GLN THR VAL GLN LYS ALA ALA GLN ALA SEQRES 13 B 326 PHE ASN SER GLY LEU LEU CYS VAL ALA CYS GLY SER TYR SEQRES 14 B 326 ARG ARG GLY LYS ALA THR CYS GLY ASP VAL ASP VAL LEU SEQRES 15 B 326 ILE THR HIS PRO ASP GLY ARG SER HIS ARG GLY ILE PHE SEQRES 16 B 326 SER ARG LEU LEU ASP SER LEU ARG GLN GLU GLY PHE LEU SEQRES 17 B 326 THR ASP ASP LEU VAL SER GLN GLU GLU ASN GLY GLN GLN SEQRES 18 B 326 GLN LYS TYR LEU GLY VAL CYS ARG LEU PRO GLY PRO GLY SEQRES 19 B 326 ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL VAL PRO TYR SEQRES 20 B 326 SER GLU PHE ALA CYS ALA LEU LEU TYR PHE THR GLY SER SEQRES 21 B 326 ALA HIS PHE ASN ARG SER MET ARG ALA LEU ALA LYS THR SEQRES 22 B 326 LYS GLY MET SER LEU SER GLU HIS ALA LEU SER THR ALA SEQRES 23 B 326 VAL VAL ARG ASN THR HIS GLY CYS LYS VAL GLY PRO GLY SEQRES 24 B 326 ARG VAL LEU PRO THR PRO THR GLU LYS ASP VAL PHE ARG SEQRES 25 B 326 LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA GLU ARG ASP SEQRES 26 B 326 TRP HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 SER A 288 1 17 HELIX 3 AA3 SER A 295 SER A 301 1 7 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 HIS A 327 ASN A 340 1 14 HELIX 6 AA6 GLY A 345 GLY A 356 1 12 HELIX 7 AA7 SER A 359 ALA A 367 1 9 HELIX 8 AA8 THR A 370 HIS A 379 1 10 HELIX 9 AA9 HIS A 379 GLU A 385 1 7 HELIX 10 AB1 ARG A 389 ASN A 407 1 19 HELIX 11 AB2 GLY A 442 GLY A 455 1 14 HELIX 12 AB3 PRO A 495 GLY A 508 1 14 HELIX 13 AB4 SER A 509 LYS A 523 1 15 HELIX 14 AB5 THR A 555 LEU A 563 1 9 HELIX 15 AB6 GLU A 569 ASP A 574 5 6 HELIX 16 AB7 VAL B 332 ASN B 340 1 9 HELIX 17 AB8 GLY B 345 GLN B 355 1 11 HELIX 18 AB9 SER B 359 ALA B 367 1 9 HELIX 19 AC1 THR B 370 HIS B 379 1 10 HELIX 20 AC2 HIS B 379 LEU B 384 1 6 HELIX 21 AC3 ARG B 389 ASN B 407 1 19 HELIX 22 AC4 GLY B 416 GLY B 421 1 6 HELIX 23 AC5 GLY B 442 GLU B 454 1 13 HELIX 24 AC6 GLU B 498 GLY B 508 1 11 HELIX 25 AC7 SER B 509 THR B 522 1 14 HELIX 26 AC8 THR B 555 LEU B 563 1 9 HELIX 27 AC9 GLU B 569 ASP B 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 CYS A 415 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O ASP A 429 N CYS A 415 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ILE A 492 N ILE A 432 SHEET 4 AA2 5 GLN A 470 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 AA2 5 LEU A 457 THR A 458 -1 N THR A 458 O VAL A 476 SHEET 1 AA3 5 LEU A 411 CYS A 415 0 SHEET 2 AA3 5 VAL A 428 THR A 433 -1 O ASP A 429 N CYS A 415 SHEET 3 AA3 5 ARG A 487 VAL A 493 1 O ILE A 492 N ILE A 432 SHEET 4 AA3 5 GLN A 470 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 AA3 5 GLN A 464 ASN A 467 -1 N ASN A 467 O GLN A 470 SHEET 1 AA4 2 MET A 525 LEU A 527 0 SHEET 2 AA4 2 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 1 AA5 2 VAL A 537 ARG A 538 0 SHEET 2 AA5 2 LYS A 544 GLY A 546 -1 O VAL A 545 N VAL A 537 SHEET 1 AA6 2 MET B 387 PRO B 388 0 SHEET 2 AA6 2 THR B 424 CYS B 425 -1 O CYS B 425 N MET B 387 SHEET 1 AA7 5 LEU B 411 CYS B 415 0 SHEET 2 AA7 5 VAL B 428 THR B 433 -1 O LEU B 431 N VAL B 413 SHEET 3 AA7 5 ARG B 487 VAL B 493 1 O ASP B 490 N VAL B 428 SHEET 4 AA7 5 GLN B 470 CYS B 477 -1 N CYS B 477 O ARG B 487 SHEET 5 AA7 5 GLU B 465 ASN B 467 -1 N ASN B 467 O GLN B 470 SHEET 1 AA8 2 MET B 525 LEU B 527 0 SHEET 2 AA8 2 LEU B 532 THR B 534 -1 O SER B 533 N SER B 526 SSBOND 1 CYS A 543 CYS B 543 1555 10775 2.03 CISPEP 1 HIS A 321 LEU A 322 0 4.01 CISPEP 2 GLY A 508 SER A 509 0 -0.60 CISPEP 3 GLY B 481 PRO B 482 0 2.53 CISPEP 4 GLY B 508 SER B 509 0 0.76 CISPEP 5 GLY B 546 PRO B 547 0 -1.04 CRYST1 205.285 205.285 111.395 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004871 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008977 0.00000