HEADER VIRUS 03-JUL-15 5CDD TITLE CRYSTAL STRUCTURE OF ISRAEL ACUTE PARALYSIS VIRUS PENTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRUCTURAL POLYPROTEIN, VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: STRUCTURAL POLYPROTEIN, VP3; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: STRUCTURAL POLYPROTEIN, VP2; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ISRAELI ACUTE PARALYSIS VIRUS; SOURCE 3 ORGANISM_TAXID: 294365; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ISRAELI ACUTE PARALYSIS VIRUS; SOURCE 6 ORGANISM_TAXID: 294365; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ISRAELI ACUTE PARALYSIS VIRUS; SOURCE 9 ORGANISM_TAXID: 294365 KEYWDS PENTAMER, CAPSID, HONEYBEE VIRUS, PATHOGEN, VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR E.MULLAPUDI,P.PLEVKA REVDAT 4 08-MAY-24 5CDD 1 REMARK REVDAT 3 24-AUG-16 5CDD 1 JRNL REVDAT 2 20-JUL-16 5CDD 1 JRNL REVDAT 1 06-JUL-16 5CDD 0 JRNL AUTH S.KALYNYCH,A.PRIDAL,L.PALKOVA,Y.LEVDANSKY,J.R.DE MIRANDA, JRNL AUTH 2 P.PLEVKA JRNL TITL VIRION STRUCTURE OF IFLAVIRUS SLOW BEE PARALYSIS VIRUS AT JRNL TITL 2 2.6-ANGSTROM RESOLUTION. JRNL REF J.VIROL. V. 90 7444 2016 JRNL REFN ESSN 1098-5514 JRNL PMID 27279610 JRNL DOI 10.1128/JVI.00680-16 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 240313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 11837 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.83400 REMARK 3 B22 (A**2) : -2.71900 REMARK 3 B33 (A**2) : -7.11500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.226 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.191 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.689 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.671 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 20.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 240313 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 20% (W/V) PEG REMARK 280 10,000, 8% ETHYLENE GLYCOL, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.08850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.15450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 137.12400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 144.15450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.08850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 137.12400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 DIHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = D5). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.999849 -0.014087 -0.010193 -0.23366 REMARK 350 BIOMT2 2 0.014049 0.309017 0.950953 20.95875 REMARK 350 BIOMT3 2 -0.010247 -0.950952 0.309168 -15.83390 REMARK 350 BIOMT1 3 0.999604 -0.008745 -0.026740 -0.60113 REMARK 350 BIOMT2 3 0.008644 -0.809017 0.587722 12.37479 REMARK 350 BIOMT3 3 -0.026773 -0.587720 -0.808621 -40.65761 REMARK 350 BIOMT1 4 0.999604 0.008644 -0.026773 -0.59459 REMARK 350 BIOMT2 4 -0.008745 -0.809017 -0.587720 -13.88914 REMARK 350 BIOMT3 4 -0.026740 0.587722 -0.808621 -40.16562 REMARK 350 BIOMT1 5 0.999849 0.014049 -0.010247 -0.22307 REMARK 350 BIOMT2 5 -0.014087 0.309017 -0.950952 -21.53718 REMARK 350 BIOMT3 5 -0.010193 0.950953 0.309168 -15.03783 REMARK 350 BIOMT1 6 -1.000000 0.000319 0.000003 0.35297 REMARK 350 BIOMT2 6 0.000319 0.999842 0.017783 0.39727 REMARK 350 BIOMT3 6 0.000003 0.017783 -0.999842 -44.68200 REMARK 350 BIOMT1 7 -0.999844 0.014183 0.010498 0.59326 REMARK 350 BIOMT2 7 0.014183 0.292053 0.956297 21.07106 REMARK 350 BIOMT3 7 0.010498 0.956297 -0.292208 -28.47789 REMARK 350 BIOMT1 8 -0.999601 0.008485 0.026925 0.95793 REMARK 350 BIOMT2 8 0.008485 -0.819343 0.573240 12.04689 REMARK 350 BIOMT3 8 0.026925 0.573240 0.818945 -3.81076 REMARK 350 BIOMT1 9 -0.999607 -0.008900 0.026583 0.94301 REMARK 350 BIOMT2 9 -0.008900 -0.798435 -0.602016 -14.20414 REMARK 350 BIOMT3 9 0.026583 -0.602016 0.798042 -4.76973 REMARK 350 BIOMT1 10 -0.999853 -0.013948 0.009944 0.56912 REMARK 350 BIOMT2 10 -0.013948 0.325884 -0.945307 -21.40400 REMARK 350 BIOMT3 10 0.009944 -0.945307 -0.326030 -30.02955 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE C 76 OD1 ASP C 236 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 208 CD PRO A 208 N 0.110 REMARK 500 PRO A 208 CA PRO A 208 C -0.137 REMARK 500 GLU C 229 CA GLU C 229 CB -0.180 REMARK 500 GLU C 229 CG GLU C 229 CD -0.104 REMARK 500 GLU C 229 CA GLU C 229 C -0.218 REMARK 500 GLU C 229 C GLU C 229 O -0.191 REMARK 500 SER C 230 CB SER C 230 OG -0.108 REMARK 500 SER C 230 C SER C 230 O -0.146 REMARK 500 GLU C 231 CD GLU C 231 OE1 -0.183 REMARK 500 GLU C 231 CD GLU C 231 OE2 -0.101 REMARK 500 GLU C 231 C GLU C 231 O -0.165 REMARK 500 VAL C 249 N VAL C 249 CA -0.142 REMARK 500 VAL C 249 CB VAL C 249 CG1 -0.185 REMARK 500 VAL C 249 CB VAL C 249 CG2 -0.137 REMARK 500 VAL C 249 C VAL C 249 O -0.274 REMARK 500 ILE C 250 C ILE C 250 O -0.215 REMARK 500 PRO C 251 CA PRO C 251 CB -0.122 REMARK 500 PRO C 251 CA PRO C 251 C -0.176 REMARK 500 PRO C 251 C PRO C 251 O -0.193 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 19 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 VAL A 207 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO A 208 C - N - CD ANGL. DEV. = -38.5 DEGREES REMARK 500 PRO A 208 CA - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 PRO A 208 N - CA - CB ANGL. DEV. = 8.3 DEGREES REMARK 500 PRO A 208 N - CD - CG ANGL. DEV. = -9.8 DEGREES REMARK 500 GLU C 229 CB - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 SER C 230 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 VAL C 249 CG1 - CB - CG2 ANGL. DEV. = -13.3 DEGREES REMARK 500 PRO C 251 CA - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 7 139.46 -38.44 REMARK 500 PHE A 15 142.10 70.27 REMARK 500 THR A 18 -150.98 -152.40 REMARK 500 CYS A 32 -68.36 -146.07 REMARK 500 ASN A 52 103.32 -164.72 REMARK 500 ASN A 58 39.53 37.63 REMARK 500 MET A 115 138.05 -173.25 REMARK 500 ASP A 127 -162.90 -110.25 REMARK 500 VAL A 206 -154.23 -131.81 REMARK 500 ALA B 33 -157.61 -137.15 REMARK 500 ASP B 45 -2.72 82.01 REMARK 500 ASN B 83 48.71 -144.79 REMARK 500 ILE B 107 -44.21 -142.23 REMARK 500 ASN B 169 16.52 -142.41 REMARK 500 ASP B 174 77.02 -104.32 REMARK 500 SER B 185 40.15 -102.07 REMARK 500 VAL B 201 133.97 -170.66 REMARK 500 SER B 235 -14.10 80.66 REMARK 500 LYS B 245 151.24 -49.22 REMARK 500 VAL B 252 -169.65 -117.19 REMARK 500 GLU B 271 160.87 81.54 REMARK 500 ASP C 85 27.81 -75.36 REMARK 500 LEU C 123 32.23 -97.63 REMARK 500 PRO C 143 -5.92 -54.50 REMARK 500 VAL C 235 -70.88 -134.72 REMARK 500 ASP C 236 176.96 72.93 REMARK 500 ILE C 250 126.28 78.08 REMARK 500 ASN C 256 109.08 -49.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 207 22.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 5CDD A 1 208 UNP B3TZF1 B3TZF1_9VIRU 701 908 DBREF 5CDD B 1 301 UNP D1FK67 D1FK67_9VIRU 400 700 DBREF 5CDD C 59 258 UNP D1FK67 D1FK67_9VIRU 71 270 SEQADV 5CDD ALA C 87 UNP D1FK67 ASN 99 CONFLICT SEQRES 1 A 208 ILE ASN ILE GLY ASN LYS THR ASN GLU ASN VAL ILE SER SEQRES 2 A 208 PHE PHE ASP SER THR ASP ALA GLU THR GLN ASN HIS ASP SEQRES 3 A 208 VAL LEU MET LYS GLY CYS GLY GLU PHE ILE VAL ASN LEU SEQRES 4 A 208 ARG THR LEU LEU ARG THR PHE ARG THR ILE THR ASP ASN SEQRES 5 A 208 TRP ILE LEU GLN ALA ASN THR LYS THR PRO ILE THR ASP SEQRES 6 A 208 LEU THR ASN THR THR ASP ALA GLN GLY ARG ASP TYR MET SEQRES 7 A 208 SER TYR LEU SER TYR LEU TYR ARG PHE TYR ARG GLY GLY SEQRES 8 A 208 ARG ARG TYR LYS PHE PHE ASN THR THR PRO LEU LYS GLN SEQRES 9 A 208 SER GLN THR CYS TYR ILE ARG SER PHE LEU MET PRO ARG SEQRES 10 A 208 ASN TYR SER ALA ASP GLU ILE ASN VAL ASP GLY PRO SER SEQRES 11 A 208 HIS ILE THR TYR PRO VAL ILE ASN PRO VAL HIS GLU VAL SEQRES 12 A 208 GLU VAL PRO PHE TYR SER GLN TYR ARG LYS ILE PRO ILE SEQRES 13 A 208 ALA SER THR SER ASP LYS GLY TYR ASP SER SER LEU MET SEQRES 14 A 208 TYR PHE SER ASN THR SER THR THR GLN ILE VAL ALA ARG SEQRES 15 A 208 ALA GLY ASN ASP ASP PHE THR PHE GLY TRP MET ILE GLY SEQRES 16 A 208 PRO PRO GLN LEU GLN GLY GLU THR ARG SER VAL VAL PRO SEQRES 1 B 301 SER LYS PRO ARG ASN GLN GLN GLN VAL CYS PRO LEU GLN SEQRES 2 B 301 ASN VAL PRO ALA TRP GLY TYR SER LEU TYR LYS GLY ILE SEQRES 3 B 301 ASP MET SER VAL PRO LEU ALA TYR ASP PRO ASN ASN GLU SEQRES 4 B 301 LEU GLY ASP LEU LYS ASP VAL PHE PRO SER ALA VAL ASP SEQRES 5 B 301 GLU MET ALA ILE GLY TYR VAL CYS GLY ASN PRO ALA VAL SEQRES 6 B 301 LYS HIS VAL LEU THR TRP LYS THR THR ASP ALA ILE GLN SEQRES 7 B 301 LYS PRO ILE ALA ASN GLY ASP ASP TRP GLY GLY VAL ILE SEQRES 8 B 301 PRO VAL GLY MET PRO CYS TYR SER LYS SER ILE ARG THR SEQRES 9 B 301 ILE LYS ILE SER GLU THR GLU ASN ARG GLU THR GLU VAL SEQRES 10 B 301 ILE ASP ALA ALA PRO CYS GLU TYR VAL ALA ASN MET PHE SEQRES 11 B 301 SER TYR TRP ARG ALA THR MET CYS TYR ARG ILE THR VAL SEQRES 12 B 301 VAL LYS THR ALA PHE HIS THR GLY ARG LEU GLU ILE PHE SEQRES 13 B 301 PHE GLU PRO GLY VAL ILE PRO VAL LYS PRO THR VAL ASN SEQRES 14 B 301 ASN ILE GLY PRO ASP GLN ASP GLN LEU THR GLY ALA VAL SEQRES 15 B 301 ALA PRO SER ASP ASN ASN TYR LYS TYR ILE LEU ASP LEU SEQRES 16 B 301 THR ASN ASP THR GLU VAL THR ILE ARG VAL PRO PHE VAL SEQRES 17 B 301 SER ASN LYS MET PHE LEU LYS THR ALA GLY ILE TYR GLY SEQRES 18 B 301 ALA ASN SER GLU ASN ASN TRP ASN PHE HIS GLU SER PHE SEQRES 19 B 301 SER GLY PHE LEU CYS ILE ARG PRO VAL THR LYS LEU MET SEQRES 20 B 301 ALA PRO ASP THR VAL SER ASP ASN VAL SER ILE VAL VAL SEQRES 21 B 301 TRP LYS TRP ALA GLU ASP VAL VAL VAL VAL GLU PRO LYS SEQRES 22 B 301 PRO LEU THR SER GLY PRO THR GLN VAL TYR ARG PRO PRO SEQRES 23 B 301 PRO THR ALA SER ALA ALA VAL GLU VAL LEU ASN VAL GLU SEQRES 24 B 301 LEU GLN SEQRES 1 C 200 ASP THR HIS SER ILE ILE GLN PHE LEU GLN ARG PRO VAL SEQRES 2 C 200 LEU ILE ASP ASN ILE GLU ILE ILE ALA GLY THR THR ALA SEQRES 3 C 200 ASP ALA ALA LYS PRO LEU SER ARG TYR VAL LEU ASP GLN SEQRES 4 C 200 GLN ASN SER GLN LYS TYR VAL ARG SER TRP THR LEU PRO SEQRES 5 C 200 SER THR VAL LEU LYS ALA GLY GLY LYS ALA GLN LYS LEU SEQRES 6 C 200 ALA ASN PHE LYS TYR LEU ARG CYS ASP VAL GLN VAL LYS SEQRES 7 C 200 LEU VAL LEU ASN ALA ASN PRO PHE VAL ALA GLY ARG MET SEQRES 8 C 200 TYR LEU ALA TYR SER PRO TYR ASP ASP LYS VAL ASP THR SEQRES 9 C 200 ALA ARG SER VAL LEU GLN THR SER ARG ALA GLY VAL THR SEQRES 10 C 200 GLY TYR PRO GLY VAL GLU LEU ASP PHE GLN LEU ASP ASN SEQRES 11 C 200 SER VAL GLU MET THR ILE PRO TYR ALA SER PHE GLN GLU SEQRES 12 C 200 ALA TYR ASP LEU VAL THR GLY THR GLU ASP PHE VAL GLN SEQRES 13 C 200 LEU TYR LEU PHE PRO ILE THR PRO VAL LEU GLY PRO LYS SEQRES 14 C 200 SER GLU SER GLU SER SER LYS VAL ASP ILE SER VAL TYR SEQRES 15 C 200 MET TRP LEU SER ASN ILE SER LEU VAL ILE PRO THR TYR SEQRES 16 C 200 ARG MET ASN PRO ASP FORMUL 4 HOH *13(H2 O) HELIX 1 AA1 ASP A 19 CYS A 32 1 14 HELIX 2 AA2 ASN A 38 ARG A 44 5 7 HELIX 3 AA3 ILE A 63 GLY A 74 1 12 HELIX 4 AA4 ASP A 76 TYR A 83 1 8 HELIX 5 AA5 SER A 120 ILE A 124 5 5 HELIX 6 AA6 ALA B 55 GLY B 61 1 7 HELIX 7 AA7 ALA B 121 ASN B 128 1 8 HELIX 8 AA8 GLN B 175 THR B 179 5 5 HELIX 9 AA9 ASN B 227 GLU B 232 1 6 HELIX 10 AB1 THR C 60 GLN C 68 1 9 HELIX 11 AB2 ASP C 96 SER C 100 5 5 HELIX 12 AB3 PRO C 110 ALA C 116 1 7 HELIX 13 AB4 ASP C 161 THR C 169 5 9 HELIX 14 AB5 SER C 170 THR C 175 1 6 SHEET 1 AA1 5 VAL A 11 SER A 13 0 SHEET 2 AA1 5 THR B 202 VAL B 205 1 O THR B 202 N ILE A 12 SHEET 3 AA1 5 TYR B 132 VAL B 144 -1 N MET B 137 O VAL B 205 SHEET 4 AA1 5 ASN B 255 VAL B 270 -1 O GLU B 265 N THR B 136 SHEET 5 AA1 5 ALA B 64 LYS B 72 -1 N LYS B 66 O VAL B 260 SHEET 1 AA2 4 VAL A 11 SER A 13 0 SHEET 2 AA2 4 THR B 202 VAL B 205 1 O THR B 202 N ILE A 12 SHEET 3 AA2 4 TYR B 132 VAL B 144 -1 N MET B 137 O VAL B 205 SHEET 4 AA2 4 LEU B 214 LYS B 215 -1 O LEU B 214 N TRP B 133 SHEET 1 AA3 5 ARG A 47 LEU A 55 0 SHEET 2 AA3 5 THR A 176 GLY A 184 -1 O VAL A 180 N ILE A 49 SHEET 3 AA3 5 ARG A 92 ASN A 98 -1 N ARG A 93 O ALA A 183 SHEET 4 AA3 5 VAL A 140 VAL A 145 -1 O VAL A 145 N ARG A 92 SHEET 5 AA3 5 VAL B 30 PRO B 31 1 O VAL B 30 N GLU A 144 SHEET 1 AA4 4 THR A 61 PRO A 62 0 SHEET 2 AA4 4 SER A 166 SER A 172 -1 O TYR A 170 N THR A 61 SHEET 3 AA4 4 ILE A 110 PRO A 116 -1 N ARG A 111 O PHE A 171 SHEET 4 AA4 4 HIS A 131 THR A 133 -1 O THR A 133 N ILE A 110 SHEET 1 AA5 3 ILE A 154 PRO A 155 0 SHEET 2 AA5 3 PHE A 87 ARG A 89 -1 N TYR A 88 O ILE A 154 SHEET 3 AA5 3 THR A 189 GLY A 191 -1 O GLY A 191 N PHE A 87 SHEET 1 AA6 4 SER B 101 SER B 108 0 SHEET 2 AA6 4 GLU B 111 ILE B 118 -1 O VAL B 117 N SER B 101 SHEET 3 AA6 4 GLN A 198 SER A 205 -1 N LEU A 199 O ILE B 118 SHEET 4 AA6 4 VAL B 282 TYR B 283 -1 O TYR B 283 N GLN A 198 SHEET 1 AA7 4 VAL B 90 PRO B 92 0 SHEET 2 AA7 4 GLY B 236 MET B 247 -1 O LEU B 238 N ILE B 91 SHEET 3 AA7 4 THR B 150 PRO B 159 -1 N ARG B 152 O VAL B 243 SHEET 4 AA7 4 TYR B 189 ASP B 194 -1 O TYR B 189 N PHE B 157 SHEET 1 AA8 2 VAL B 164 PRO B 166 0 SHEET 2 AA8 2 ILE B 171 PRO B 173 -1 O GLY B 172 N LYS B 165 SHEET 1 AA9 4 VAL C 71 ILE C 76 0 SHEET 2 AA9 4 ILE C 237 PRO C 251 -1 O VAL C 239 N ILE C 73 SHEET 3 AA9 4 PHE C 126 LEU C 139 -1 N GLN C 134 O TRP C 242 SHEET 4 AA9 4 SER C 189 ILE C 194 -1 O MET C 192 N VAL C 135 SHEET 1 AB1 4 VAL C 71 ILE C 76 0 SHEET 2 AB1 4 ILE C 237 PRO C 251 -1 O VAL C 239 N ILE C 73 SHEET 3 AB1 4 PHE C 126 LEU C 139 -1 N GLN C 134 O TRP C 242 SHEET 4 AB1 4 TYR C 203 ASP C 204 -1 O TYR C 203 N LEU C 129 SHEET 1 AB2 4 ARG C 105 LEU C 109 0 SHEET 2 AB2 4 VAL C 213 PRO C 219 -1 O LEU C 215 N TRP C 107 SHEET 3 AB2 4 ARG C 148 PRO C 155 -1 N TYR C 150 O PHE C 218 SHEET 4 AB2 4 GLY C 179 ASP C 183 -1 O VAL C 180 N LEU C 151 CISPEP 1 LEU C 109 PRO C 110 0 0.28 CRYST1 112.177 274.248 288.309 90.00 90.00 90.00 P 21 21 21 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008914 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003469 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.999996 -0.002302 0.001795 0.51308 MTRIX2 2 -0.002276 0.999895 0.014288 0.23527 MTRIX3 2 -0.001827 0.014284 -0.999896 -44.55749 MTRIX1 3 -0.999804 0.014332 0.013667 0.67950 MTRIX2 3 0.017286 0.294889 0.955375 21.00632 MTRIX3 3 0.009662 0.955424 -0.295078 -28.46054 MTRIX1 4 0.999793 -0.016922 -0.011294 -0.17733 MTRIX2 4 0.016017 0.312430 0.949806 20.82702 MTRIX3 4 -0.012544 -0.949790 0.312636 -15.87189 MTRIX1 5 0.999847 0.013551 -0.011080 -0.20949 MTRIX2 5 -0.014700 0.306336 -0.951810 -21.44370 MTRIX3 5 -0.009503 0.951827 0.306488 -15.12339 MTRIX1 6 -0.999776 -0.016671 0.013057 0.70902 MTRIX2 6 -0.017743 0.322893 -0.946269 -21.41007 MTRIX3 6 0.011559 -0.946289 -0.323117 -29.92929 MTRIX1 7 -0.999555 0.006623 0.029099 1.05069 MTRIX2 7 0.011319 -0.818080 0.574992 12.04954 MTRIX3 7 0.027614 0.575066 0.817641 -3.88384 MTRIX1 8 0.999605 -0.009860 -0.026302 -0.44777 MTRIX2 8 0.007539 -0.807835 0.589360 12.29299 MTRIX3 8 -0.027059 -0.589326 -0.807442 -40.58977 MTRIX1 9 -0.999603 -0.009822 0.026425 0.96559 MTRIX2 9 -0.007981 -0.800403 -0.599410 -13.96919 MTRIX3 9 0.027039 -0.599382 0.800006 -4.84497 MTRIX1 10 0.999583 0.009388 -0.027298 -0.65129 MTRIX2 10 -0.008465 -0.808733 -0.588116 -13.84410 MTRIX3 10 -0.027598 0.588102 -0.808316 -40.21170