HEADER OXIDOREDUCTASE 04-JUL-15 5CDT TITLE I220V HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH NAD AND TITLE 2 PENTAFLUOROBENZYL ALCOHOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE E CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: I220V SUBSTITUTION IN OTHERWISE WILD-TYPE ENZYME SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBPP/EQADH1E KEYWDS OXIDOREDUCTASE, ALCOHOL, ROSSMANN FOLD EXPDTA X-RAY DIFFRACTION AUTHOR B.V.PLAPP,K.SHANMUGANATHAM REVDAT 5 27-SEP-23 5CDT 1 LINK REVDAT 4 25-DEC-19 5CDT 1 REMARK REVDAT 3 03-JAN-18 5CDT 1 JRNL REVDAT 2 27-SEP-17 5CDT 1 SOURCE REMARK REVDAT 1 15-JUL-15 5CDT 0 JRNL AUTH K.K.SHANMUGANATHAM,R.S.WALLACE,A.T.LEE,B.V.PLAPP JRNL TITL CONTRIBUTION OF BURIED DISTAL AMINO ACID RESIDUES IN HORSE JRNL TITL 2 LIVER ALCOHOL DEHYDROGENASE TO STRUCTURE AND CATALYSIS. JRNL REF PROTEIN SCI. 2017 JRNL REFN ESSN 1469-896X JRNL PMID 29271062 JRNL DOI 10.1002/PRO.3370 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 77459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1134 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 835 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : -1.21000 REMARK 3 B12 (A**2) : -0.27000 REMARK 3 B13 (A**2) : 0.31000 REMARK 3 B23 (A**2) : -0.18000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5946 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5815 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8072 ; 2.039 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13511 ; 0.955 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 760 ; 6.568 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;38.453 ;24.686 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1057 ;13.316 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.342 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 946 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6506 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1184 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3015 ; 1.791 ; 2.040 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3014 ; 1.790 ; 2.039 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3771 ; 2.327 ; 3.056 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3772 ; 2.328 ; 3.056 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2931 ; 2.774 ; 2.344 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2932 ; 2.774 ; 2.345 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4296 ; 4.103 ; 3.389 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7498 ; 5.982 ;18.433 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6963 ; 5.553 ;17.336 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.80 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77459 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.230 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.15 REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4DWV REMARK 200 REMARK 200 REMARK: COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM AMMONIUM N REMARK 280 -[TRIS(HYDROXYMETHYL)METHYL]-2-AMINOETHANE SULFONATE, PH 6.7 (AT REMARK 280 25 C), 0.25 MM EDTA,10 MG/ML PROTEIN, 1 MM NAD+, 10 MM 2,3,4,5,6- REMARK 280 PENTAFLUOROBENZYL ALCOHOL, 12 TO 25 % 2-METHYL-2,4-PENTANEDIOL, REMARK 280 PH 7.0, MICRODIALYSIS, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 245 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 312 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 67 -5.49 -142.84 REMARK 500 CYS A 174 -71.99 -153.67 REMARK 500 ILE A 269 -60.58 -124.08 REMARK 500 ILE A 368 -88.59 -99.52 REMARK 500 HIS B 67 -6.41 -149.07 REMARK 500 THR B 143 -59.63 -120.71 REMARK 500 SER B 144 70.18 48.32 REMARK 500 CYS B 174 -73.27 -152.63 REMARK 500 GLU B 239 146.16 -170.34 REMARK 500 ILE B 269 -59.25 -126.70 REMARK 500 ILE B 368 -92.51 -93.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 954 DISTANCE = 6.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 106.9 REMARK 620 3 CYS A 174 SG 121.4 113.6 REMARK 620 4 PFB A 404 O1 104.6 99.2 108.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 108.7 REMARK 620 3 CYS A 103 SG 116.3 106.7 REMARK 620 4 CYS A 111 SG 103.3 120.6 101.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 67 NE2 107.0 REMARK 620 3 CYS B 174 SG 122.9 113.3 REMARK 620 4 PFB B 404 O1 105.8 104.3 101.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 106.9 REMARK 620 3 CYS B 103 SG 117.4 105.0 REMARK 620 4 CYS B 111 SG 103.1 120.2 105.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAJ A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PFB A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAJ B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PFB B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DWV RELATED DB: PDB REMARK 900 4DWV IS FOR WILD-TYPE COMPLEXES REMARK 900 RELATED ID: 5CDG RELATED DB: PDB REMARK 900 5CDG IS FOR I220F ENZYME REMARK 900 RELATED ID: 5CDS RELATED DB: PDB REMARK 900 5CDS IS FOR I220L ENZYME REMARK 900 RELATED ID: 5CDU RELATED DB: PDB DBREF 5CDT A 1 374 UNP P00327 ADH1E_HORSE 2 375 DBREF 5CDT B 1 374 UNP P00327 ADH1E_HORSE 2 375 SEQADV 5CDT VAL A 220 UNP P00327 ILE 221 ENGINEERED MUTATION SEQADV 5CDT VAL B 220 UNP P00327 ILE 221 ENGINEERED MUTATION SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU GLU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA THR GLY ILE CYS ARG SER ASP ASP HIS VAL SEQRES 5 A 374 VAL SER GLY THR LEU VAL THR PRO LEU PRO VAL ILE ALA SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER ILE GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL ARG PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 A 374 HIS PRO GLU GLY ASN PHE CYS LEU LYS ASN ASP LEU SER SEQRES 10 A 374 MET PRO ARG GLY THR MET GLN ASP GLY THR SER ARG PHE SEQRES 11 A 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ILE SER SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL LYS VAL ALA LYS VAL THR GLN GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL ILE SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE VAL GLY SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 VAL GLY ALA THR GLU CYS VAL ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU THR GLU MET SER ASN GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 A 374 THR MET VAL THR ALA LEU SER CYS CYS GLN GLU ALA TYR SEQRES 23 A 374 GLY VAL SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 A 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU SER GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 A 374 ASP SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE ALA LEU ASP PRO LEU ILE THR HIS VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 A 374 GLY GLU SER ILE ARG THR ILE LEU THR PHE SEQRES 1 B 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 B 374 LEU TRP GLU GLU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 B 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 B 374 MET VAL ALA THR GLY ILE CYS ARG SER ASP ASP HIS VAL SEQRES 5 B 374 VAL SER GLY THR LEU VAL THR PRO LEU PRO VAL ILE ALA SEQRES 6 B 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER ILE GLY GLU SEQRES 7 B 374 GLY VAL THR THR VAL ARG PRO GLY ASP LYS VAL ILE PRO SEQRES 8 B 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 B 374 HIS PRO GLU GLY ASN PHE CYS LEU LYS ASN ASP LEU SER SEQRES 10 B 374 MET PRO ARG GLY THR MET GLN ASP GLY THR SER ARG PHE SEQRES 11 B 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 B 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ILE SER SEQRES 13 B 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 B 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 B 374 ALA VAL LYS VAL ALA LYS VAL THR GLN GLY SER THR CYS SEQRES 16 B 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL ILE SEQRES 17 B 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE VAL GLY SEQRES 18 B 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 B 374 VAL GLY ALA THR GLU CYS VAL ASN PRO GLN ASP TYR LYS SEQRES 20 B 374 LYS PRO ILE GLN GLU VAL LEU THR GLU MET SER ASN GLY SEQRES 21 B 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 B 374 THR MET VAL THR ALA LEU SER CYS CYS GLN GLU ALA TYR SEQRES 23 B 374 GLY VAL SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 B 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU SER GLY ARG SEQRES 25 B 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 B 374 ASP SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 B 374 LYS PHE ALA LEU ASP PRO LEU ILE THR HIS VAL LEU PRO SEQRES 28 B 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 B 374 GLY GLU SER ILE ARG THR ILE LEU THR PHE HET ZN A 401 1 HET ZN A 402 1 HET NAJ A 403 44 HET PFB A 404 13 HET MRD A 405 8 HET MRD A 406 8 HET ZN B 401 1 HET ZN B 402 1 HET NAJ B 403 44 HET PFB B 404 13 HETNAM ZN ZINC ION HETNAM NAJ NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) HETNAM PFB 2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAJ 2(C21 H27 N7 O14 P2) FORMUL 6 PFB 2(C7 H3 F5 O) FORMUL 7 MRD 2(C6 H14 O2) FORMUL 13 HOH *835(H2 O) HELIX 1 AA1 CYS A 46 GLY A 55 1 10 HELIX 2 AA2 CYS A 100 HIS A 105 1 6 HELIX 3 AA3 PRO A 165 CYS A 170 1 6 HELIX 4 AA4 LEU A 171 GLY A 173 5 3 HELIX 5 AA5 CYS A 174 LYS A 185 1 12 HELIX 6 AA6 GLY A 201 ALA A 214 1 14 HELIX 7 AA7 ASN A 225 ASP A 227 5 3 HELIX 8 AA8 LYS A 228 GLY A 236 1 9 HELIX 9 AA9 ASN A 242 TYR A 246 5 5 HELIX 10 AB1 PRO A 249 SER A 258 1 10 HELIX 11 AB2 ARG A 271 CYS A 282 1 12 HELIX 12 AB3 PRO A 305 SER A 310 1 6 HELIX 13 AB4 ILE A 318 PHE A 322 5 5 HELIX 14 AB5 LYS A 323 ALA A 337 1 15 HELIX 15 AB6 LEU A 342 PRO A 344 5 3 HELIX 16 AB7 LYS A 354 SER A 364 1 11 HELIX 17 AB8 CYS B 46 GLY B 55 1 10 HELIX 18 AB9 CYS B 100 HIS B 105 1 6 HELIX 19 AC1 PRO B 165 CYS B 170 1 6 HELIX 20 AC2 LEU B 171 GLY B 173 5 3 HELIX 21 AC3 CYS B 174 LYS B 185 1 12 HELIX 22 AC4 GLY B 201 ALA B 214 1 14 HELIX 23 AC5 ASN B 225 ASP B 227 5 3 HELIX 24 AC6 LYS B 228 GLY B 236 1 9 HELIX 25 AC7 ASN B 242 TYR B 246 5 5 HELIX 26 AC8 PRO B 249 SER B 258 1 10 HELIX 27 AC9 ARG B 271 CYS B 282 1 12 HELIX 28 AD1 PRO B 305 SER B 310 1 6 HELIX 29 AD2 ILE B 318 PHE B 322 5 5 HELIX 30 AD3 LYS B 323 ALA B 337 1 15 HELIX 31 AD4 LEU B 342 PRO B 344 5 3 HELIX 32 AD5 LYS B 354 SER B 364 1 11 SHEET 1 AA1 4 ILE A 7 VAL A 13 0 SHEET 2 AA1 4 SER A 22 VAL A 28 -1 O VAL A 28 N ILE A 7 SHEET 3 AA1 4 PHE A 130 CYS A 132 -1 O THR A 131 N GLU A 27 SHEET 4 AA1 4 LYS A 135 ILE A 137 -1 O LYS A 135 N CYS A 132 SHEET 1 AA2 5 TYR A 149 ASP A 153 0 SHEET 2 AA2 5 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 AA2 5 GLU A 68 ILE A 76 -1 O ILE A 72 N LYS A 39 SHEET 4 AA2 5 LYS A 88 PRO A 91 -1 O VAL A 89 N GLY A 71 SHEET 5 AA2 5 VAL A 157 LYS A 159 -1 O ALA A 158 N ILE A 90 SHEET 1 AA3 4 TYR A 149 ASP A 153 0 SHEET 2 AA3 4 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 AA3 4 ARG A 369 THR A 373 -1 O LEU A 372 N THR A 43 SHEET 4 AA3 4 ILE A 346 PRO A 351 1 N LEU A 350 O ILE A 371 SHEET 1 AA412 GLU A 239 VAL A 241 0 SHEET 2 AA412 ARG A 218 VAL A 222 1 N GLY A 221 O VAL A 241 SHEET 3 AA412 THR A 194 PHE A 198 1 N CYS A 195 O VAL A 220 SHEET 4 AA412 PHE A 264 GLU A 267 1 O PHE A 266 N PHE A 198 SHEET 5 AA412 VAL A 288 ILE A 291 1 O VAL A 290 N SER A 265 SHEET 6 AA412 THR A 313 GLY A 316 1 O LYS A 315 N ILE A 291 SHEET 7 AA412 THR B 313 GLY B 316 -1 O TRP B 314 N TRP A 314 SHEET 8 AA412 VAL B 288 ILE B 291 1 N ILE B 291 O LYS B 315 SHEET 9 AA412 PHE B 264 GLU B 267 1 N SER B 265 O VAL B 290 SHEET 10 AA412 THR B 194 PHE B 198 1 N PHE B 198 O PHE B 266 SHEET 11 AA412 ARG B 218 VAL B 222 1 O VAL B 220 N CYS B 195 SHEET 12 AA412 GLU B 239 VAL B 241 1 O VAL B 241 N GLY B 221 SHEET 1 AA5 2 LEU A 301 MET A 303 0 SHEET 2 AA5 2 LEU B 301 MET B 303 -1 O MET B 303 N LEU A 301 SHEET 1 AA6 4 ILE B 7 VAL B 13 0 SHEET 2 AA6 4 SER B 22 VAL B 28 -1 O SER B 22 N VAL B 13 SHEET 3 AA6 4 PHE B 130 CYS B 132 -1 O THR B 131 N GLU B 27 SHEET 4 AA6 4 LYS B 135 ILE B 137 -1 O LYS B 135 N CYS B 132 SHEET 1 AA7 5 TYR B 149 ASP B 153 0 SHEET 2 AA7 5 GLU B 35 GLY B 44 -1 N ILE B 38 O THR B 150 SHEET 3 AA7 5 ALA B 69 ILE B 76 -1 O ILE B 72 N LYS B 39 SHEET 4 AA7 5 LYS B 88 PRO B 91 -1 O VAL B 89 N GLY B 71 SHEET 5 AA7 5 VAL B 157 LYS B 159 -1 O ALA B 158 N ILE B 90 SHEET 1 AA8 4 TYR B 149 ASP B 153 0 SHEET 2 AA8 4 GLU B 35 GLY B 44 -1 N ILE B 38 O THR B 150 SHEET 3 AA8 4 ARG B 369 THR B 373 -1 O LEU B 372 N THR B 43 SHEET 4 AA8 4 ILE B 346 PRO B 351 1 N LEU B 350 O THR B 373 LINK SG CYS A 46 ZN ZN A 401 1555 1555 2.30 LINK NE2 HIS A 67 ZN ZN A 401 1555 1555 2.09 LINK SG CYS A 97 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 100 ZN ZN A 402 1555 1555 2.33 LINK SG CYS A 103 ZN ZN A 402 1555 1555 2.36 LINK SG CYS A 111 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 174 ZN ZN A 401 1555 1555 2.30 LINK ZN ZN A 401 O1 PFB A 404 1555 1555 1.99 LINK SG CYS B 46 ZN ZN B 401 1555 1555 2.31 LINK NE2 HIS B 67 ZN ZN B 401 1555 1555 2.16 LINK SG CYS B 97 ZN ZN B 402 1555 1555 2.38 LINK SG CYS B 100 ZN ZN B 402 1555 1555 2.36 LINK SG CYS B 103 ZN ZN B 402 1555 1555 2.34 LINK SG CYS B 111 ZN ZN B 402 1555 1555 2.30 LINK SG CYS B 174 ZN ZN B 401 1555 1555 2.29 LINK ZN ZN B 401 O1 PFB B 404 1555 1555 2.00 CISPEP 1 LEU A 61 PRO A 62 0 -1.14 CISPEP 2 LEU B 61 PRO B 62 0 -0.49 SITE 1 AC1 5 CYS A 46 HIS A 67 CYS A 174 NAJ A 403 SITE 2 AC1 5 PFB A 404 SITE 1 AC2 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC3 32 ARG A 47 SER A 48 HIS A 51 CYS A 174 SITE 2 AC3 32 THR A 178 GLY A 199 GLY A 201 GLY A 202 SITE 3 AC3 32 VAL A 203 ASP A 223 ILE A 224 LYS A 228 SITE 4 AC3 32 VAL A 268 ILE A 269 VAL A 292 GLY A 293 SITE 5 AC3 32 VAL A 294 ALA A 317 ILE A 318 PHE A 319 SITE 6 AC3 32 ARG A 369 ZN A 401 PFB A 404 HOH A 543 SITE 7 AC3 32 HOH A 584 HOH A 590 HOH A 597 HOH A 653 SITE 8 AC3 32 HOH A 689 HOH A 765 HOH A 786 HOH A 794 SITE 1 AC4 13 CYS A 46 SER A 48 LEU A 57 HIS A 67 SITE 2 AC4 13 PHE A 93 LEU A 116 PHE A 140 LEU A 141 SITE 3 AC4 13 CYS A 174 VAL A 294 ZN A 401 NAJ A 403 SITE 4 AC4 13 LEU B 309 SITE 1 AC5 8 ASP A 297 GLN A 299 LYS A 338 PHE A 340 SITE 2 AC5 8 HOH A 503 HOH A 556 HOH A 570 HOH A 658 SITE 1 AC6 6 ARG A 218 THR A 238 GLU A 239 HOH A 515 SITE 2 AC6 6 GLU B 239 HOH B 504 SITE 1 AC7 5 CYS B 46 HIS B 67 CYS B 174 NAJ B 403 SITE 2 AC7 5 PFB B 404 SITE 1 AC8 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC9 32 ARG B 47 SER B 48 HIS B 51 CYS B 174 SITE 2 AC9 32 THR B 178 GLY B 199 GLY B 201 GLY B 202 SITE 3 AC9 32 VAL B 203 ASP B 223 ILE B 224 LYS B 228 SITE 4 AC9 32 VAL B 268 ILE B 269 VAL B 292 GLY B 293 SITE 5 AC9 32 VAL B 294 ALA B 317 ILE B 318 PHE B 319 SITE 6 AC9 32 LEU B 362 ARG B 369 ZN B 401 PFB B 404 SITE 7 AC9 32 HOH B 502 HOH B 563 HOH B 589 HOH B 602 SITE 8 AC9 32 HOH B 605 HOH B 734 HOH B 756 HOH B 770 SITE 1 AD1 14 LEU A 309 CYS B 46 SER B 48 LEU B 57 SITE 2 AD1 14 HIS B 67 PHE B 93 LEU B 116 PHE B 140 SITE 3 AD1 14 LEU B 141 CYS B 174 VAL B 294 ILE B 318 SITE 4 AD1 14 ZN B 401 NAJ B 403 CRYST1 44.300 51.500 92.350 91.92 103.09 110.17 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022573 0.008292 0.006308 0.00000 SCALE2 0.000000 0.020686 0.002544 0.00000 SCALE3 0.000000 0.000000 0.011201 0.00000