HEADER TOXIN 06-JUL-15 5CEG TITLE X-RAY STRUCTURE OF TOXIN/ANTI-TOXIN COMPLEX FROM MESORHIZOBIUM TITLE 2 OPPORTUNISTUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADDICTION MODULE ANTIDOTE PROTEIN, COPG/ARC/METJ FAMILY; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PLASMID STABILIZATION SYSTEM; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: HIS TAGGED PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM OPPORTUNISTUM (STRAIN LMG 24607 / SOURCE 3 HAMBI 3007 / WSM2075); SOURCE 4 ORGANISM_TAXID: 536019; SOURCE 5 STRAIN: LMG 24607 / HAMBI 3007 / WSM2075; SOURCE 6 GENE: MESOP_5599; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETDUET-1; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: MESORHIZOBIUM OPPORTUNISTUM (STRAIN LMG 24607 / SOURCE 14 HAMBI 3007 / WSM2075); SOURCE 15 ORGANISM_TAXID: 536019; SOURCE 16 STRAIN: LMG 24607 / HAMBI 3007 / WSM2075; SOURCE 17 GENE: MESOP_5598; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS TOXIN ANTI-TOXIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR C.D.AAKRE,J.HERROU,S.CROSSON,M.T.LAUB REVDAT 4 06-MAR-24 5CEG 1 LINK REVDAT 3 20-NOV-19 5CEG 1 REMARK REVDAT 2 13-SEP-17 5CEG 1 REMARK REVDAT 1 11-NOV-15 5CEG 0 JRNL AUTH C.D.AAKRE,J.HERROU,T.N.PHUNG,B.S.PERCHUK,S.CROSSON,M.T.LAUB JRNL TITL EVOLVING NEW PROTEIN-PROTEIN INTERACTION SPECIFICITY THROUGH JRNL TITL 2 PROMISCUOUS INTERMEDIATES. JRNL REF CELL V. 163 594 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 26478181 JRNL DOI 10.1016/J.CELL.2015.09.055 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 73683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7152 - 4.7637 1.00 5071 137 0.1716 0.2069 REMARK 3 2 4.7637 - 3.7836 1.00 5118 141 0.1304 0.1655 REMARK 3 3 3.7836 - 3.3060 1.00 5053 141 0.1475 0.1401 REMARK 3 4 3.3060 - 3.0041 1.00 5078 146 0.1540 0.1624 REMARK 3 5 3.0041 - 2.7889 1.00 5105 140 0.1675 0.2022 REMARK 3 6 2.7889 - 2.6246 1.00 5059 141 0.1761 0.2357 REMARK 3 7 2.6246 - 2.4932 1.00 5111 143 0.1662 0.1693 REMARK 3 8 2.4932 - 2.3847 1.00 5018 142 0.1624 0.1901 REMARK 3 9 2.3847 - 2.2930 1.00 5098 145 0.1581 0.2052 REMARK 3 10 2.2930 - 2.2139 1.00 5117 135 0.1658 0.1900 REMARK 3 11 2.2139 - 2.1447 1.00 5057 139 0.1587 0.1788 REMARK 3 12 2.1447 - 2.0834 1.00 5044 144 0.1593 0.2088 REMARK 3 13 2.0834 - 2.0285 1.00 5131 146 0.1625 0.1999 REMARK 3 14 2.0285 - 1.9791 1.00 5034 139 0.1684 0.1843 REMARK 3 15 1.9791 - 1.9341 1.00 5117 143 0.1789 0.1964 REMARK 3 16 1.9341 - 1.8929 1.00 5038 138 0.1834 0.2043 REMARK 3 17 1.8929 - 1.8551 1.00 5139 143 0.1917 0.1950 REMARK 3 18 1.8551 - 1.8201 1.00 5105 139 0.1963 0.2640 REMARK 3 19 1.8201 - 1.7876 1.00 5028 142 0.2038 0.2010 REMARK 3 20 1.7876 - 1.7573 1.00 5108 144 0.2038 0.2760 REMARK 3 21 1.7573 - 1.7289 1.00 5077 135 0.2089 0.2917 REMARK 3 22 1.7289 - 1.7023 1.00 5136 147 0.2189 0.2331 REMARK 3 23 1.7023 - 1.6773 1.00 5065 142 0.2198 0.2874 REMARK 3 24 1.6773 - 1.6537 1.00 5061 136 0.2185 0.2293 REMARK 3 25 1.6537 - 1.6313 1.00 5148 144 0.2280 0.2294 REMARK 3 26 1.6313 - 1.6101 1.00 5058 138 0.2396 0.2674 REMARK 3 27 1.6101 - 1.5900 1.00 5064 139 0.2512 0.3212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3259 REMARK 3 ANGLE : 1.068 4433 REMARK 3 CHIRALITY : 0.046 488 REMARK 3 PLANARITY : 0.005 585 REMARK 3 DIHEDRAL : 12.047 1297 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.3.6.3 REMARK 200 DATA SCALING SOFTWARE : XIA2 0.3.6.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 31.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SPEAR-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 MM SODIUM ACETATE, 100 MM SODIUM REMARK 280 CITRATE PH5.5, 20% PEG 4000, 20 % GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.59000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.42000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.71000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.59000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.42000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.71000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.59000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.42000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.71000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.59000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.42000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.71000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -43.18000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -118.84000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 225 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 291 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 239 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 88 REMARK 465 PRO A 89 REMARK 465 PRO A 90 REMARK 465 ASN A 91 REMARK 465 GLY A 92 REMARK 465 ARG A 93 REMARK 465 MET B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 SER B -3 REMARK 465 GLN B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 MET C 1 REMARK 465 GLU C 87 REMARK 465 VAL C 88 REMARK 465 PRO C 89 REMARK 465 PRO C 90 REMARK 465 ASN C 91 REMARK 465 GLY C 92 REMARK 465 ARG C 93 REMARK 465 MET D -13 REMARK 465 GLY D -12 REMARK 465 SER D -11 REMARK 465 SER D -10 REMARK 465 HIS D -9 REMARK 465 HIS D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 SER D -3 REMARK 465 GLN D -2 REMARK 465 ASP D -1 REMARK 465 PRO D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 280 O HOH D 327 2.04 REMARK 500 O HOH B 355 O HOH B 410 2.05 REMARK 500 O HOH A 285 O HOH D 349 2.14 REMARK 500 O HOH B 340 O HOH B 389 2.14 REMARK 500 O HOH B 302 O HOH B 361 2.14 REMARK 500 O HOH B 378 O HOH C 286 2.15 REMARK 500 OE1 GLU C 47 O HOH C 201 2.18 REMARK 500 O HOH B 396 O HOH B 403 2.19 REMARK 500 O HOH D 316 O HOH D 319 2.19 REMARK 500 OD1 ASP D 35 O HOH D 301 2.19 REMARK 500 O HOH B 309 O HOH C 210 2.19 REMARK 500 O HOH D 301 O HOH D 357 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 284 O HOH B 346 1455 2.16 REMARK 500 O HOH C 258 O HOH D 392 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 57 -70.43 -83.80 REMARK 500 ILE D 57 -70.30 -85.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 427 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 428 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH C 319 DISTANCE = 6.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 226 O REMARK 620 2 GLY B 95 O 167.8 REMARK 620 3 LEU B 99 O 80.6 88.0 REMARK 620 4 LEU B 102 O 97.3 86.8 89.5 REMARK 620 5 PHE B 103 O 95.7 96.2 170.9 82.8 REMARK 620 6 HOH B 341 O 79.0 99.2 101.2 167.9 86.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD D 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD D 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD D 207 DBREF 5CEG A 1 93 UNP F7YBW8 F7YBW8_MESOW 1 93 DBREF 5CEG B 1 103 UNP F7YBW7 F7YBW7_MESOW 1 103 DBREF 5CEG C 1 93 UNP F7YBW8 F7YBW8_MESOW 1 93 DBREF 5CEG D 1 103 UNP F7YBW7 F7YBW7_MESOW 1 103 SEQADV 5CEG MET B -13 UNP F7YBW7 INITIATING METHIONINE SEQADV 5CEG GLY B -12 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG SER B -11 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG SER B -10 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS B -9 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS B -8 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS B -7 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS B -6 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS B -5 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS B -4 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG SER B -3 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG GLN B -2 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG ASP B -1 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG PRO B 0 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG MET D -13 UNP F7YBW7 INITIATING METHIONINE SEQADV 5CEG GLY D -12 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG SER D -11 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG SER D -10 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS D -9 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS D -8 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS D -7 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS D -6 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS D -5 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG HIS D -4 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG SER D -3 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG GLN D -2 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG ASP D -1 UNP F7YBW7 EXPRESSION TAG SEQADV 5CEG PRO D 0 UNP F7YBW7 EXPRESSION TAG SEQRES 1 A 93 MET ALA ASN VAL GLU LYS MET SER VAL ALA VAL THR PRO SEQRES 2 A 93 GLN GLN ALA ALA VAL MET ARG GLU ALA VAL GLU ALA GLY SEQRES 3 A 93 GLU TYR ALA THR ALA SER GLU ILE VAL ARG GLU ALA VAL SEQRES 4 A 93 ARG ASP TRP LEU ALA LYS ARG GLU LEU ARG HIS ASP ASP SEQRES 5 A 93 ILE ARG ARG LEU ARG GLN LEU TRP ASP GLU GLY LYS ALA SEQRES 6 A 93 SER GLY ARG PRO GLU PRO VAL ASP PHE ASP ALA LEU ARG SEQRES 7 A 93 LYS GLU ALA ARG GLN LYS LEU THR GLU VAL PRO PRO ASN SEQRES 8 A 93 GLY ARG SEQRES 1 B 117 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 117 PRO MET ALA VAL ARG LEU VAL TRP SER PRO THR ALA LYS SEQRES 3 B 117 ALA ASP LEU ILE ASP ILE TYR VAL MET ILE GLY SER GLU SEQRES 4 B 117 ASN ILE ARG ALA ALA ASP ARG TYR TYR ASP GLN LEU GLU SEQRES 5 B 117 ALA ARG ALA LEU GLN LEU ALA ASP GLN PRO ARG MET GLY SEQRES 6 B 117 VAL ARG ARG PRO ASP ILE ARG PRO SER ALA ARG MET LEU SEQRES 7 B 117 VAL GLU ALA PRO PHE VAL LEU LEU TYR GLU THR VAL PRO SEQRES 8 B 117 ASP THR ASP ASP GLY PRO VAL GLU TRP VAL GLU ILE VAL SEQRES 9 B 117 ARG VAL VAL ASP GLY ARG ARG ASP LEU ASN ARG LEU PHE SEQRES 1 C 93 MET ALA ASN VAL GLU LYS MET SER VAL ALA VAL THR PRO SEQRES 2 C 93 GLN GLN ALA ALA VAL MET ARG GLU ALA VAL GLU ALA GLY SEQRES 3 C 93 GLU TYR ALA THR ALA SER GLU ILE VAL ARG GLU ALA VAL SEQRES 4 C 93 ARG ASP TRP LEU ALA LYS ARG GLU LEU ARG HIS ASP ASP SEQRES 5 C 93 ILE ARG ARG LEU ARG GLN LEU TRP ASP GLU GLY LYS ALA SEQRES 6 C 93 SER GLY ARG PRO GLU PRO VAL ASP PHE ASP ALA LEU ARG SEQRES 7 C 93 LYS GLU ALA ARG GLN LYS LEU THR GLU VAL PRO PRO ASN SEQRES 8 C 93 GLY ARG SEQRES 1 D 117 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 D 117 PRO MET ALA VAL ARG LEU VAL TRP SER PRO THR ALA LYS SEQRES 3 D 117 ALA ASP LEU ILE ASP ILE TYR VAL MET ILE GLY SER GLU SEQRES 4 D 117 ASN ILE ARG ALA ALA ASP ARG TYR TYR ASP GLN LEU GLU SEQRES 5 D 117 ALA ARG ALA LEU GLN LEU ALA ASP GLN PRO ARG MET GLY SEQRES 6 D 117 VAL ARG ARG PRO ASP ILE ARG PRO SER ALA ARG MET LEU SEQRES 7 D 117 VAL GLU ALA PRO PHE VAL LEU LEU TYR GLU THR VAL PRO SEQRES 8 D 117 ASP THR ASP ASP GLY PRO VAL GLU TRP VAL GLU ILE VAL SEQRES 9 D 117 ARG VAL VAL ASP GLY ARG ARG ASP LEU ASN ARG LEU PHE HET GOL A 101 6 HET IOD A 102 1 HET IOD A 103 1 HET GOL B 201 6 HET GOL B 202 6 HET NA B 203 1 HET IOD B 204 1 HET GOL C 101 6 HET IOD C 102 1 HET GOL D 201 6 HET GOL D 202 6 HET GOL D 203 6 HET IOD D 204 1 HET IOD D 205 1 HET IOD D 206 1 HET IOD D 207 1 HETNAM GOL GLYCEROL HETNAM IOD IODIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 7(C3 H8 O3) FORMUL 6 IOD 8(I 1-) FORMUL 10 NA NA 1+ FORMUL 21 HOH *483(H2 O) HELIX 1 AA1 THR A 12 ALA A 25 1 14 HELIX 2 AA2 THR A 30 ALA A 65 1 36 HELIX 3 AA3 ASP A 73 THR A 86 1 14 HELIX 4 AA4 SER B 8 SER B 24 1 17 HELIX 5 AA5 ASN B 26 GLN B 47 1 22 HELIX 6 AA6 GLY B 95 LEU B 99 1 5 HELIX 7 AA7 THR C 12 ALA C 25 1 14 HELIX 8 AA8 THR C 30 SER C 66 1 37 HELIX 9 AA9 ASP C 73 LEU C 85 1 13 HELIX 10 AB1 SER D 8 SER D 24 1 17 HELIX 11 AB2 ASN D 26 GLN D 47 1 22 HELIX 12 AB3 GLY D 95 LEU D 99 1 5 SHEET 1 AA1 5 ARG B 4 TRP B 7 0 SHEET 2 AA1 5 TRP B 86 ASP B 94 1 O ILE B 89 N VAL B 6 SHEET 3 AA1 5 PHE B 69 VAL B 76 -1 N VAL B 70 O VAL B 93 SHEET 4 AA1 5 ARG B 62 GLU B 66 -1 N LEU B 64 O LEU B 71 SHEET 5 AA1 5 VAL B 52 ARG B 53 -1 N VAL B 52 O MET B 63 SHEET 1 AA2 5 ARG D 4 TRP D 7 0 SHEET 2 AA2 5 TRP D 86 ASP D 94 1 O ILE D 89 N VAL D 6 SHEET 3 AA2 5 PHE D 69 VAL D 76 -1 N VAL D 70 O VAL D 93 SHEET 4 AA2 5 ARG D 62 GLU D 66 -1 N GLU D 66 O PHE D 69 SHEET 5 AA2 5 VAL D 52 ARG D 53 -1 N VAL D 52 O MET D 63 LINK O HOH A 226 NA NA B 203 2445 1555 2.49 LINK O GLY B 95 NA NA B 203 1555 1555 2.52 LINK O LEU B 99 NA NA B 203 1555 1555 2.35 LINK O LEU B 102 NA NA B 203 1555 1555 2.45 LINK O BPHE B 103 NA NA B 203 1555 1555 2.46 LINK NA NA B 203 O HOH B 341 1555 1555 2.41 CISPEP 1 ALA B 67 PRO B 68 0 3.66 CISPEP 2 VAL B 76 PRO B 77 0 -1.69 CISPEP 3 ALA D 67 PRO D 68 0 5.51 CISPEP 4 VAL D 76 PRO D 77 0 0.52 SITE 1 AC1 7 ARG A 46 GLU A 47 HIS A 50 ARG A 54 SITE 2 AC1 7 HOH A 216 HOH A 241 GLU C 62 SITE 1 AC2 1 ARG A 57 SITE 1 AC3 1 TRP A 60 SITE 1 AC4 8 GLU A 27 TYR A 28 GLU A 37 ARG A 49 SITE 2 AC4 8 HOH A 223 ARG B 96 HOH B 315 HOH B 376 SITE 1 AC5 6 GLU A 33 ARG A 36 ASP B 94 ARG B 96 SITE 2 AC5 6 HOH B 302 HOH B 352 SITE 1 AC6 6 HOH A 226 GLY B 95 LEU B 99 LEU B 102 SITE 2 AC6 6 PHE B 103 HOH B 341 SITE 1 AC7 2 ARG B 54 HOH C 208 SITE 1 AC8 7 ILE A 53 ARG A 54 ARG A 57 ASP C 61 SITE 2 AC8 7 LYS C 64 HOH C 228 HOH C 238 SITE 1 AC9 3 ARG B 101 LYS C 45 ARG C 49 SITE 1 AD1 8 ARG A 49 ASP A 52 ILE A 53 ARG D 54 SITE 2 AD1 8 ARG D 101 LEU D 102 PHE D 103 HOH D 356 SITE 1 AD2 6 GLU C 33 ARG C 36 ASP D 94 ARG D 96 SITE 2 AD2 6 ARG D 97 HOH D 348 SITE 1 AD3 8 ASP D 14 VAL D 92 VAL D 93 ASP D 94 SITE 2 AD3 8 ASP D 98 HOH D 320 HOH D 321 HOH D 363 SITE 1 AD4 1 LEU D 102 SITE 1 AD5 1 ARG D 49 SITE 1 AD6 1 ARG D 101 CRYST1 43.180 118.840 211.420 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004730 0.00000