HEADER IMMUNE SYSTEM 07-JUL-15 5CEX TITLE CRYSTAL STRUCTURE OF FAB 32H+109L, A PUTATIVE PRECURSOR OF THE PGT121 TITLE 2 FAMILY OF POTENT HIV-1 ANTIBODIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY 9H+3L FAB LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 9H+3L FAB HEAVY CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV-1, IMMUNE SYSTEM, ANTIBODY EXPDTA X-RAY DIFFRACTION AUTHOR F.GARCES,I.A.WILSON REVDAT 3 27-SEP-23 5CEX 1 JRNL REMARK REVDAT 2 06-JAN-16 5CEX 1 JRNL REVDAT 1 23-DEC-15 5CEX 0 JRNL AUTH F.GARCES,J.H.LEE,N.DE VAL,A.TORRENTS DE LA PENA,L.KONG, JRNL AUTH 2 C.PUCHADES,Y.HUA,R.L.STANFIELD,D.R.BURTON,J.P.MOORE, JRNL AUTH 3 R.W.SANDERS,A.B.WARD,I.A.WILSON JRNL TITL AFFINITY MATURATION OF A POTENT FAMILY OF HIV ANTIBODIES IS JRNL TITL 2 PRIMARILY FOCUSED ON ACCOMMODATING OR AVOIDING GLYCANS. JRNL REF IMMUNITY V. 43 1053 2015 JRNL REFN ISSN 1074-7613 JRNL PMID 26682982 JRNL DOI 10.1016/J.IMMUNI.2015.11.007 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 62596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4599 - 5.9810 1.00 2709 125 0.1878 0.2388 REMARK 3 2 5.9810 - 4.7488 0.99 2633 155 0.1821 0.2122 REMARK 3 3 4.7488 - 4.1490 0.99 2621 154 0.1645 0.2113 REMARK 3 4 4.1490 - 3.7698 0.99 2636 147 0.1827 0.2051 REMARK 3 5 3.7698 - 3.4997 0.99 2600 133 0.1820 0.2046 REMARK 3 6 3.4997 - 3.2934 0.99 2621 145 0.1879 0.2269 REMARK 3 7 3.2934 - 3.1285 0.99 2618 132 0.1950 0.2594 REMARK 3 8 3.1285 - 2.9924 0.99 2610 145 0.2144 0.2615 REMARK 3 9 2.9924 - 2.8772 0.99 2577 145 0.2079 0.3070 REMARK 3 10 2.8772 - 2.7779 0.99 2577 145 0.2204 0.2853 REMARK 3 11 2.7779 - 2.6911 0.98 2584 151 0.2175 0.2948 REMARK 3 12 2.6911 - 2.6142 0.99 2616 128 0.2220 0.2773 REMARK 3 13 2.6142 - 2.5453 0.99 2598 125 0.2309 0.2772 REMARK 3 14 2.5453 - 2.4832 0.98 2575 152 0.2265 0.2968 REMARK 3 15 2.4832 - 2.4268 0.98 2523 156 0.2265 0.2754 REMARK 3 16 2.4268 - 2.3752 0.99 2630 122 0.2298 0.2681 REMARK 3 17 2.3752 - 2.3276 0.97 2564 136 0.2294 0.2727 REMARK 3 18 2.3276 - 2.2837 0.99 2570 124 0.2339 0.2707 REMARK 3 19 2.2837 - 2.2429 0.97 2598 131 0.2431 0.2585 REMARK 3 20 2.2429 - 2.2049 0.98 2569 112 0.2440 0.2721 REMARK 3 21 2.2049 - 2.1693 0.97 2582 143 0.2339 0.2634 REMARK 3 22 2.1693 - 2.1360 0.98 2513 134 0.2545 0.2996 REMARK 3 23 2.1360 - 2.1050 0.87 2302 130 0.2658 0.2959 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6979 REMARK 3 ANGLE : 1.342 9499 REMARK 3 CHIRALITY : 0.061 1065 REMARK 3 PLANARITY : 0.007 1203 REMARK 3 DIHEDRAL : 14.224 2505 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH=6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62628 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R26 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% (W/V) PEG 1000, 28% (V/V) PEG 600, REMARK 280 10% (V/V) GLYCEROL AND 0.1 M MES PH 6.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.14K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.36300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 TYR A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 SER A 67A REMARK 465 ASN A 67B REMARK 465 PHE A 67C REMARK 465 GLY A 67D REMARK 465 GLU A 211 REMARK 465 CYS A 212 REMARK 465 SER A 213 REMARK 465 SER B 213 REMARK 465 CYS B 214 REMARK 465 ASP B 215 REMARK 465 SER C 2 REMARK 465 TYR C 3 REMARK 465 VAL C 4 REMARK 465 CYS C 212 REMARK 465 SER C 213 REMARK 465 LYS D 127 REMARK 465 SER D 128 REMARK 465 CYS D 214 REMARK 465 ASP D 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 95 OG REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 ILE D 100D O REMARK 470 ARG D 100H O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 6 CA GLY A 24 1.57 REMARK 500 NH1 ARG D 94 O HOH D 301 1.93 REMARK 500 OG SER C 27 OD1 ASP C 92 1.95 REMARK 500 O HOH B 439 O HOH B 442 1.96 REMARK 500 OH TYR C 87 O HOH C 401 2.04 REMARK 500 NE2 GLN B 1 O GLY C 57 2.06 REMARK 500 OE1 GLU A 125 O HOH A 401 2.10 REMARK 500 O THR A 6 N GLY A 24 2.10 REMARK 500 N SER B 125 OG SER B 128 2.12 REMARK 500 O GLU C 184 OG SER C 188 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 71 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 ALA A 71 O - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 PRO C 142 C - N - CD ANGL. DEV. = 17.1 DEGREES REMARK 500 LEU D 136 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 PRO D 145 C - N - CA ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO D 145 C - N - CD ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO D 147 C - N - CD ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 26 10.65 84.08 REMARK 500 ASN A 51 -56.30 74.42 REMARK 500 PRO A 66 172.05 -58.56 REMARK 500 ASP A 152 -121.86 49.36 REMARK 500 SER B 15 -10.88 78.27 REMARK 500 SER C 27 135.03 90.39 REMARK 500 ASN C 51 -55.41 74.74 REMARK 500 ASP C 152 -125.04 58.06 REMARK 500 SER D 15 -12.76 78.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE D 144 PRO D 145 -33.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 C 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE C 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CEY RELATED DB: PDB REMARK 900 RELATED ID: 5CEZ RELATED DB: PDB DBREF 5CEX A 2 213 PDB 5CEX 5CEX 2 213 DBREF 5CEX B 1 215 PDB 5CEX 5CEX 1 215 DBREF 5CEX C 2 213 PDB 5CEX 5CEX 2 213 DBREF 5CEX D 1 215 PDB 5CEX 5CEX 1 215 SEQRES 1 A 218 SER TYR VAL LEU THR GLN PRO SER GLN LEU SER VAL ALA SEQRES 2 A 218 PRO GLY GLU THR ALA ARG ILE SER CYS GLY GLY ARG SER SEQRES 3 A 218 LEU GLY SER ARG ALA VAL GLN TRP TYR GLN GLN LYS PRO SEQRES 4 A 218 GLY GLN ALA PRO VAL LEU VAL ILE TYR ASN ASN GLN ASP SEQRES 5 A 218 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER PRO SEQRES 6 A 218 ASP SER ASN PHE GLY THR THR ALA THR LEU THR ILE SER SEQRES 7 A 218 ARG VAL GLU ALA GLY ASP GLU ALA ASP TYR TYR CYS HIS SEQRES 8 A 218 MET TRP ASP SER ARG SER ALA ILE ASN TRP VAL PHE GLY SEQRES 9 A 218 GLY GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA SEQRES 10 A 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 A 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 A 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 A 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 A 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 A 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SEQRES 16 A 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 A 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 B 236 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 B 236 PRO SER GLU THR LEU SER LEU THR CYS SER VAL SER GLY SEQRES 3 B 236 ALA SER ILE SER ASP HIS TYR TRP SER TRP ILE ARG GLN SEQRES 4 B 236 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR VAL TYR SEQRES 5 B 236 ASP SER GLY ASP THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 B 236 ARG VAL ASN LEU SER LEU ASP THR SER LYS ASN GLN VAL SEQRES 7 B 236 SER LEU SER LEU THR ALA VAL THR ALA ALA ASP SER ALA SEQRES 8 B 236 ILE TYR TYR CYS ALA ARG THR GLN HIS GLY ARG ARG ILE SEQRES 9 B 236 TYR GLY ILE VAL ALA PHE ARG GLU TRP PHE THR TYR PHE SEQRES 10 B 236 TYR MET ASP VAL TRP GLY GLN GLY THR PRO VAL THR VAL SEQRES 11 B 236 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 B 236 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 B 236 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 B 236 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 B 236 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 B 236 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 B 236 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 B 236 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 B 236 CYS ASP SEQRES 1 C 218 SER TYR VAL LEU THR GLN PRO SER GLN LEU SER VAL ALA SEQRES 2 C 218 PRO GLY GLU THR ALA ARG ILE SER CYS GLY GLY ARG SER SEQRES 3 C 218 LEU GLY SER ARG ALA VAL GLN TRP TYR GLN GLN LYS PRO SEQRES 4 C 218 GLY GLN ALA PRO VAL LEU VAL ILE TYR ASN ASN GLN ASP SEQRES 5 C 218 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER PRO SEQRES 6 C 218 ASP SER ASN PHE GLY THR THR ALA THR LEU THR ILE SER SEQRES 7 C 218 ARG VAL GLU ALA GLY ASP GLU ALA ASP TYR TYR CYS HIS SEQRES 8 C 218 MET TRP ASP SER ARG SER ALA ILE ASN TRP VAL PHE GLY SEQRES 9 C 218 GLY GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA SEQRES 10 C 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 C 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 C 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 C 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 C 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 C 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SEQRES 16 C 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 C 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 D 236 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 D 236 PRO SER GLU THR LEU SER LEU THR CYS SER VAL SER GLY SEQRES 3 D 236 ALA SER ILE SER ASP HIS TYR TRP SER TRP ILE ARG GLN SEQRES 4 D 236 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR VAL TYR SEQRES 5 D 236 ASP SER GLY ASP THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 D 236 ARG VAL ASN LEU SER LEU ASP THR SER LYS ASN GLN VAL SEQRES 7 D 236 SER LEU SER LEU THR ALA VAL THR ALA ALA ASP SER ALA SEQRES 8 D 236 ILE TYR TYR CYS ALA ARG THR GLN HIS GLY ARG ARG ILE SEQRES 9 D 236 TYR GLY ILE VAL ALA PHE ARG GLU TRP PHE THR TYR PHE SEQRES 10 D 236 TYR MET ASP VAL TRP GLY GLN GLY THR PRO VAL THR VAL SEQRES 11 D 236 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 D 236 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 D 236 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 D 236 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 D 236 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 D 236 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 D 236 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 D 236 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 D 236 CYS ASP HET PG4 A 301 13 HET GOL B 301 6 HET P6G B 302 19 HET GOL C 301 6 HET GOL C 302 6 HET GOL C 303 6 HET P6G C 304 19 HET PG4 C 305 13 HET PG4 C 306 13 HET PGE C 307 10 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 5 PG4 3(C8 H18 O5) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 7 P6G 2(C12 H26 O7) FORMUL 14 PGE C6 H14 O4 FORMUL 15 HOH *216(H2 O) HELIX 1 AA1 GLU A 79 GLU A 83 5 5 HELIX 2 AA2 SER A 122 ALA A 128 1 7 HELIX 3 AA3 THR A 182 HIS A 189 1 8 HELIX 4 AA4 SER B 28 HIS B 32 5 5 HELIX 5 AA5 PRO B 61 LYS B 64 5 4 HELIX 6 AA6 THR B 83 SER B 87 5 5 HELIX 7 AA7 ILE B 100D ARG B 100H 5 5 HELIX 8 AA8 SER B 154 ALA B 156 5 3 HELIX 9 AA9 SER B 185 GLN B 190 1 6 HELIX 10 AB1 LYS B 199 ASN B 202 5 4 HELIX 11 AB2 GLU C 79 GLU C 83 5 5 HELIX 12 AB3 SER C 122 ALA C 128 1 7 HELIX 13 AB4 THR C 182 HIS C 189 1 8 HELIX 14 AB5 SER D 28 HIS D 32 5 5 HELIX 15 AB6 LEU D 63 SER D 65 5 3 HELIX 16 AB7 THR D 83 SER D 87 5 5 HELIX 17 AB8 SER D 154 ALA D 156 5 3 HELIX 18 AB9 SER D 185 THR D 189 5 5 HELIX 19 AC1 LYS D 199 ASN D 202 5 4 SHEET 1 AA1 5 GLN A 10 VAL A 13 0 SHEET 2 AA1 5 THR A 102 VAL A 106 1 O LYS A 103 N LEU A 11 SHEET 3 AA1 5 ASP A 85 ASP A 92 -1 N TYR A 86 O THR A 102 SHEET 4 AA1 5 ARG A 31 GLN A 38 -1 N ALA A 32 O TRP A 91 SHEET 5 AA1 5 VAL A 45 ILE A 48 -1 O VAL A 45 N GLN A 37 SHEET 1 AA2 3 ALA A 19 SER A 22 0 SHEET 2 AA2 3 THR A 72 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 3 AA2 3 PHE A 62 GLY A 64 -1 N SER A 63 O THR A 74 SHEET 1 AA3 4 SER A 115 PHE A 119 0 SHEET 2 AA3 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 AA3 4 TYR A 173 LEU A 181 -1 O LEU A 181 N ALA A 131 SHEET 4 AA3 4 VAL A 160 THR A 162 -1 N GLU A 161 O TYR A 178 SHEET 1 AA4 4 SER A 115 PHE A 119 0 SHEET 2 AA4 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 AA4 4 TYR A 173 LEU A 181 -1 O LEU A 181 N ALA A 131 SHEET 4 AA4 4 SER A 166 LYS A 167 -1 N SER A 166 O ALA A 174 SHEET 1 AA5 4 SER A 154 PRO A 155 0 SHEET 2 AA5 4 THR A 146 ALA A 151 -1 N ALA A 151 O SER A 154 SHEET 3 AA5 4 TYR A 192 HIS A 198 -1 O GLN A 195 N ALA A 148 SHEET 4 AA5 4 SER A 201 VAL A 207 -1 O SER A 201 N HIS A 198 SHEET 1 AA6 4 GLN B 3 SER B 7 0 SHEET 2 AA6 4 LEU B 18 SER B 25 -1 O THR B 21 N SER B 7 SHEET 3 AA6 4 GLN B 77 LEU B 82 -1 O LEU B 80 N LEU B 20 SHEET 4 AA6 4 VAL B 67 ASP B 72 -1 N ASP B 72 O GLN B 77 SHEET 1 AA7 6 LEU B 11 VAL B 12 0 SHEET 2 AA7 6 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 AA7 6 ALA B 88 ILE B 100A-1 N TYR B 90 O THR B 105 SHEET 4 AA7 6 TYR B 33 GLN B 39 -1 N ILE B 37 O TYR B 91 SHEET 5 AA7 6 LEU B 45 VAL B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA7 6 THR B 57 TYR B 59 -1 O ASN B 58 N TYR B 50 SHEET 1 AA8 4 LEU B 11 VAL B 12 0 SHEET 2 AA8 4 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 AA8 4 ALA B 88 ILE B 100A-1 N TYR B 90 O THR B 105 SHEET 4 AA8 4 TRP B 100J TRP B 101 -1 O TYR B 100O N GLN B 96 SHEET 1 AA9 4 SER B 118 LEU B 122 0 SHEET 2 AA9 4 THR B 133 TYR B 143 -1 O GLY B 137 N LEU B 122 SHEET 3 AA9 4 TYR B 174 PRO B 183 -1 O VAL B 182 N ALA B 134 SHEET 4 AA9 4 VAL B 161 THR B 163 -1 N HIS B 162 O VAL B 179 SHEET 1 AB1 4 THR B 129 SER B 130 0 SHEET 2 AB1 4 THR B 133 TYR B 143 -1 O THR B 133 N SER B 130 SHEET 3 AB1 4 TYR B 174 PRO B 183 -1 O VAL B 182 N ALA B 134 SHEET 4 AB1 4 VAL B 167 LEU B 168 -1 N VAL B 167 O SER B 175 SHEET 1 AB2 3 THR B 149 TRP B 152 0 SHEET 2 AB2 3 TYR B 192 HIS B 198 -1 O ASN B 195 N SER B 151 SHEET 3 AB2 3 THR B 203 VAL B 209 -1 O VAL B 205 N VAL B 196 SHEET 1 AB3 5 GLN C 10 VAL C 13 0 SHEET 2 AB3 5 THR C 102 VAL C 106 1 O THR C 105 N LEU C 11 SHEET 3 AB3 5 ALA C 84 ASP C 92 -1 N ALA C 84 O LEU C 104 SHEET 4 AB3 5 ARG C 31 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 AB3 5 VAL C 45 ILE C 48 -1 O VAL C 45 N GLN C 37 SHEET 1 AB4 3 ALA C 19 SER C 22 0 SHEET 2 AB4 3 THR C 72 ILE C 75 -1 O LEU C 73 N ILE C 21 SHEET 3 AB4 3 PHE C 62 GLY C 64 -1 N SER C 63 O THR C 74 SHEET 1 AB5 4 SER C 115 PHE C 119 0 SHEET 2 AB5 4 ALA C 131 PHE C 140 -1 O LEU C 136 N THR C 117 SHEET 3 AB5 4 TYR C 173 LEU C 181 -1 O LEU C 181 N ALA C 131 SHEET 4 AB5 4 VAL C 160 THR C 162 -1 N GLU C 161 O TYR C 178 SHEET 1 AB6 4 SER C 115 PHE C 119 0 SHEET 2 AB6 4 ALA C 131 PHE C 140 -1 O LEU C 136 N THR C 117 SHEET 3 AB6 4 TYR C 173 LEU C 181 -1 O LEU C 181 N ALA C 131 SHEET 4 AB6 4 SER C 166 LYS C 167 -1 N SER C 166 O ALA C 174 SHEET 1 AB7 4 SER C 154 VAL C 156 0 SHEET 2 AB7 4 THR C 146 ALA C 151 -1 N ALA C 151 O SER C 154 SHEET 3 AB7 4 TYR C 192 HIS C 198 -1 O THR C 197 N THR C 146 SHEET 4 AB7 4 SER C 201 VAL C 207 -1 O SER C 201 N HIS C 198 SHEET 1 AB8 4 GLN D 3 SER D 7 0 SHEET 2 AB8 4 LEU D 18 SER D 25 -1 O THR D 21 N SER D 7 SHEET 3 AB8 4 GLN D 77 LEU D 82 -1 O VAL D 78 N CYS D 22 SHEET 4 AB8 4 VAL D 67 ASP D 72 -1 N ASP D 72 O GLN D 77 SHEET 1 AB9 6 LEU D 11 VAL D 12 0 SHEET 2 AB9 6 THR D 105 VAL D 109 1 O THR D 108 N VAL D 12 SHEET 3 AB9 6 ALA D 88 ILE D 100A-1 N TYR D 90 O THR D 105 SHEET 4 AB9 6 TYR D 33 SER D 40 -1 N ILE D 37 O TYR D 91 SHEET 5 AB9 6 GLY D 44 VAL D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AB9 6 THR D 57 TYR D 59 -1 O ASN D 58 N TYR D 50 SHEET 1 AC1 4 LEU D 11 VAL D 12 0 SHEET 2 AC1 4 THR D 105 VAL D 109 1 O THR D 108 N VAL D 12 SHEET 3 AC1 4 ALA D 88 ILE D 100A-1 N TYR D 90 O THR D 105 SHEET 4 AC1 4 TRP D 100J TRP D 101 -1 O TYR D 100M N GLY D 98 SHEET 1 AC2 4 SER D 118 LEU D 122 0 SHEET 2 AC2 4 THR D 133 TYR D 143 -1 O LEU D 139 N PHE D 120 SHEET 3 AC2 4 TYR D 174 PRO D 183 -1 O VAL D 180 N LEU D 136 SHEET 4 AC2 4 VAL D 161 THR D 163 -1 N HIS D 162 O VAL D 179 SHEET 1 AC3 4 SER D 118 LEU D 122 0 SHEET 2 AC3 4 THR D 133 TYR D 143 -1 O LEU D 139 N PHE D 120 SHEET 3 AC3 4 TYR D 174 PRO D 183 -1 O VAL D 180 N LEU D 136 SHEET 4 AC3 4 VAL D 167 LEU D 168 -1 N VAL D 167 O SER D 175 SHEET 1 AC4 3 THR D 149 TRP D 152 0 SHEET 2 AC4 3 TYR D 192 HIS D 198 -1 O ASN D 195 N SER D 151 SHEET 3 AC4 3 THR D 203 VAL D 209 -1 O VAL D 209 N TYR D 192 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.05 SSBOND 2 CYS A 135 CYS A 194 1555 1555 2.06 SSBOND 3 CYS B 138 CYS B 194 1555 1555 2.04 SSBOND 4 CYS C 23 CYS C 88 1555 1555 2.05 SSBOND 5 CYS C 135 CYS C 194 1555 1555 2.04 SSBOND 6 CYS D 22 CYS D 92 1555 1555 2.13 SSBOND 7 CYS D 138 CYS D 194 1555 1555 2.04 CISPEP 1 TYR A 141 PRO A 142 0 1.46 CISPEP 2 PHE B 144 PRO B 145 0 -7.96 CISPEP 3 GLU B 146 PRO B 147 0 5.09 CISPEP 4 TYR C 141 PRO C 142 0 0.83 CISPEP 5 GLU D 146 PRO D 147 0 5.23 SITE 1 AC1 10 TYR A 49 GLN A 52 ASP A 53 ARG A 54 SITE 2 AC1 10 ASN C 50 HIS D 97 GLY D 98 ARG D 99 SITE 3 AC1 10 TYR D 100M HOH D 314 SITE 1 AC2 5 GLU B 146 PRO B 147 VAL B 148 PRO B 165 SITE 2 AC2 5 ALA B 166 SITE 1 AC3 7 PRO B 41 ILE B 89 TYR B 91 PRO B 106 SITE 2 AC3 7 THR B 108 GLU B 146 TYR B 174 SITE 1 AC4 5 GLN C 38 PRO C 40 ALA C 84 ASP C 85 SITE 2 AC4 5 LYS C 103 SITE 1 AC5 3 PRO C 59 ARG C 61 GLU C 79 SITE 1 AC6 4 HIS B 32 GLN B 96 ASP C 53 ARG C 54 SITE 1 AC7 8 GLN C 37 LYS C 39 PRO C 40 GLN C 42 SITE 2 AC7 8 PHE C 62 GLY C 81 ASP C 82 GLN C 168 SITE 1 AC8 9 SER A 56 VAL C 45 LEU C 46 PRO C 55 SITE 2 AC8 9 SER C 56 ILE C 58 PG4 C 306 HOH C 439 SITE 3 AC8 9 ASP D 100Q SITE 1 AC9 7 SER A 56 ILE A 58 VAL B 2 ARG C 54 SITE 2 AC9 7 SER C 56 GLY C 57 PG4 C 305 SITE 1 AD1 3 GLN C 195 THR C 202 GLU C 204 CRYST1 70.952 108.726 72.703 90.00 91.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014094 0.000000 0.000332 0.00000 SCALE2 0.000000 0.009197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013758 0.00000