HEADER IMMUNE SYSTEM 07-JUL-15 5CEY TITLE CRYSTAL STRUCTURE OF FAB 9H+3L, A PUTATIVE PRECURSOR OF THE PGT121 TITLE 2 FAMILY OF POTENT HIV-1 ANTIBODIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY 9H+3L FAB LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 9H+3L FAB HEAVY CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV-1, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.A.WILSON,F.GARCES REVDAT 3 27-SEP-23 5CEY 1 JRNL REMARK REVDAT 2 06-JAN-16 5CEY 1 JRNL REVDAT 1 23-DEC-15 5CEY 0 JRNL AUTH F.GARCES,J.H.LEE,N.DE VAL,A.TORRENTS DE LA PENA,L.KONG, JRNL AUTH 2 C.PUCHADES,Y.HUA,R.L.STANFIELD,D.R.BURTON,J.P.MOORE, JRNL AUTH 3 R.W.SANDERS,A.B.WARD,I.A.WILSON JRNL TITL AFFINITY MATURATION OF A POTENT FAMILY OF HIV ANTIBODIES IS JRNL TITL 2 PRIMARILY FOCUSED ON ACCOMMODATING OR AVOIDING GLYCANS. JRNL REF IMMUNITY V. 43 1053 2015 JRNL REFN ISSN 1074-7613 JRNL PMID 26682982 JRNL DOI 10.1016/J.IMMUNI.2015.11.007 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 33008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7557 - 5.4618 0.98 2986 163 0.2087 0.2337 REMARK 3 2 5.4618 - 4.3362 0.99 2868 132 0.1727 0.2182 REMARK 3 3 4.3362 - 3.7884 1.00 2817 149 0.1951 0.2478 REMARK 3 4 3.7884 - 3.4422 1.00 2787 140 0.2183 0.2569 REMARK 3 5 3.4422 - 3.1955 1.00 2817 135 0.2340 0.2672 REMARK 3 6 3.1955 - 3.0072 1.00 2799 135 0.2604 0.3175 REMARK 3 7 3.0072 - 2.8566 1.00 2706 162 0.2581 0.3059 REMARK 3 8 2.8566 - 2.7322 0.99 2764 142 0.2792 0.3975 REMARK 3 9 2.7322 - 2.6271 0.93 2570 151 0.2845 0.3340 REMARK 3 10 2.6271 - 2.5364 0.87 2398 121 0.3026 0.3293 REMARK 3 11 2.5364 - 2.4571 0.76 2097 109 0.2877 0.3553 REMARK 3 12 2.4571 - 2.3869 0.66 1754 106 0.2929 0.3847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6887 REMARK 3 ANGLE : 0.747 9369 REMARK 3 CHIRALITY : 0.033 1053 REMARK 3 PLANARITY : 0.005 1183 REMARK 3 DIHEDRAL : 11.266 2446 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.387 REMARK 200 RESOLUTION RANGE LOW (A) : 45.747 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 7.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 72.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26000 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R26 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (V/V) PEG 600, 0.1M NACL AND 0.1 M REMARK 280 NA CITRATE PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.14K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.36800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.05750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 169.07300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.05750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.36800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 169.07300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 GLU A 211 REMARK 465 CYS A 212 REMARK 465 SER A 213 REMARK 465 LYS B 212 REMARK 465 SER B 213 REMARK 465 CYS B 214 REMARK 465 ASP B 215 REMARK 465 GLY C 2 REMARK 465 SER C 3 REMARK 465 VAL C 4 REMARK 465 THR C 5 REMARK 465 SER C 6 REMARK 465 PHE C 67C REMARK 465 GLY C 67D REMARK 465 THR C 67E REMARK 465 GLU C 211 REMARK 465 CYS C 212 REMARK 465 SER C 213 REMARK 465 GLN D 1 REMARK 465 SER D 126 REMARK 465 LYS D 127 REMARK 465 SER D 128 REMARK 465 THR D 129 REMARK 465 SER D 130 REMARK 465 GLY D 131 REMARK 465 LYS D 212 REMARK 465 SER D 213 REMARK 465 CYS D 214 REMARK 465 ASP D 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 67B O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 23 SG CYS A 88 1.46 REMARK 500 SG CYS D 138 SG CYS D 194 1.65 REMARK 500 O VAL D 209 O HOH D 401 1.87 REMARK 500 OG SER B 130 O HOH B 401 1.88 REMARK 500 OE1 GLU A 125 O HOH A 401 1.92 REMARK 500 O HOH B 424 O HOH B 425 2.03 REMARK 500 OG1 THR B 129 O HOH B 402 2.03 REMARK 500 NZ LYS D 13 O SER D 111 2.05 REMARK 500 OG SER D 40 O THR D 87 2.05 REMARK 500 CG GLU B 55 NH2 ARG B 71 2.05 REMARK 500 ND1 HIS A 89 O HOH A 402 2.10 REMARK 500 O VAL D 100D N GLY D 100H 2.11 REMARK 500 OG SER B 201 N THR B 203 2.13 REMARK 500 OE2 GLU C 125 OG1 THR C 132 2.13 REMARK 500 OG SER B 52 OG1 THR B 56 2.15 REMARK 500 O HOH A 421 O HOH A 429 2.17 REMARK 500 ND2 ASN C 50 OD2 ASP C 53 2.18 REMARK 500 CB CYS A 23 SG CYS A 88 2.18 REMARK 500 OH TYR B 100O O HOH B 403 2.19 REMARK 500 OD1 ASN D 60 OG SER D 62 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 110 CD PRO C 110 N 0.087 REMARK 500 PRO D 117 CD PRO D 117 N -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA C 84 CB - CA - C ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO C 142 C - N - CD ANGL. DEV. = 17.2 DEGREES REMARK 500 CYS D 138 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 PRO D 147 C - N - CD ANGL. DEV. = 18.7 DEGREES REMARK 500 PRO D 147 CA - N - CD ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 40 118.79 -37.44 REMARK 500 ASN A 51 -58.62 74.18 REMARK 500 ASN A 67B -143.55 59.92 REMARK 500 ALA A 84 173.03 165.27 REMARK 500 ASP A 152 -126.31 58.52 REMARK 500 ASN A 171 14.79 81.65 REMARK 500 SER B 15 -2.13 85.25 REMARK 500 SER B 65 -1.56 82.84 REMARK 500 PHE B 100G 3.16 82.38 REMARK 500 SER B 126 -177.62 85.43 REMARK 500 ASN C 51 -57.44 74.72 REMARK 500 ALA C 84 173.46 160.38 REMARK 500 ASP C 152 -126.24 57.94 REMARK 500 SER D 15 1.92 81.56 REMARK 500 PHE D 100J -153.15 43.36 REMARK 500 SER D 154 -128.50 58.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE7 D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CEX RELATED DB: PDB REMARK 900 ANTIBODY OF THE SAME FAMILY REMARK 900 RELATED ID: 5CEZ RELATED DB: PDB DBREF 5CEY A 2 213 PDB 5CEY 5CEY 2 213 DBREF 5CEY B 1 215 PDB 5CEY 5CEY 1 215 DBREF 5CEY C 2 213 PDB 5CEY 5CEY 2 213 DBREF 5CEY D 1 215 PDB 5CEY 5CEY 1 215 SEQRES 1 A 218 GLY SER VAL THR SER TYR VAL ARG PRO LEU SER VAL ALA SEQRES 2 A 218 LEU GLY GLU THR ALA SER ILE SER CYS GLY ARG GLN ALA SEQRES 3 A 218 LEU GLY SER ARG ALA VAL GLN TRP TYR GLN HIS ARG PRO SEQRES 4 A 218 GLY GLN ALA PRO ILE LEU LEU ILE TYR ASN ASN GLN ASP SEQRES 5 A 218 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY THR PRO SEQRES 6 A 218 ASP ILE ASN PHE GLY THR ARG ALA THR LEU THR ILE SER SEQRES 7 A 218 GLY VAL GLU ALA GLY ASP GLU ALA ASP TYR TYR CYS HIS SEQRES 8 A 218 MET TRP ASP SER ARG SER GLY PHE SER TRP SER PHE GLY SEQRES 9 A 218 GLY ALA THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA SEQRES 10 A 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 A 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 A 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 A 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 A 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 A 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SEQRES 16 A 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 A 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 B 236 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 B 236 PRO SER GLU THR LEU SER VAL THR CYS ILE VAL SER GLY SEQRES 3 B 236 GLY SER ILE SER ASN TYR TYR TRP THR TRP ILE ARG GLN SEQRES 4 B 236 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SER SEQRES 5 B 236 ASP ARG GLU THR THR THR TYR ASN PRO SER LEU LYS SER SEQRES 6 B 236 ARG VAL VAL ILE SER ARG ASP THR SER LYS ASN GLN LEU SEQRES 7 B 236 SER LEU LYS LEU ASN SER VAL THR ALA ALA ASP THR ALA SEQRES 8 B 236 ILE TYR TYR CYS ALA THR ALA ARG ARG GLY GLN ARG ILE SEQRES 9 B 236 TYR GLY VAL VAL SER PHE GLY GLU PHE PHE TYR TYR TYR SEQRES 10 B 236 TYR MET ASP VAL TRP GLY LYS GLY THR ALA VAL THR VAL SEQRES 11 B 236 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 B 236 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 B 236 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 B 236 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 B 236 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 B 236 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 B 236 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 B 236 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 B 236 CYS ASP SEQRES 1 C 218 GLY SER VAL THR SER TYR VAL ARG PRO LEU SER VAL ALA SEQRES 2 C 218 LEU GLY GLU THR ALA SER ILE SER CYS GLY ARG GLN ALA SEQRES 3 C 218 LEU GLY SER ARG ALA VAL GLN TRP TYR GLN HIS ARG PRO SEQRES 4 C 218 GLY GLN ALA PRO ILE LEU LEU ILE TYR ASN ASN GLN ASP SEQRES 5 C 218 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY THR PRO SEQRES 6 C 218 ASP ILE ASN PHE GLY THR ARG ALA THR LEU THR ILE SER SEQRES 7 C 218 GLY VAL GLU ALA GLY ASP GLU ALA ASP TYR TYR CYS HIS SEQRES 8 C 218 MET TRP ASP SER ARG SER GLY PHE SER TRP SER PHE GLY SEQRES 9 C 218 GLY ALA THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA SEQRES 10 C 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 C 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 C 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 C 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 C 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 C 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SEQRES 16 C 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 C 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 D 236 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 D 236 PRO SER GLU THR LEU SER VAL THR CYS ILE VAL SER GLY SEQRES 3 D 236 GLY SER ILE SER ASN TYR TYR TRP THR TRP ILE ARG GLN SEQRES 4 D 236 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SER SEQRES 5 D 236 ASP ARG GLU THR THR THR TYR ASN PRO SER LEU LYS SER SEQRES 6 D 236 ARG VAL VAL ILE SER ARG ASP THR SER LYS ASN GLN LEU SEQRES 7 D 236 SER LEU LYS LEU ASN SER VAL THR ALA ALA ASP THR ALA SEQRES 8 D 236 ILE TYR TYR CYS ALA THR ALA ARG ARG GLY GLN ARG ILE SEQRES 9 D 236 TYR GLY VAL VAL SER PHE GLY GLU PHE PHE TYR TYR TYR SEQRES 10 D 236 TYR MET ASP VAL TRP GLY LYS GLY THR ALA VAL THR VAL SEQRES 11 D 236 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 D 236 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 D 236 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 D 236 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 D 236 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 D 236 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 D 236 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 D 236 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 D 236 CYS ASP HET GOL A 301 6 HET P6G B 301 19 HET GOL C 301 6 HET PE7 D 301 22 HETNAM GOL GLYCEROL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PE7 1-DEOXY-1-THIO-HEPTAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 P6G C12 H26 O7 FORMUL 8 PE7 C14 H30 O7 S FORMUL 9 HOH *102(H2 O) HELIX 1 AA1 GLU A 79 GLU A 83 5 5 HELIX 2 AA2 SER A 122 ALA A 128 1 7 HELIX 3 AA3 THR A 182 SER A 188 1 7 HELIX 4 AA4 THR B 83 THR B 87 5 5 HELIX 5 AA5 VAL B 100E GLU B 100I 5 5 HELIX 6 AA6 SER B 154 ALA B 156 5 3 HELIX 7 AA7 GLU C 79 GLU C 83 5 5 HELIX 8 AA8 SER C 122 ALA C 128 1 7 HELIX 9 AA9 THR C 182 LYS C 187 1 6 HELIX 10 AB1 SER D 28 TYR D 32 5 5 HELIX 11 AB2 LEU D 63 SER D 65 5 3 HELIX 12 AB3 THR D 83 THR D 87 5 5 HELIX 13 AB4 SER D 185 GLN D 190 1 6 SHEET 1 AA1 5 VAL A 8 ALA A 14 0 SHEET 2 AA1 5 ALA A 101 LEU A 107 1 O ALA A 101 N ARG A 9 SHEET 3 AA1 5 ALA A 84 ASP A 92 -1 N ALA A 84 O LEU A 104 SHEET 4 AA1 5 ARG A 31 HIS A 38 -1 N GLN A 34 O HIS A 89 SHEET 5 AA1 5 ILE A 45 ILE A 48 -1 O ILE A 48 N TRP A 35 SHEET 1 AA2 3 ALA A 19 SER A 22 0 SHEET 2 AA2 3 THR A 72 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 3 AA2 3 PHE A 62 GLY A 64 -1 N SER A 63 O THR A 74 SHEET 1 AA3 4 SER A 115 PHE A 119 0 SHEET 2 AA3 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 AA3 4 TYR A 173 LEU A 181 -1 O LEU A 181 N ALA A 131 SHEET 4 AA3 4 VAL A 160 THR A 162 -1 N GLU A 161 O TYR A 178 SHEET 1 AA4 4 SER A 115 PHE A 119 0 SHEET 2 AA4 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 AA4 4 TYR A 173 LEU A 181 -1 O LEU A 181 N ALA A 131 SHEET 4 AA4 4 SER A 166 LYS A 167 -1 N SER A 166 O ALA A 174 SHEET 1 AA5 4 SER A 154 VAL A 156 0 SHEET 2 AA5 4 THR A 146 ALA A 151 -1 N ALA A 151 O SER A 154 SHEET 3 AA5 4 TYR A 192 HIS A 198 -1 O GLN A 195 N ALA A 148 SHEET 4 AA5 4 SER A 201 VAL A 207 -1 O SER A 201 N HIS A 198 SHEET 1 AA6 4 GLN B 3 SER B 7 0 SHEET 2 AA6 4 LEU B 18 SER B 25 -1 O ILE B 23 N GLN B 5 SHEET 3 AA6 4 GLN B 77 LEU B 82 -1 O LEU B 82 N LEU B 18 SHEET 4 AA6 4 VAL B 67 ASP B 72 -1 N SER B 70 O SER B 79 SHEET 1 AA7 6 LEU B 11 VAL B 12 0 SHEET 2 AA7 6 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 AA7 6 ALA B 88 ARG B 100 -1 N TYR B 90 O THR B 105 SHEET 4 AA7 6 TYR B 33 GLN B 39 -1 N ILE B 37 O TYR B 91 SHEET 5 AA7 6 GLU B 46 ILE B 51 -1 O ILE B 51 N TRP B 34 SHEET 6 AA7 6 THR B 57 TYR B 59 -1 O THR B 58 N TYR B 50 SHEET 1 AA8 4 LEU B 11 VAL B 12 0 SHEET 2 AA8 4 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 AA8 4 ALA B 88 ARG B 100 -1 N TYR B 90 O THR B 105 SHEET 4 AA8 4 PHE B 100K TRP B 101 -1 O TYR B 100M N GLY B 98 SHEET 1 AA9 4 SER B 118 LEU B 122 0 SHEET 2 AA9 4 ALA B 134 TYR B 143 -1 O LEU B 139 N PHE B 120 SHEET 3 AA9 4 TYR B 174 VAL B 182 -1 O VAL B 180 N LEU B 136 SHEET 4 AA9 4 HIS B 162 THR B 163 -1 N HIS B 162 O VAL B 179 SHEET 1 AB1 4 SER B 118 LEU B 122 0 SHEET 2 AB1 4 ALA B 134 TYR B 143 -1 O LEU B 139 N PHE B 120 SHEET 3 AB1 4 TYR B 174 VAL B 182 -1 O VAL B 180 N LEU B 136 SHEET 4 AB1 4 VAL B 167 LEU B 168 -1 N VAL B 167 O SER B 175 SHEET 1 AB2 3 THR B 149 TRP B 152 0 SHEET 2 AB2 3 ILE B 193 HIS B 198 -1 O ASN B 195 N SER B 151 SHEET 3 AB2 3 THR B 203 LYS B 208 -1 O THR B 203 N HIS B 198 SHEET 1 AB3 5 VAL C 8 ALA C 14 0 SHEET 2 AB3 5 ALA C 101 LEU C 107 1 O ALA C 101 N ARG C 9 SHEET 3 AB3 5 ALA C 84 ASP C 92 -1 N TYR C 86 O THR C 102 SHEET 4 AB3 5 ARG C 31 HIS C 38 -1 N HIS C 38 O ASP C 85 SHEET 5 AB3 5 ILE C 45 ILE C 48 -1 O ILE C 45 N GLN C 37 SHEET 1 AB4 3 ALA C 19 SER C 22 0 SHEET 2 AB4 3 THR C 72 ILE C 75 -1 O ILE C 75 N ALA C 19 SHEET 3 AB4 3 PHE C 62 GLY C 64 -1 N SER C 63 O THR C 74 SHEET 1 AB5 4 SER C 115 PHE C 119 0 SHEET 2 AB5 4 ALA C 131 PHE C 140 -1 O LEU C 136 N THR C 117 SHEET 3 AB5 4 TYR C 173 LEU C 181 -1 O LEU C 179 N LEU C 133 SHEET 4 AB5 4 VAL C 160 THR C 162 -1 N GLU C 161 O TYR C 178 SHEET 1 AB6 4 SER C 115 PHE C 119 0 SHEET 2 AB6 4 ALA C 131 PHE C 140 -1 O LEU C 136 N THR C 117 SHEET 3 AB6 4 TYR C 173 LEU C 181 -1 O LEU C 179 N LEU C 133 SHEET 4 AB6 4 SER C 166 LYS C 167 -1 N SER C 166 O ALA C 174 SHEET 1 AB7 4 SER C 154 PRO C 155 0 SHEET 2 AB7 4 THR C 146 ALA C 151 -1 N ALA C 151 O SER C 154 SHEET 3 AB7 4 TYR C 192 HIS C 198 -1 O GLN C 195 N ALA C 148 SHEET 4 AB7 4 SER C 201 VAL C 207 -1 O VAL C 203 N VAL C 196 SHEET 1 AB8 4 GLN D 3 SER D 7 0 SHEET 2 AB8 4 LEU D 18 SER D 25 -1 O ILE D 23 N GLN D 5 SHEET 3 AB8 4 GLN D 77 LEU D 82 -1 O LEU D 82 N LEU D 18 SHEET 4 AB8 4 VAL D 67 ASP D 72 -1 N ASP D 72 O GLN D 77 SHEET 1 AB9 6 LEU D 11 VAL D 12 0 SHEET 2 AB9 6 THR D 105 VAL D 109 1 O THR D 108 N VAL D 12 SHEET 3 AB9 6 ALA D 88 GLN D 99 -1 N TYR D 90 O THR D 105 SHEET 4 AB9 6 TYR D 33 GLN D 39 -1 N ILE D 37 O TYR D 91 SHEET 5 AB9 6 LEU D 45 ILE D 51 -1 O ILE D 51 N TRP D 34 SHEET 6 AB9 6 THR D 57 TYR D 59 -1 O THR D 58 N TYR D 50 SHEET 1 AC1 4 LEU D 11 VAL D 12 0 SHEET 2 AC1 4 THR D 105 VAL D 109 1 O THR D 108 N VAL D 12 SHEET 3 AC1 4 ALA D 88 GLN D 99 -1 N TYR D 90 O THR D 105 SHEET 4 AC1 4 TYR D 100L TRP D 101 -1 O TYR D 100M N GLY D 98 SHEET 1 AC2 4 SER D 118 LEU D 122 0 SHEET 2 AC2 4 THR D 133 TYR D 143 -1 O LEU D 139 N PHE D 120 SHEET 3 AC2 4 TYR D 174 PRO D 183 -1 O VAL D 180 N LEU D 136 SHEET 4 AC2 4 VAL D 161 THR D 163 -1 N HIS D 162 O VAL D 179 SHEET 1 AC3 4 SER D 118 LEU D 122 0 SHEET 2 AC3 4 THR D 133 TYR D 143 -1 O LEU D 139 N PHE D 120 SHEET 3 AC3 4 TYR D 174 PRO D 183 -1 O VAL D 180 N LEU D 136 SHEET 4 AC3 4 VAL D 167 LEU D 168 -1 N VAL D 167 O SER D 175 SHEET 1 AC4 3 THR D 149 TRP D 152 0 SHEET 2 AC4 3 TYR D 192 HIS D 198 -1 O ASN D 195 N SER D 151 SHEET 3 AC4 3 THR D 203 VAL D 209 -1 O VAL D 205 N VAL D 196 SSBOND 1 CYS A 135 CYS A 194 1555 1555 1.83 SSBOND 2 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 3 CYS B 138 CYS B 194 1555 1555 1.87 SSBOND 4 CYS C 23 CYS C 88 1555 1555 1.90 SSBOND 5 CYS C 135 CYS C 194 1555 1555 1.94 SSBOND 6 CYS D 22 CYS D 92 1555 1555 2.03 CISPEP 1 TYR A 141 PRO A 142 0 0.96 CISPEP 2 LYS B 127 SER B 128 0 -3.44 CISPEP 3 PHE B 144 PRO B 145 0 -15.17 CISPEP 4 GLU B 146 PRO B 147 0 2.67 CISPEP 5 SER B 201 ASN B 202 0 -9.51 CISPEP 6 TYR C 141 PRO C 142 0 -3.54 CISPEP 7 PHE D 144 PRO D 145 0 -10.29 CISPEP 8 GLU D 146 PRO D 147 0 5.47 CISPEP 9 SER D 159 GLY D 160 0 -8.87 CISPEP 10 SER D 201 ASN D 202 0 -14.60 SITE 1 AC1 6 GLU A 60 TYR A 141 PRO A 142 GLY A 143 SITE 2 AC1 6 ALA A 144 TYR A 173 SITE 1 AC2 4 SER A 191 THR A 206 SER B 70 LYS B 81 SITE 1 AC3 3 GLY C 41 GLY D 104 PRO D 147 SITE 1 AC4 7 SER C 153 THR C 206 ARG D 66 VAL D 68 SITE 2 AC4 7 SER D 70 LYS D 81 ASN D 82A CRYST1 40.736 338.146 62.115 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016099 0.00000